More than 300 homologs were found in PanDaTox collection
for query gene Cthe_0861 on replicon NC_009012
Organism: Clostridium thermocellum ATCC 27405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009012  Cthe_0861  cell envelope-related transcriptional attenuator  100 
 
 
378 aa  764    Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_3102  cell envelope-related transcriptional attenuator  32.6 
 
 
311 aa  119  7e-26  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2378  cell envelope-related function transcriptional attenuator  35.04 
 
 
437 aa  114  2.0000000000000002e-24  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0983623  n/a   
 
 
-
 
NC_008262  CPR_2090  transcription regulator LytR-like protein  34.51 
 
 
437 aa  114  4.0000000000000004e-24  Clostridium perfringens SM101  Bacteria  normal  0.853394  n/a   
 
 
-
 
NC_009012  Cthe_0727  cell envelope-related transcriptional attenuator  30.51 
 
 
308 aa  106  6e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0775994  n/a   
 
 
-
 
NC_011898  Ccel_0666  cell envelope-related transcriptional attenuator  27.57 
 
 
377 aa  104  3e-21  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2604  cell envelope-related transcriptional attenuator  30.84 
 
 
471 aa  104  3e-21  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.22991 
 
 
-
 
NC_008346  Swol_1921  cell envelope-related transcriptional attenuator  32.31 
 
 
406 aa  102  1e-20  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.116318  n/a   
 
 
-
 
NC_011726  PCC8801_1109  cell envelope-related transcriptional attenuator  32.13 
 
 
481 aa  98.6  2e-19  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  30.34 
 
 
319 aa  98.2  2e-19  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_013161  Cyan8802_1138  cell envelope-related transcriptional attenuator  32.13 
 
 
481 aa  98.6  2e-19  Cyanothece sp. PCC 8802  Bacteria  normal  0.441684  normal 
 
 
-
 
NC_011729  PCC7424_2953  cell envelope-related transcriptional attenuator  29.83 
 
 
502 aa  97.8  3e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.873931 
 
 
-
 
NC_012034  Athe_1252  cell envelope-related transcriptional attenuator  29.11 
 
 
403 aa  94.7  2e-18  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000912522  n/a   
 
 
-
 
NC_007644  Moth_1399  cell envelope-related transcriptional attenuator  29 
 
 
414 aa  94.4  3e-18  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  28.45 
 
 
419 aa  94.4  3e-18  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_011884  Cyan7425_3856  cell envelope-related transcriptional attenuator  29.96 
 
 
451 aa  93.2  6e-18  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013522  Taci_0893  cell envelope-related transcriptional attenuator  27.27 
 
 
453 aa  92.8  9e-18  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.301121  n/a   
 
 
-
 
NC_011898  Ccel_1717  cell envelope-related transcriptional attenuator  30.37 
 
 
379 aa  92.4  1e-17  Clostridium cellulolyticum H10  Bacteria  normal  0.0474676  n/a   
 
 
-
 
NC_009674  Bcer98_3735  cell envelope-related transcriptional attenuator  28.12 
 
 
383 aa  90.9  3e-17  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1762  cell envelope-like transcriptional attenuator  27.18 
 
 
501 aa  90.5  5e-17  'Nostoc azollae' 0708  Bacteria  normal  0.103676  n/a   
 
 
-
 
NC_014212  Mesil_1572  cell envelope-related transcriptional attenuator  24.55 
 
 
384 aa  88.6  2e-16  Meiothermus silvanus DSM 9946  Bacteria  hitchhiker  0.0072424  normal  0.757675 
 
 
-
 
NC_011830  Dhaf_4100  cell envelope-related transcriptional attenuator  28.52 
 
 
426 aa  87.4  4e-16  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.000000000000199964  n/a   
 
 
-
 
NC_014212  Mesil_2090  cell envelope-related transcriptional attenuator  29.38 
 
 
417 aa  87  4e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_3430  cell envelope-related transcriptional attenuator  28.81 
 
 
439 aa  87  5e-16  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0225853  n/a   
 
 
-
 
NC_011661  Dtur_0400  cell envelope-related transcriptional attenuator  27 
 
 
308 aa  86.3  8e-16  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.000000257107  n/a   
 
 
-
 
NC_003909  BCE_2056  LytR family transcription antiterminator  28.57 
 
 
333 aa  85.5  0.000000000000001  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00905786  n/a   
 
 
-
 
NC_013216  Dtox_4120  cell envelope-related transcriptional attenuator  28.82 
 
 
445 aa  85.9  0.000000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000955467  unclonable  0.000000000378568 
 
 
-
 
NC_006274  BCZK1787  LytR family transcriptional regulator  28.57 
 
 
335 aa  84.7  0.000000000000002  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2873  cell envelope-related transcriptional attenuator  28.25 
 
 
475 aa  84.7  0.000000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS1830  LytR family transcription antiterminator  28.57 
 
 
333 aa  84.7  0.000000000000003  Bacillus anthracis str. Sterne  Bacteria  normal  0.241912  n/a   
 
 
-
 
NC_005957  BT9727_1804  LytR family transcriptional regulator  28.57 
 
 
333 aa  84.7  0.000000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00220424  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1838  cell envelope-related transcriptional attenuator  28.17 
 
 
333 aa  84.3  0.000000000000003  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00343174  n/a   
 
 
-
 
NC_007530  GBAA_1973  LytR family transcription antiterminator  28.57 
 
 
333 aa  84.7  0.000000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1975  transcription antiterminator, LytR family  28.17 
 
 
333 aa  84.3  0.000000000000003  Bacillus cereus B4264  Bacteria  normal  0.258453  n/a   
 
 
-
 
NC_011773  BCAH820_2008  transcription antiterminator, LytR family  28.57 
 
 
333 aa  84.7  0.000000000000003  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  6.0610299999999994e-43 
 
 
-
 
NC_011772  BCG9842_B3352  transcription antiterminator, LytR family  28.17 
 
 
335 aa  84.3  0.000000000000003  Bacillus cereus G9842  Bacteria  hitchhiker  0.0000199263  hitchhiker  0.0000000000000086496 
 
 
-
 
NC_010424  Daud_2095  cell envelope-related transcriptional attenuator  30.87 
 
 
411 aa  84  0.000000000000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0570  cell envelope-related transcriptional attenuator  27.91 
 
 
377 aa  83.6  0.000000000000005  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011658  BCAH187_A2078  transcription antiterminator, LytR family  28.17 
 
 
333 aa  84  0.000000000000005  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000000542577  n/a   
 
 
-
 
NC_007516  Syncc9605_1641  cell envelope-related function transcriptional attenuator  25 
 
 
314 aa  83.6  0.000000000000005  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0125  putative transcriptional regulator  29.11 
 
 
380 aa  83.6  0.000000000000006  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00440963  n/a   
 
 
-
 
NC_009674  Bcer98_1499  cell envelope-related transcriptional attenuator  27.76 
 
 
329 aa  83.2  0.000000000000006  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.000000186761  n/a   
 
 
-
 
NC_013161  Cyan8802_3582  cell envelope-related transcriptional attenuator  27.31 
 
 
492 aa  82.8  0.000000000000008  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2524  cell envelope-related transcriptional attenuator  27.31 
 
 
492 aa  83.2  0.000000000000008  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_2679  cell envelope-like transcriptional attenuator  25.12 
 
 
503 aa  82.4  0.00000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP0640  transcriptional regulator, putative  26.57 
 
 
412 aa  81.6  0.00000000000002  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.00230389  n/a   
 
 
-
 
NC_005945  BAS0572  LytR family transcription antiterminator  25.51 
 
 
337 aa  81.6  0.00000000000002  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0516  LytR family transcriptional regulator  25.51 
 
 
337 aa  81.6  0.00000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0519  cell envelope-related transcriptional attenuator  25.51 
 
 
338 aa  82  0.00000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0605  LytR family transcription antiterminator  25.51 
 
 
333 aa  81.6  0.00000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1232  cell envelope-related transcriptional attenuator  27.27 
 
 
377 aa  81.6  0.00000000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.113674  normal 
 
 
-
 
NC_011773  BCAH820_0661  transcription antiterminator, LytR family  25.51 
 
 
338 aa  82  0.00000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.34714e-25 
 
 
-
 
NC_011899  Hore_13390  cell envelope-related transcriptional attenuator  27.44 
 
 
405 aa  81.3  0.00000000000003  Halothermothrix orenii H 168  Bacteria  normal  0.557039  n/a   
 
 
-
 
NC_011658  BCAH187_A0732  transcription antiterminator, LytR family  25.51 
 
 
338 aa  81.3  0.00000000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0643  transcription antiterminator, LytR family  25.51 
 
 
338 aa  80.9  0.00000000000003  Bacillus cereus B4264  Bacteria  normal  0.849345  n/a   
 
 
-
 
NC_011772  BCG9842_B4695  transcription antiterminator, LytR family  25.51 
 
 
338 aa  81.3  0.00000000000003  Bacillus cereus G9842  Bacteria  normal  0.541641  hitchhiker  0.0000000308245 
 
 
-
 
NC_010718  Nther_2377  cell envelope-related transcriptional attenuator  25.46 
 
 
344 aa  80.5  0.00000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.00145979  normal 
 
 
-
 
NC_008312  Tery_1857  cell envelope-related transcriptional attenuator  25.48 
 
 
456 aa  80.9  0.00000000000004  Trichodesmium erythraeum IMS101  Bacteria  normal  0.046941  normal 
 
 
-
 
NC_006274  BCZK0516  LytR family transcriptional regulator  25.1 
 
 
337 aa  80.1  0.00000000000006  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1360  cell envelope-related transcriptional attenuator  27.35 
 
 
436 aa  80.1  0.00000000000006  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  25.98 
 
 
377 aa  79.7  0.00000000000007  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0673  LytR family transcription antiterminator  24.7 
 
 
337 aa  79.7  0.00000000000009  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  25.59 
 
 
375 aa  79.3  0.0000000000001  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  25.59 
 
 
375 aa  79.3  0.0000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  25.59 
 
 
375 aa  79.3  0.0000000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_3223  cell envelope-like transcriptional attenuator  28.51 
 
 
471 aa  79.3  0.0000000000001  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  25.59 
 
 
375 aa  79.3  0.0000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3046  cell envelope-related transcriptional attenuator  27.18 
 
 
322 aa  78.2  0.0000000000002  Geobacillus sp. WCH70  Bacteria  normal  0.634845  n/a   
 
 
-
 
NC_011773  BCAH820_5288  transcription antiterminator, LytR family  25.59 
 
 
375 aa  78.6  0.0000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000327862 
 
 
-
 
NC_011725  BCB4264_A5387  membrane-bound transcriptional regulator LytR  25.75 
 
 
299 aa  78.6  0.0000000000002  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_1715  transcriptional regulator  26.34 
 
 
374 aa  78.6  0.0000000000002  Lactobacillus gasseri ATCC 33323  Bacteria  normal  hitchhiker  0.00565214 
 
 
-
 
NC_013946  Mrub_2282  cell envelope-related transcriptional attenuator  25.45 
 
 
389 aa  78.2  0.0000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  0.072814  hitchhiker  0.000000103578 
 
 
-
 
NC_009487  SaurJH9_1115  hypothetical protein  26.48 
 
 
405 aa  78.6  0.0000000000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.108667  n/a   
 
 
-
 
NC_009632  SaurJH1_1138  transcription attenuator LytR  26.48 
 
 
405 aa  78.6  0.0000000000002  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.195072  n/a   
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  25.2 
 
 
377 aa  78.6  0.0000000000002  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1973  cell envelope-related transcriptional attenuator  27.87 
 
 
418 aa  78.6  0.0000000000002  Ammonifex degensii KC4  Bacteria  normal  0.554316  n/a   
 
 
-
 
NC_008820  P9303_09711  membrane bound transcriptional regulator-like protein  26.52 
 
 
298 aa  77.8  0.0000000000003  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_011658  BCAH187_A5436  membrane-bound transcriptional regulator LytR  27.23 
 
 
302 aa  77.4  0.0000000000004  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0369  cell envelope-related transcriptional attenuator  25.32 
 
 
356 aa  77  0.0000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.117824  normal  0.3088 
 
 
-
 
NC_005957  BT9727_4947  membrane-bound transcriptional regulator LytR  27.19 
 
 
304 aa  76.3  0.0000000000009  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0889022  n/a   
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  26.77 
 
 
374 aa  75.9  0.000000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5640  transcription antiterminator, LytR family  24.8 
 
 
372 aa  74.7  0.000000000002  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000247251 
 
 
-
 
NC_009674  Bcer98_0523  cell envelope-related transcriptional attenuator  24.7 
 
 
337 aa  75.5  0.000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4992  cell envelope-related transcriptional attenuator  26.46 
 
 
374 aa  75.5  0.000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3272  membrane-bound transcriptional regulator LytR  23.25 
 
 
310 aa  74.3  0.000000000003  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000512755  n/a   
 
 
-
 
NC_009523  RoseRS_0131  cell envelope-related transcriptional attenuator  23.5 
 
 
353 aa  74.3  0.000000000003  Roseiflexus sp. RS-1  Bacteria  normal  0.763008  normal 
 
 
-
 
NC_007604  Synpcc7942_0961  cell envelope-related function transcriptional attenuator  24.24 
 
 
337 aa  74.3  0.000000000003  Synechococcus elongatus PCC 7942  Bacteria  normal  0.472241  normal 
 
 
-
 
NC_010001  Cphy_3892  cell envelope-related transcriptional attenuator  27.31 
 
 
453 aa  74.3  0.000000000003  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0411  cell envelope-like transcriptional attenuator  24.79 
 
 
472 aa  73.6  0.000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.207765 
 
 
-
 
NC_013411  GYMC61_3243  cell envelope-related transcriptional attenuator  24.42 
 
 
335 aa  73.9  0.000000000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013203  Apar_0187  cell envelope-related transcriptional attenuator  27.7 
 
 
563 aa  73.2  0.000000000007  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.234515 
 
 
-
 
NC_009972  Haur_1198  cell envelope-related transcriptional attenuator  25.85 
 
 
585 aa  73.2  0.000000000007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5355  membrane-bound transcriptional regulator LytR  26.52 
 
 
303 aa  73.2  0.000000000007  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009674  Bcer98_0803  cell envelope-related transcriptional attenuator  23.08 
 
 
317 aa  72.8  0.00000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1875  cell envelope-related transcriptional attenuator  24.78 
 
 
344 aa  72  0.00000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5383  membrane-bound transcriptional regulator LytR  24.46 
 
 
302 aa  71.6  0.00000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5115  membrane-bound transcriptional regulator LytR  26.52 
 
 
303 aa  71.6  0.00000000002  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5506  membrane-bound transcriptional regulator LytR  26.52 
 
 
303 aa  71.6  0.00000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00691653  n/a   
 
 
-
 
NC_011772  BCG9842_B5566  membrane-bound transcriptional regulator LytR  26.32 
 
 
304 aa  71.6  0.00000000002  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0412  cell envelope-related transcriptional attenuator  23.87 
 
 
491 aa  70.9  0.00000000003  Acidothermus cellulolyticus 11B  Bacteria  normal  0.245301  normal 
 
 
-
 
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