12 homologs were found in PanDaTox collection
for query gene Cpin_3472 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_3472  hypothetical protein  100 
 
 
1283 aa  2621    Chitinophaga pinensis DSM 2588  Bacteria  normal  0.73031  normal  0.526995 
 
 
-
 
NC_013132  Cpin_3557  hypothetical protein  24.4 
 
 
898 aa  127  2e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.170142  normal  0.0208134 
 
 
-
 
NC_008757  Pnap_4437  hypothetical protein  21.72 
 
 
984 aa  67.8  0.000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.698757 
 
 
-
 
NC_011884  Cyan7425_3478  WD-40 repeat protein  27.54 
 
 
1208 aa  58.9  0.0000006  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.590785 
 
 
-
 
NC_007413  Ava_2629  Fis family transcriptional regulator  27.31 
 
 
1221 aa  51.6  0.0001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0193255  normal 
 
 
-
 
NC_008726  Mvan_1929  regulatory protein, LuxR  28.85 
 
 
862 aa  48.1  0.001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_1234  WD-40 repeat protein  24.66 
 
 
1188 aa  47  0.002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.593825 
 
 
-
 
NC_009487  SaurJH9_1864  peptidase S1 and S6, chymotrypsin/Hap  31.25 
 
 
235 aa  46.2  0.004  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.825856  n/a   
 
 
-
 
NC_009632  SaurJH1_1899  peptidase S1 and S6 chymotrypsin/Hap  31.25 
 
 
235 aa  46.2  0.004  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_0103  WD-40 repeat-containing protein  23.31 
 
 
1209 aa  45.4  0.007  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.572371  n/a   
 
 
-
 
NC_011729  PCC7424_3256  transcriptional regulator, LuxR family  24.8 
 
 
438 aa  45.4  0.007  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013947  Snas_6346  transcriptional regulator, SARP family  34.88 
 
 
1034 aa  45.1  0.01  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>