94 homologs were found in PanDaTox collection
for query gene Cthe_2498 on replicon NC_009012
Organism: Clostridium thermocellum ATCC 27405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009012  Cthe_2498  N-acetylmuramoyl-L-alanine amidase  100 
 
 
218 aa  453  1.0000000000000001e-126  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.11512  n/a   
 
 
-
 
NC_013517  Sterm_1450  N-acetylmuramoyl-L-alanine amidase  51.66 
 
 
185 aa  147  8e-35  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.655683  n/a   
 
 
-
 
NC_013517  Sterm_2916  N-acetylmuramoyl-L-alanine amidase  49.01 
 
 
185 aa  146  3e-34  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_3737  N-acetylmuramoyl-L-alanine amidase  40.19 
 
 
575 aa  138  6e-32  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS3463  N-acetylmuramoyl-L-alanine amidase  40.19 
 
 
575 aa  138  6e-32  Bacillus anthracis str. Sterne  Bacteria  normal  0.219832  n/a   
 
 
-
 
NC_003909  BCE_3710  N-acetylmuramoyl-L-alanine amidase  39.25 
 
 
575 aa  134  8e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3449  N-acetylmuramoyl-L-alanine amidase  38.57 
 
 
843 aa  134  8e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_2329  N-acetylmuramoyl-L-alanine amidase  42.94 
 
 
596 aa  134  9e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.234722  n/a   
 
 
-
 
NC_011773  BCAH820_3692  surface-layer N-acetylmuramoyl-L-alanine amidase  39.25 
 
 
575 aa  134  9.999999999999999e-31  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00650388 
 
 
-
 
NC_011658  BCAH187_A3716  surface-layer N-acetylmuramoyl-L-alanine amidase  39.25 
 
 
575 aa  133  1.9999999999999998e-30  Bacillus cereus AH187  Bacteria  normal  0.597701  n/a   
 
 
-
 
NC_011772  BCG9842_B2684  prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase, family 2  46.43 
 
 
311 aa  129  3e-29  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010183  BcerKBAB4_5853  N-acetylmuramoyl-L-alanine amidase  46.58 
 
 
311 aa  129  3e-29  Bacillus weihenstephanensis KBAB4  Bacteria  n/a    n/a   
 
 
-
 
NC_010184  BcerKBAB4_3412  N-acetylmuramoyl-L-alanine amidase  47.2 
 
 
310 aa  127  1.0000000000000001e-28  Bacillus weihenstephanensis KBAB4  Bacteria  unclonable  0.000000169904  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3361  N-acetylmuramoyl-L-alanine amidase  45.33 
 
 
575 aa  127  1.0000000000000001e-28  Bacillus weihenstephanensis KBAB4  Bacteria  unclonable  0.00000479287  n/a   
 
 
-
 
NC_010180  BcerKBAB4_5468  N-acetylmuramoyl-L-alanine amidase  37.67 
 
 
533 aa  126  3e-28  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.000294756  normal  0.0109567 
 
 
-
 
NC_011725  BCB4264_A3210  N-acetylmuramoyl-L-alanine amidase  37.67 
 
 
533 aa  125  4.0000000000000003e-28  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A2637  prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase, family 2  45.24 
 
 
311 aa  125  6e-28  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS3490  prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase family protein 2  47.2 
 
 
310 aa  125  7e-28  Bacillus anthracis str. Sterne  Bacteria  unclonable  0.000000000347114  n/a   
 
 
-
 
NC_007530  GBAA_3767  prophage lambdaba01, n-acetylmuramoyl-l-alanine amidase family protein 2  47.2 
 
 
310 aa  125  7e-28  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  unclonable  0.0000000000174527  n/a   
 
 
-
 
NC_011725  BCB4264_A3617  N-acetylmuramoyl-L-alanine amidase XlyB  41.15 
 
 
328 aa  124  1e-27  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0777  N-acetylmuramoyl-L-alanine amidase  37.02 
 
 
567 aa  123  2e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.173449  n/a   
 
 
-
 
NC_010180  BcerKBAB4_5715  N-acetylmuramoyl-L-alanine amidase  40.62 
 
 
328 aa  122  4e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  normal  0.918586 
 
 
-
 
NC_011773  BCAH820_0963  hypothetical protein  44.44 
 
 
579 aa  120  9.999999999999999e-27  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011772  BCG9842_B4405  N-acetylmuramoyl-L-alanine amidase  36.54 
 
 
567 aa  120  9.999999999999999e-27  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0000032251 
 
 
-
 
NC_011658  BCAH187_A1050  hypothetical protein  44.44 
 
 
578 aa  120  1.9999999999999998e-26  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0925  N-acetylmuramoyl-L-alanine amidase  35.68 
 
 
572 aa  120  1.9999999999999998e-26  Bacillus cereus B4264  Bacteria  normal  0.702364  n/a   
 
 
-
 
NC_003909  BCE_0962  hypothetical protein  44.44 
 
 
579 aa  119  3e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A3303  N-acetylmuramoyl-L-alanine amidase  42.5 
 
 
591 aa  119  4.9999999999999996e-26  Bacillus cereus AH187  Bacteria  normal  0.653459  n/a   
 
 
-
 
NC_007530  GBAA_0872  N-acetylmuramoyl-L-alanine amidase  42.86 
 
 
348 aa  118  4.9999999999999996e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_3295  S-layer protein, putative  42.5 
 
 
591 aa  119  4.9999999999999996e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0829  N-acetylmuramoyl-L-alanine amidase  42.86 
 
 
397 aa  119  4.9999999999999996e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3381  N-acetylmuramoyl-L-alanine amidase  48.44 
 
 
389 aa  117  9e-26  Bacillus cereus E33L  Bacteria  normal  0.515953  n/a   
 
 
-
 
NC_005957  BT9727_3033  N-acetylmuramoyl-L-alanine amidase and S-layer protein fusion  42.14 
 
 
591 aa  117  1.9999999999999998e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_3311  N-acetylmuramoyl-L-alanine amidase  42.14 
 
 
591 aa  116  1.9999999999999998e-25  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_006274  BCZK2982  N-acetylmuramoyl-L-alanine amidase and S-layer protein fusion  42.14 
 
 
591 aa  117  1.9999999999999998e-25  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0777  N-acetylmuramoyl-L-alanine amidase  43.75 
 
 
579 aa  117  1.9999999999999998e-25  Bacillus cereus E33L  Bacteria  decreased coverage  0.00112193  n/a   
 
 
-
 
NC_005957  BT9727_3111  N-acetylmuramoyl-L-alanine amidase  35.68 
 
 
539 aa  116  1.9999999999999998e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  0.0000635651  n/a   
 
 
-
 
NC_011725  BCB4264_A3268  N-acetylmuramoyl-L-alanine amidase and S-layer protein fusion  41.88 
 
 
599 aa  110  2.0000000000000002e-23  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B1979  N-acetylmuramoyl-L-alanine amidase  41.88 
 
 
599 aa  110  2.0000000000000002e-23  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_4073  prophage lambdaba02, n-acetylmuramoyl-l-alanine amidase family protein 2  41.67 
 
 
234 aa  105  6e-22  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0479691  n/a   
 
 
-
 
NC_005945  BAS3784  prophage LambdaBa02, N-acetylmuramoyl-L-alanine amidase family protein 2  41.67 
 
 
234 aa  105  6e-22  Bacillus anthracis str. Sterne  Bacteria  normal  0.659713  n/a   
 
 
-
 
NC_013216  Dtox_1855  N-acetylmuramoyl-L-alanine amidase  38.12 
 
 
208 aa  93.6  2e-18  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.653374  normal  0.622298 
 
 
-
 
NC_010655  Amuc_1244  N-acetylmuramoyl-L-alanine amidase family 2  38.28 
 
 
243 aa  84.7  9e-16  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_010655  Amuc_1211  N-acetylmuramoyl-L-alanine amidase family 2  39.26 
 
 
223 aa  82  0.000000000000006  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.551528  normal 
 
 
-
 
NC_010655  Amuc_0903  N-acetylmuramoyl-L-alanine amidase family 2  34.48 
 
 
221 aa  80.1  0.00000000000002  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2544  N-acetylmuramoyl-L-alanine amidase family 2  28.07 
 
 
235 aa  80.1  0.00000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000466767  normal 
 
 
-
 
NC_013165  Shel_15380  N-acetylmuramoyl-L-alanine amidase  31.66 
 
 
268 aa  79  0.00000000000005  Slackia heliotrinireducens DSM 20476  Bacteria  hitchhiker  0.00636935  normal  0.0253427 
 
 
-
 
NC_008261  CPF_0587  N-acetylmuramoyl-L-alanine amidase  32.52 
 
 
553 aa  77.4  0.0000000000001  Clostridium perfringens ATCC 13124  Bacteria  normal  0.369962  n/a   
 
 
-
 
NC_011830  Dhaf_0822  N-acetylmuramoyl-L-alanine amidase family 2  36 
 
 
253 aa  63.5  0.000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011774  BCG9842_A0048  N-acetylmuramoyl-L-alanine amidase CwlA  37.25 
 
 
364 aa  60.1  0.00000002  Bacillus cereus G9842  Bacteria  normal  normal  0.0248425 
 
 
-
 
NC_011725  BCB4264_A1549  N-acetylmuramoyl-L-alanine amidase, family 2  36.56 
 
 
176 aa  58.5  0.00000008  Bacillus cereus B4264  Bacteria  unclonable  0.0000174821  n/a   
 
 
-
 
NC_011772  BCG9842_B3796  N-acetylmuramoyl-L-alanine amidase, family 2  36.56 
 
 
176 aa  58.5  0.00000008  Bacillus cereus G9842  Bacteria  unclonable  0.000000000348017  hitchhiker  0.00000000176672 
 
 
-
 
NC_011773  BCAH820_1588  N-acetylmuramoyl-L-alanine amidase, family 2  35.48 
 
 
176 aa  57  0.0000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.00731e-26 
 
 
-
 
NC_011658  BCAH187_A1655  N-acetylmuramoyl-L-alanine amidase, family 2  35.48 
 
 
176 aa  57  0.0000002  Bacillus cereus AH187  Bacteria  unclonable  0.00000000123065  n/a   
 
 
-
 
NC_005957  BT9727_1376  N-acetylmuramoyl-L-alanine amidase  35.48 
 
 
176 aa  57  0.0000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00000000000221455  n/a   
 
 
-
 
NC_003909  BCE_1620  N-acetylmuramoyl-L-alanine amidase  35.48 
 
 
176 aa  57  0.0000002  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.000598062  n/a   
 
 
-
 
NC_006274  BCZK1375  N-acetylmuramoyl-L-alanine amidase  35.48 
 
 
176 aa  57  0.0000002  Bacillus cereus E33L  Bacteria  hitchhiker  0.0000114054  n/a   
 
 
-
 
NC_007954  Sden_1697  N-acetylmuramoyl-L-alanine amidase  38.1 
 
 
272 aa  56.2  0.0000003  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1416  N-acetylmuramoyl-L-alanine amidase  33.68 
 
 
176 aa  56.6  0.0000003  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0000125209  n/a   
 
 
-
 
NC_005945  BAS3089  S-layer protein  41.38 
 
 
338 aa  54.3  0.000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.706009  n/a   
 
 
-
 
NC_005945  BAS1404  N-acetylmuramoyl-L-alanine amidase  36.14 
 
 
156 aa  53.9  0.000002  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000353072  n/a   
 
 
-
 
NC_007530  GBAA_1514  N-acetylmuramoyl-L-alanine amidase  36.14 
 
 
154 aa  53.9  0.000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000258407  n/a   
 
 
-
 
NC_013170  Ccur_02590  N-acetylmuramoyl-L-alanine amidase  28.97 
 
 
339 aa  52.4  0.000005  Cryptobacterium curtum DSM 15641  Bacteria  normal  hitchhiker  0.00000561164 
 
 
-
 
NC_009674  Bcer98_1216  N-acetylmuramoyl-L-alanine amidase  33.33 
 
 
176 aa  52  0.000007  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.0000000134857  n/a   
 
 
-
 
NC_008686  Pden_0578  N-acetylmuramoyl-L-alanine amidase  38.14 
 
 
208 aa  49.3  0.00005  Paracoccus denitrificans PD1222  Bacteria  normal  0.508495  normal  0.467218 
 
 
-
 
NC_007493  RSP_2272  N-acetylmuramoyl-L-alanine amidase  34.78 
 
 
223 aa  48.9  0.00005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.421086  n/a   
 
 
-
 
NC_009674  Bcer98_2581  N-acetylmuramoyl-L-alanine amidase  30.16 
 
 
354 aa  48.9  0.00007  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.0000000866464  n/a   
 
 
-
 
NC_009049  Rsph17029_0947  N-acetylmuramoyl-L-alanine amidase  36.59 
 
 
223 aa  48.5  0.00008  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.177704  normal  0.768005 
 
 
-
 
NC_011901  Tgr7_1955  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  36.46 
 
 
275 aa  48.1  0.0001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2224  N-acetylmuramoyl-L-alanine amidase  28.57 
 
 
219 aa  47.8  0.0001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.719824  normal 
 
 
-
 
NC_009632  SaurJH1_1135  N-acetylmuramoyl-L-alanine amidase  29.45 
 
 
1248 aa  47.4  0.0002  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.00817868  n/a   
 
 
-
 
NC_009487  SaurJH9_1112  N-acetylmuramoyl-L-alanine amidase., mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase  29.45 
 
 
1248 aa  47.4  0.0002  Staphylococcus aureus subsp. aureus JH9  Bacteria  unclonable  0.00229916  n/a   
 
 
-
 
NC_011772  BCG9842_B2405  N-acetylmuramoyl-L-alanine amidase  29.37 
 
 
354 aa  47  0.0002  Bacillus cereus G9842  Bacteria  unclonable  0.00000000414044  normal  0.0779521 
 
 
-
 
NC_009012  Cthe_1611  peptidoglycan-binding LysM  31.54 
 
 
334 aa  47  0.0002  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000000139366  n/a   
 
 
-
 
NC_011666  Msil_3546  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  37.35 
 
 
255 aa  46.6  0.0003  Methylocella silvestris BL2  Bacteria  n/a    normal  0.457198 
 
 
-
 
NC_010003  Pmob_0425  peptidoglycan-binding LysM  30.22 
 
 
334 aa  46.2  0.0004  Petrotoga mobilis SJ95  Bacteria  normal  0.0216464  n/a   
 
 
-
 
NC_009767  Rcas_0212  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  30.34 
 
 
418 aa  45.4  0.0006  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.521983 
 
 
-
 
NC_013216  Dtox_0887  hypothetical protein  38.71 
 
 
322 aa  45.4  0.0007  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.000499515 
 
 
-
 
NC_009523  RoseRS_0690  N-acetylmuramoyl-L-alanine amidase  37.93 
 
 
419 aa  45.1  0.0008  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0163104 
 
 
-
 
NC_002976  SERP0636  bifunctional autolysin  31.63 
 
 
1335 aa  44.7  0.001  Staphylococcus epidermidis RP62A  Bacteria  unclonable  0.0000166594  n/a   
 
 
-
 
NC_009524  PsycPRwf_0549  N-acetylmuramoyl-L-alanine amidase  37.36 
 
 
308 aa  44.3  0.001  Psychrobacter sp. PRwf-1  Bacteria  normal  hitchhiker  0.000000301121 
 
 
-
 
NC_013947  Snas_1933  N-acetylmuramyl-L-alanine amidase negative regulator of AmpC, AmpD  25.13 
 
 
330 aa  43.5  0.002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1219  negative regulator of AmpC, AmpD  35.23 
 
 
227 aa  43.9  0.002  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2018  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  33.75 
 
 
251 aa  43.9  0.002  Chelativorans sp. BNC1  Bacteria  normal  0.169128  n/a   
 
 
-
 
NC_011989  Avi_2906  N-acetylmuramoyl-L-alanine amidase  26.95 
 
 
252 aa  44.3  0.002  Agrobacterium vitis S4  Bacteria  normal  0.923766  n/a   
 
 
-
 
NC_011898  Ccel_2643  peptidase S8/S53 subtilisin kexin sedolisin  25 
 
 
462 aa  43.5  0.003  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2867  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  35 
 
 
253 aa  42.7  0.004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.973804 
 
 
-
 
NC_009719  Plav_2410  N-acetylmuramoyl-L-alanine amidase  28.92 
 
 
247 aa  42.7  0.004  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2607  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  30.61 
 
 
253 aa  43.1  0.004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.559154  normal 
 
 
-
 
NC_011894  Mnod_4910  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  32.91 
 
 
249 aa  42  0.008  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.456045  n/a   
 
 
-
 
NC_009487  SaurJH9_1080  N-acetylmuramoyl-L-alanine amidase  30.47 
 
 
481 aa  41.6  0.01  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.063443  n/a   
 
 
-
 
NC_009632  SaurJH1_0376  N-acetylmuramoyl-L-alanine amidase  30.47 
 
 
481 aa  41.6  0.01  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0367  N-acetylmuramoyl-L-alanine amidase  30.47 
 
 
481 aa  41.6  0.01  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1101  N-acetylmuramoyl-L-alanine amidase  30.47 
 
 
481 aa  41.6  0.01  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.299401  n/a   
 
 
-
 
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