260 homologs were found in PanDaTox collection
for query gene Cphy_3590 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_3590  extracellular solute-binding protein  100 
 
 
438 aa  898    Clostridium phytofermentans ISDg  Bacteria  unclonable  0.0000000122441  n/a   
 
 
-
 
NC_013530  Xcel_0917  extracellular solute-binding protein family 1  55.98 
 
 
455 aa  459  9.999999999999999e-129  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.728334  n/a   
 
 
-
 
NC_013411  GYMC61_0531  extracellular solute-binding protein family 1  38.9 
 
 
429 aa  310  4e-83  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010003  Pmob_0828  extracellular solute-binding protein  37.53 
 
 
424 aa  306  4.0000000000000004e-82  Petrotoga mobilis SJ95  Bacteria  normal  0.142269  n/a   
 
 
-
 
NC_011661  Dtur_0508  extracellular solute-binding protein family 1  39.04 
 
 
421 aa  303  6.000000000000001e-81  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.0000506303  n/a   
 
 
-
 
NC_013421  Pecwa_0972  extracellular solute-binding protein family 1  39.34 
 
 
421 aa  297  2e-79  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0736  extracellular solute-binding protein family 1  39.59 
 
 
421 aa  297  3e-79  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4136  extracellular solute-binding protein  36.45 
 
 
424 aa  287  2e-76  Sinorhizobium medicae WSM419  Bacteria  normal  0.518326  normal 
 
 
-
 
NC_013947  Snas_2733  extracellular solute-binding protein family 1  26.64 
 
 
434 aa  146  7.0000000000000006e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0602915  normal  0.13145 
 
 
-
 
NC_013131  Caci_2031  extracellular solute-binding protein family 1  26.92 
 
 
442 aa  140  6e-32  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.298737 
 
 
-
 
NC_009972  Haur_3641  extracellular solute-binding protein  24.18 
 
 
444 aa  124  3e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1215  extracellular solute-binding protein family 1  26.13 
 
 
446 aa  122  1.9999999999999998e-26  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.0000064062  n/a   
 
 
-
 
NC_013946  Mrub_2808  extracellular solute-binding protein family 1  26.44 
 
 
430 aa  117  3e-25  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.512241 
 
 
-
 
NC_011371  Rleg2_6524  extracellular solute-binding protein family 1  24.16 
 
 
424 aa  106  8e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.514278  normal  0.451088 
 
 
-
 
NC_012852  Rleg_6112  extracellular solute-binding protein family 1  24.16 
 
 
424 aa  105  1e-21  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.521338  normal 
 
 
-
 
NC_013946  Mrub_0284  extracellular solute-binding protein family 1  24.23 
 
 
410 aa  98.6  2e-19  Meiothermus ruber DSM 1279  Bacteria  normal  0.0514987  normal 
 
 
-
 
NC_013201  Hmuk_3222  extracellular solute-binding protein family 1  29.12 
 
 
457 aa  94.4  3e-18  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.950328  normal  0.818094 
 
 
-
 
NC_009767  Rcas_1879  extracellular solute-binding protein  26.1 
 
 
452 aa  94  5e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.29051 
 
 
-
 
NC_009523  RoseRS_2896  extracellular solute-binding protein  25.85 
 
 
452 aa  90.5  6e-17  Roseiflexus sp. RS-1  Bacteria  normal  0.034507  normal 
 
 
-
 
NC_014165  Tbis_0842  extracellular solute-binding protein family 1  25.18 
 
 
432 aa  90.5  6e-17  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.516605 
 
 
-
 
NC_007908  Rfer_1099  extracellular solute-binding protein  22.49 
 
 
420 aa  89.7  9e-17  Rhodoferax ferrireducens T118  Bacteria  unclonable  0.000000491601  n/a   
 
 
-
 
NC_009832  Spro_2845  extracellular solute-binding protein  25.52 
 
 
424 aa  86.3  0.000000000000001  Serratia proteamaculans 568  Bacteria  normal  0.35811  normal  0.0339661 
 
 
-
 
NC_013595  Sros_6584  ABC transporter sugar binding protein  25.24 
 
 
437 aa  84.7  0.000000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0130  extracellular solute-binding protein  26.7 
 
 
462 aa  82.8  0.00000000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_04270  extracellular solute-binding protein family 1  21.41 
 
 
418 aa  79  0.0000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1454  extracellular solute-binding protein family 1  25.75 
 
 
445 aa  78.6  0.0000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.71759  normal 
 
 
-
 
NC_013093  Amir_0403  extracellular solute-binding protein family 1  29.62 
 
 
426 aa  78.2  0.0000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.512139  n/a   
 
 
-
 
NC_010816  BLD_1008  MalE-type ABC sugar transport system periplasmic component  22.45 
 
 
449 aa  77  0.0000000000006  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_0922  MalE-type ABC sugar transport system periplasmic component  24.93 
 
 
447 aa  73.9  0.000000000006  Bifidobacterium longum DJO10A  Bacteria  normal  0.755265  n/a   
 
 
-
 
NC_008010  Dgeo_2859  extracellular solute-binding protein  23.12 
 
 
417 aa  73.2  0.000000000008  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.511665  n/a   
 
 
-
 
NC_013174  Jden_0101  extracellular solute-binding protein family 1  25.36 
 
 
438 aa  72.4  0.00000000001  Jonesia denitrificans DSM 20603  Bacteria  normal  0.494877  normal  0.060225 
 
 
-
 
NC_013131  Caci_4419  extracellular solute-binding protein family 1  24.52 
 
 
456 aa  72.4  0.00000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7173  sugar transport system (sugar-binding protein)  22.12 
 
 
433 aa  71.6  0.00000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.119283 
 
 
-
 
NC_013525  Tter_0829  extracellular solute-binding protein family 1  26.2 
 
 
504 aa  71.2  0.00000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008262  CPR_0476  ABC transporter, substrate-binding protein  25 
 
 
427 aa  71.2  0.00000000003  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3566  extracellular solute-binding protein family 1  25.54 
 
 
434 aa  69.3  0.0000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0143758 
 
 
-
 
NC_013131  Caci_5330  extracellular solute-binding protein family 1  24.83 
 
 
438 aa  69.3  0.0000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.489769  normal  0.341368 
 
 
-
 
NC_011368  Rleg2_5331  extracellular solute-binding protein family 1  28.25 
 
 
424 aa  69.3  0.0000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3775  extracellular solute-binding protein family 1  26.17 
 
 
459 aa  68.6  0.0000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.137854  normal 
 
 
-
 
NC_007333  Tfu_0934  putative solute binding lipoprotein  22.92 
 
 
432 aa  68.2  0.0000000003  Thermobifida fusca YX  Bacteria  normal  0.46058  n/a   
 
 
-
 
NC_012848  Rleg_5048  extracellular solute-binding protein family 1  27.07 
 
 
424 aa  68.2  0.0000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.133709  normal 
 
 
-
 
NC_013521  Sked_06560  ABC-type sugar transport system, periplasmic component  24.17 
 
 
453 aa  67.8  0.0000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2037  extracellular solute-binding protein family 1  29.91 
 
 
430 aa  66.6  0.0000000009  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_11600  ABC-type sugar transport system, periplasmic component  24.38 
 
 
444 aa  65.9  0.000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.558288  normal  0.039331 
 
 
-
 
NC_011981  Avi_7341  sugar ABC transporter sugar-binding protein  24.72 
 
 
426 aa  66.2  0.000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03920  carbohydrate-binding protein  24.46 
 
 
437 aa  65.1  0.000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_012028  Hlac_2862  extracellular solute-binding protein family 1  22.82 
 
 
467 aa  64.7  0.000000003  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_012917  PC1_1904  extracellular solute-binding protein family 1  28.46 
 
 
429 aa  64.7  0.000000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.172949  n/a   
 
 
-
 
NC_008699  Noca_3683  extracellular solute-binding protein  23.05 
 
 
432 aa  64.3  0.000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_0923  MalE-type ABC sugar transport system periplasmic component  22.45 
 
 
450 aa  63.9  0.000000005  Bifidobacterium longum DJO10A  Bacteria  normal  0.293658  n/a   
 
 
-
 
NC_010003  Pmob_0954  extracellular solute-binding protein  23.34 
 
 
399 aa  64.3  0.000000005  Petrotoga mobilis SJ95  Bacteria  normal  0.0450213  n/a   
 
 
-
 
NC_013174  Jden_0310  extracellular solute-binding protein family 1  25.61 
 
 
440 aa  63.5  0.000000007  Jonesia denitrificans DSM 20603  Bacteria  normal  0.0877495  normal  0.113221 
 
 
-
 
NC_011886  Achl_0399  extracellular solute-binding protein family 1  23.55 
 
 
430 aa  63.2  0.000000009  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013526  Tter_2644  extracellular solute-binding protein family 1  25.33 
 
 
431 aa  62.4  0.00000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2640  extracellular solute-binding protein  23.21 
 
 
436 aa  62  0.00000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.932575  normal 
 
 
-
 
NC_014151  Cfla_2399  extracellular solute-binding protein family 1  27.52 
 
 
433 aa  62  0.00000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00275508 
 
 
-
 
NC_013093  Amir_1927  extracellular solute-binding protein family 1  20.88 
 
 
439 aa  61.6  0.00000003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1064  extracellular solute-binding protein  21.84 
 
 
480 aa  61.6  0.00000003  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.075314 
 
 
-
 
NC_009664  Krad_3964  extracellular solute-binding protein family 1  24.31 
 
 
435 aa  61.2  0.00000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.340566  normal  0.592754 
 
 
-
 
NC_010816  BLD_1762  MalE-type ABC sugar transport system periplasmic component  27.84 
 
 
438 aa  60.5  0.00000005  Bifidobacterium longum DJO10A  Bacteria  decreased coverage  0.0000740157  n/a   
 
 
-
 
NC_013093  Amir_2574  extracellular solute-binding protein family 1  24.17 
 
 
449 aa  60.8  0.00000005  Actinosynnema mirum DSM 43827  Bacteria  normal  0.316894  n/a   
 
 
-
 
NC_013172  Bfae_04000  ABC-type sugar transport system, periplasmic component  24.18 
 
 
445 aa  60.5  0.00000006  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0437  extracellular solute-binding protein family 1  23.21 
 
 
424 aa  60.1  0.00000007  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000010114  n/a   
 
 
-
 
NC_007413  Ava_3685  extracellular solute-binding protein  23.72 
 
 
432 aa  60.1  0.00000008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1966  extracellular solute-binding protein family 1  28.44 
 
 
430 aa  60.1  0.00000008  Dickeya zeae Ech1591  Bacteria  normal  0.810983  n/a   
 
 
-
 
NC_013947  Snas_6282  extracellular solute-binding protein family 1  23.81 
 
 
433 aa  60.1  0.00000008  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5711  sugar uptake ABC transporter periplasmic solute-binding protein precursor  22.9 
 
 
448 aa  59.7  0.00000009  Agrobacterium vitis S4  Bacteria  normal  0.188634  n/a   
 
 
-
 
NC_004578  PSPTO_0364  sugar ABC transporter, periplasmic sugar-binding protein, putative  24.52 
 
 
438 aa  59.3  0.0000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0556  extracellular solute-binding protein family 1  22.74 
 
 
430 aa  59.7  0.0000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.71623 
 
 
-
 
NC_013421  Pecwa_2197  extracellular solute-binding protein family 1  27.27 
 
 
429 aa  59.3  0.0000001  Pectobacterium wasabiae WPP163  Bacteria  normal  0.700843  n/a   
 
 
-
 
NC_013526  Tter_2315  extracellular solute-binding protein family 1  23.91 
 
 
503 aa  58.9  0.0000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0552  extracellular solute-binding protein  31.87 
 
 
445 aa  58.5  0.0000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.764632 
 
 
-
 
NC_012669  Bcav_2837  extracellular solute-binding protein family 1  27.07 
 
 
441 aa  58.5  0.0000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0236558  normal 
 
 
-
 
NC_012669  Bcav_2719  extracellular solute-binding protein family 1  29.17 
 
 
434 aa  58.2  0.0000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.233137 
 
 
-
 
NC_014165  Tbis_1105  extracellular solute-binding protein family 1  23.47 
 
 
443 aa  58.2  0.0000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.698754  normal  0.0706181 
 
 
-
 
NC_013721  HMPREF0424_1316  extracellular solute-binding protein  25.29 
 
 
423 aa  57.4  0.0000005  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_010816  BLD_0921  MalE-type ABC sugar transport system periplasmic component  24.13 
 
 
458 aa  57  0.0000006  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3146  extracellular solute-binding protein  24.92 
 
 
424 aa  57  0.0000006  Arthrobacter sp. FB24  Bacteria  normal  0.0629231  n/a   
 
 
-
 
NC_009012  Cthe_1020  extracellular solute-binding protein  26.36 
 
 
459 aa  57  0.0000006  Clostridium thermocellum ATCC 27405  Bacteria  unclonable  0.0000000124434  n/a   
 
 
-
 
NC_013517  Sterm_4040  extracellular solute-binding protein family 1  24.92 
 
 
434 aa  57.4  0.0000006  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2569  extracellular solute-binding protein  29.02 
 
 
523 aa  57  0.0000006  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1785  extracellular solute-binding protein family 1  23.56 
 
 
424 aa  57  0.0000006  Actinosynnema mirum DSM 43827  Bacteria  normal  0.155279  n/a   
 
 
-
 
NC_010320  Teth514_2201  extracellular solute-binding protein  25.33 
 
 
420 aa  57  0.0000007  Thermoanaerobacter sp. X514  Bacteria  normal  0.455559  n/a   
 
 
-
 
NC_004578  PSPTO_2707  mannitol ABC transporter, periplasmic mannitol-binding protein  21.93 
 
 
440 aa  56.6  0.0000008  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.069342  n/a   
 
 
-
 
NC_007947  Mfla_2348  extracellular solute-binding protein  25 
 
 
363 aa  56.6  0.0000008  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.585172 
 
 
-
 
NC_013131  Caci_4955  extracellular solute-binding protein family 1  24.27 
 
 
458 aa  56.6  0.0000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.117227  normal 
 
 
-
 
NC_012669  Bcav_4059  extracellular solute-binding protein family 1  22.2 
 
 
440 aa  56.6  0.0000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0777  extracellular solute-binding protein  26.81 
 
 
428 aa  56.6  0.0000009  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK1634  sugar ABC transporter, sugar-binding protein  22.68 
 
 
416 aa  56.2  0.000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_15060  ABC-type sugar transport system, periplasmic component  25.55 
 
 
457 aa  55.8  0.000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.138683  normal 
 
 
-
 
NC_013093  Amir_4241  extracellular solute-binding protein family 1  25.79 
 
 
422 aa  56.2  0.000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3308  ABC-type sugar transport system periplasmic component-like protein  23.06 
 
 
450 aa  56.2  0.000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.190223 
 
 
-
 
NC_010320  Teth514_1115  extracellular solute-binding protein  22.46 
 
 
439 aa  56.2  0.000001  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.0000327347  n/a   
 
 
-
 
NC_007644  Moth_1484  extracellular solute-binding protein  25.94 
 
 
444 aa  55.5  0.000002  Moorella thermoacetica ATCC 39073  Bacteria  unclonable  0.00000000000980441  normal 
 
 
-
 
NC_014165  Tbis_1891  extracellular solute-binding protein family 1  22.01 
 
 
447 aa  55.8  0.000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.276259 
 
 
-
 
NC_013510  Tcur_1736  extracellular solute-binding protein family 1  23.36 
 
 
435 aa  55.5  0.000002  Thermomonospora curvata DSM 43183  Bacteria  normal  0.395658  n/a   
 
 
-
 
NC_009636  Smed_2358  extracellular solute-binding protein  25.52 
 
 
441 aa  55.1  0.000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_9091  ABC-type sugar transport system periplasmic component-like protein  24.1 
 
 
422 aa  55.1  0.000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.306335  normal 
 
 
-
 
NC_010501  PputW619_2041  extracellular solute-binding protein  23.02 
 
 
436 aa  55.5  0.000002  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_0323  family 1 extracellular solute-binding protein  23.56 
 
 
432 aa  54.7  0.000003  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
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