14 homologs were found in PanDaTox collection
for query gene Cpin_3007 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_3007  hypothetical protein  100 
 
 
503 aa  1038    Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4142  hypothetical protein  43.34 
 
 
1409 aa  413  1e-114  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.369154  normal  0.17727 
 
 
-
 
NC_013132  Cpin_4386  hypothetical protein  37.65 
 
 
1179 aa  327  3e-88  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.241332  decreased coverage  0.00292232 
 
 
-
 
NC_013132  Cpin_1395  YD repeat protein  37.84 
 
 
1463 aa  325  2e-87  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4641  YD repeat protein  36.7 
 
 
1461 aa  315  9.999999999999999e-85  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.32679  hitchhiker  0.00117662 
 
 
-
 
NC_013132  Cpin_7099  YD repeat protein  43.79 
 
 
1480 aa  302  1e-80  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00495038  normal 
 
 
-
 
NC_013132  Cpin_3185  hypothetical protein  29.66 
 
 
2418 aa  209  1e-52  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0865533 
 
 
-
 
NC_013061  Phep_1098  hypothetical protein  33.19 
 
 
1172 aa  175  1.9999999999999998e-42  Pedobacter heparinus DSM 2366  Bacteria  unclonable  0.00467719  unclonable  0.0000000000319304 
 
 
-
 
NC_013061  Phep_1050  YD repeat-containing protein  33.19 
 
 
1157 aa  174  3.9999999999999995e-42  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2076  YD repeat protein  32.91 
 
 
1740 aa  144  4e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2123  YD repeat protein  27.49 
 
 
1073 aa  100  8e-20  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3729  YD repeat-/RHS repeat-containing protein  27.13 
 
 
1753 aa  98.2  3e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_2668  hypothetical protein  27.08 
 
 
1743 aa  97.8  4e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4225  hypothetical protein  40.48 
 
 
809 aa  57.8  0.0000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.317527  normal 
 
 
-
 
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