More than 300 homologs were found in PanDaTox collection
for query gene Cphy_3118 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_3118  LytTR family two component transcriptional regulator  100 
 
 
236 aa  484  1e-136  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00259319  n/a   
 
 
-
 
NC_002967  TDE0033  DNA-binding response regulator  31.65 
 
 
239 aa  144  1e-33  Treponema denticola ATCC 35405  Bacteria  hitchhiker  0.00150761  n/a   
 
 
-
 
NC_013216  Dtox_2345  two component transcriptional regulator, LytTR family  33.33 
 
 
240 aa  120  9.999999999999999e-27  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.681344 
 
 
-
 
NC_011898  Ccel_2646  two component transcriptional regulator, LytTR family  28.63 
 
 
252 aa  119  3e-26  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2425  two component transcriptional regulator, LytTR family  27.92 
 
 
242 aa  113  3e-24  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1697  two component transcriptional regulator, LytTR family  30.9 
 
 
240 aa  112  6e-24  Eggerthella lenta DSM 2243  Bacteria  normal  0.325505  normal 
 
 
-
 
NC_008261  CPF_1752  LytTr family DNA-binding response regulator  32.11 
 
 
236 aa  108  9.000000000000001e-23  Clostridium perfringens ATCC 13124  Bacteria  decreased coverage  0.000046925  n/a   
 
 
-
 
NC_008262  CPR_1482  LytTr family DNA-binding response regulator  31.82 
 
 
236 aa  108  1e-22  Clostridium perfringens SM101  Bacteria  hitchhiker  0.00010327  n/a   
 
 
-
 
NC_008261  CPF_0498  DNA-binding response regulator  29.73 
 
 
238 aa  107  2e-22  Clostridium perfringens ATCC 13124  Bacteria  decreased coverage  0.0000000794566  n/a   
 
 
-
 
NC_011898  Ccel_1167  two component transcriptional regulator, LytTR family  30.34 
 
 
245 aa  105  6e-22  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0486  DNA-binding response regulator  30.18 
 
 
238 aa  105  6e-22  Clostridium perfringens SM101  Bacteria  normal  0.0347807  n/a   
 
 
-
 
NC_010001  Cphy_1600  LytTR family two component transcriptional regulator  28.22 
 
 
245 aa  103  2e-21  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_02240  response regulator of the LytR/AlgR family  26.05 
 
 
237 aa  99.4  4e-20  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6125  two component transcriptional regulator, LytTR family  27.54 
 
 
238 aa  94  2e-18  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0468  two component transcriptional regulator, LytTR family  29.38 
 
 
244 aa  93.6  3e-18  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5358  two component transcriptional regulator, LytTR family  28.94 
 
 
235 aa  92.8  4e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1994  two component transcriptional regulator, LytTR family  28.57 
 
 
236 aa  92  7e-18  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5383  two component transcriptional regulator, LytTR family  28.12 
 
 
235 aa  90.5  2e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_2270  two component transcriptional regulator, LytTR family  27.31 
 
 
234 aa  90.1  3e-17  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2791  two component transcriptional regulator, LytTR family  29.47 
 
 
224 aa  86.7  3e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0891261 
 
 
-
 
NC_008532  STER_0583  response regulator  25.64 
 
 
236 aa  85.5  7e-16  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_0428  two component transcriptional regulator, LytTR family  25.97 
 
 
237 aa  85.1  9e-16  Eggerthella lenta DSM 2243  Bacteria  normal  0.472628  hitchhiker  0.000034032 
 
 
-
 
NC_013132  Cpin_4010  two component transcriptional regulator, LytTR family  30.53 
 
 
231 aa  82.8  0.000000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0569074  decreased coverage  0.00157623 
 
 
-
 
NC_008541  Arth_1375  response regulator receiver protein  25.27 
 
 
239 aa  82.8  0.000000000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_04910  two-component system response regulator  29.51 
 
 
236 aa  82.4  0.000000000000005  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.981835  n/a   
 
 
-
 
NC_014165  Tbis_1330  LytTR family two component transcriptional regulator  27.08 
 
 
261 aa  82  0.000000000000008  Thermobispora bispora DSM 43833  Bacteria  normal  0.80792  hitchhiker  0.00674538 
 
 
-
 
NC_013730  Slin_2242  two component transcriptional regulator, LytTR family  27.27 
 
 
244 aa  80.9  0.00000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4084  two component transcriptional regulator, LytTR family  31.12 
 
 
244 aa  80.1  0.00000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.445273  normal  0.0209217 
 
 
-
 
NC_013037  Dfer_3280  two component transcriptional regulator, LytTR family  29.33 
 
 
245 aa  79.3  0.00000000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3790  two component transcriptional regulator, LytTR family  28.12 
 
 
240 aa  78.6  0.00000000000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.540237  normal  0.0384587 
 
 
-
 
NC_010001  Cphy_0974  LytTR family two component transcriptional regulator  25.31 
 
 
237 aa  78.6  0.00000000000009  Clostridium phytofermentans ISDg  Bacteria  normal  0.118297  n/a   
 
 
-
 
NC_013132  Cpin_0577  two component transcriptional regulator, LytTR family  27.57 
 
 
231 aa  76.6  0.0000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6269  two component transcriptional regulator, LytTR family  28.18 
 
 
228 aa  76.6  0.0000000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_1834  LytTR family two component transcriptional regulator  27.27 
 
 
237 aa  76.6  0.0000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013733  Slin_6983  two component transcriptional regulator, LytTR family  28.36 
 
 
230 aa  76.3  0.0000000000004  Spirosoma linguale DSM 74  Bacteria  normal  0.659349  normal 
 
 
-
 
NC_009380  Strop_4494  LytTr DNA-binding region  26.02 
 
 
250 aa  76.3  0.0000000000004  Salinispora tropica CNB-440  Bacteria  normal  0.0706486  normal  0.304613 
 
 
-
 
NC_009441  Fjoh_0991  LytTR family two component transcriptional regulator  27.27 
 
 
229 aa  76.3  0.0000000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2858  response regulator receiver  26.22 
 
 
264 aa  75.9  0.0000000000005  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_4189  LytTr DNA-binding region  25.7 
 
 
231 aa  75.9  0.0000000000006  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.537023 
 
 
-
 
NC_013061  Phep_1841  response regulator receiver  26.8 
 
 
245 aa  75.9  0.0000000000006  Pedobacter heparinus DSM 2366  Bacteria  normal  hitchhiker  0.0000216203 
 
 
-
 
NC_009616  Tmel_0114  LytTR family two component transcriptional regulator  27.68 
 
 
226 aa  75.5  0.0000000000006  Thermosipho melanesiensis BI429  Bacteria  normal  0.310837  n/a   
 
 
-
 
NC_011886  Achl_1393  two component transcriptional regulator, LytTR family  23.23 
 
 
238 aa  74.7  0.000000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000000160197 
 
 
-
 
NC_013061  Phep_0588  response regulator receiver  28.57 
 
 
227 aa  74.7  0.000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2575  two-component response regulator  27.53 
 
 
241 aa  74.7  0.000000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_4524  two component transcriptional regulator, LytTR family  27.47 
 
 
240 aa  75.1  0.000000000001  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00000306542  normal  0.871136 
 
 
-
 
NC_009441  Fjoh_3483  LytTR family two component transcriptional regulator  30.27 
 
 
231 aa  75.1  0.000000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.630225  n/a   
 
 
-
 
NC_008340  Mlg_2671  response regulator receiver protein  23.29 
 
 
243 aa  74.3  0.000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  hitchhiker  0.000000000586434 
 
 
-
 
NC_009441  Fjoh_1679  LytTR family two component transcriptional regulator  25.96 
 
 
238 aa  73.9  0.000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4134  LytTR family two component transcriptional regulator  27.55 
 
 
243 aa  73.6  0.000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.291369  n/a   
 
 
-
 
NC_013061  Phep_3124  LytTr DNA-binding region  27.89 
 
 
244 aa  73.6  0.000000000003  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_5008  LytTR family two component transcriptional regulator  23.71 
 
 
250 aa  73.2  0.000000000003  Salinispora arenicola CNS-205  Bacteria  normal  0.135227  hitchhiker  0.0000288771 
 
 
-
 
NC_010424  Daud_0119  response regulator receiver protein  25.65 
 
 
249 aa  73.6  0.000000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_00400  response regulator of the LytR/AlgR family  25.21 
 
 
237 aa  72.8  0.000000000004  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.132657  normal 
 
 
-
 
NC_013159  Svir_12140  response regulator of the LytR/AlgR family  23.92 
 
 
255 aa  71.6  0.000000000009  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_1220  two component transcriptional regulator, LytTR family  24.62 
 
 
238 aa  71.6  0.00000000001  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.132093  n/a   
 
 
-
 
NC_013037  Dfer_0764  two component transcriptional regulator, LytTR family  29.17 
 
 
245 aa  71.6  0.00000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.626213 
 
 
-
 
NC_013132  Cpin_6586  two component transcriptional regulator, LytTR family  27.08 
 
 
246 aa  70.9  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.318104  normal 
 
 
-
 
NC_007969  Pcryo_0765  LytR/AlgR family transcriptional regulator  25.76 
 
 
247 aa  70.5  0.00000000002  Psychrobacter cryohalolentis K5  Bacteria  normal  0.584976  normal  0.255142 
 
 
-
 
NC_013730  Slin_0826  two component transcriptional regulator, LytTR family  23.68 
 
 
235 aa  70.9  0.00000000002  Spirosoma linguale DSM 74  Bacteria  normal  0.398179  normal 
 
 
-
 
NC_008699  Noca_0357  response regulator receiver  22.63 
 
 
249 aa  70.5  0.00000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_6424  two component transcriptional regulator, LytTR family  28.98 
 
 
250 aa  70.9  0.00000000002  Spirosoma linguale DSM 74  Bacteria  normal  0.529726  normal 
 
 
-
 
NC_010718  Nther_1569  two component transcriptional regulator, LytTR family  24.68 
 
 
240 aa  70.1  0.00000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  hitchhiker  0.00000000000000531282 
 
 
-
 
NC_010718  Nther_2142  two component transcriptional regulator, LytTR family  26.8 
 
 
238 aa  69.7  0.00000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_4495  LytTR family two component transcriptional regulator  23.08 
 
 
245 aa  70.1  0.00000000003  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.17015 
 
 
-
 
NC_013730  Slin_1723  two component transcriptional regulator, LytTR family  29.95 
 
 
232 aa  69.7  0.00000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5278  two component transcriptional regulator, LytTR family  25 
 
 
281 aa  69.7  0.00000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.415246  n/a   
 
 
-
 
NC_011071  Smal_0421  two component transcriptional regulator, LytTR family  23.11 
 
 
256 aa  69.3  0.00000000005  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.268274 
 
 
-
 
NC_011899  Hore_01640  two component transcriptional regulator, LytTR family  29.05 
 
 
238 aa  68.9  0.00000000006  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1153  two component transcriptional regulator, LytTR family  23.77 
 
 
299 aa  68.9  0.00000000006  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5230  two component transcriptional regulator, LytTR family  21.94 
 
 
244 aa  68.9  0.00000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.236835  normal  0.031416 
 
 
-
 
NC_013132  Cpin_2060  two component transcriptional regulator, LytTR family  29.67 
 
 
240 aa  68.9  0.00000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_2165  LytTR family two component transcriptional regulator  24.18 
 
 
235 aa  68.6  0.00000000008  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0607611  n/a   
 
 
-
 
NC_013203  Apar_1323  two component transcriptional regulator, LytTR family  27.31 
 
 
237 aa  67.8  0.0000000001  Atopobium parvulum DSM 20469  Bacteria  normal  0.0540721  normal  0.0273831 
 
 
-
 
NC_014165  Tbis_2133  LytTR family two component transcriptional regulator  24.1 
 
 
248 aa  67.8  0.0000000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.565653  normal 
 
 
-
 
NC_009441  Fjoh_3968  LytTR family two component transcriptional regulator  24.56 
 
 
229 aa  68.2  0.0000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0978404  n/a   
 
 
-
 
NC_013037  Dfer_0148  two component transcriptional regulator, LytTR family  27.53 
 
 
251 aa  67  0.0000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.48043 
 
 
-
 
NC_010718  Nther_1924  two component transcriptional regulator, LytTR family  26.19 
 
 
250 aa  67.4  0.0000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_09968  two-component system response regulator protein  28.65 
 
 
235 aa  67  0.0000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4129  two component transcriptional regulator, LytTR family  22.16 
 
 
271 aa  66.6  0.0000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_12230  response regulator of the LytR/AlgR family  29.32 
 
 
242 aa  66.2  0.0000000004  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3628  two component transcriptional regulator, LytTR family  25.95 
 
 
235 aa  66.2  0.0000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0184746 
 
 
-
 
NC_008346  Swol_2400  response regulator receiver protein  25.85 
 
 
236 aa  66.2  0.0000000004  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.14107  n/a   
 
 
-
 
NC_013132  Cpin_1177  two component transcriptional regulator, LytTR family  25.13 
 
 
231 aa  66.2  0.0000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1542  LytTr DNA-binding region  26.13 
 
 
245 aa  66.2  0.0000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.300206 
 
 
-
 
NC_013037  Dfer_0733  two component transcriptional regulator, LytTR family  25.7 
 
 
243 aa  66.2  0.0000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_01160  response regulator of the LytR/AlgR family  24.89 
 
 
238 aa  65.9  0.0000000006  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_2766  two component transcriptional regulator, LytTR family  23.67 
 
 
241 aa  65.5  0.0000000007  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0387  response regulator  22.47 
 
 
261 aa  65.5  0.0000000007  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2329  LytTR family two component transcriptional regulator  24.1 
 
 
255 aa  65.5  0.0000000007  Opitutus terrae PB90-1  Bacteria  normal  0.0531557  decreased coverage  0.00207881 
 
 
-
 
NC_007517  Gmet_2697  LytR/AlgR family transcriptional regulator  22.76 
 
 
240 aa  65.1  0.0000000008  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5598  two component transcriptional regulator, LytTR family  26.37 
 
 
237 aa  65.1  0.0000000009  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.0000105391  normal 
 
 
-
 
NC_011662  Tmz1t_1435  two component transcriptional regulator, LytTR family  22.05 
 
 
264 aa  65.1  0.000000001  Thauera sp. MZ1T  Bacteria  normal  0.314663  n/a   
 
 
-
 
NC_009441  Fjoh_5028  LytTR family two component transcriptional regulator  22.58 
 
 
237 aa  64.7  0.000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.967214  n/a   
 
 
-
 
NC_013595  Sros_6324  response regulator receiver protein  23.35 
 
 
253 aa  65.1  0.000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.48372 
 
 
-
 
NC_007404  Tbd_0231  LytR/AlgR family transcriptional regulator  19.43 
 
 
254 aa  64.7  0.000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.740894 
 
 
-
 
NC_007644  Moth_1964  LytR/AlgR family transcriptional regulator  27.22 
 
 
255 aa  64.3  0.000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.777054 
 
 
-
 
NC_007644  Moth_2172  LytR/AlgR family transcriptional regulator  23.59 
 
 
252 aa  64.7  0.000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0721488  normal  0.0255714 
 
 
-
 
NC_011899  Hore_10420  two component transcriptional regulator, LytTR family  26.47 
 
 
253 aa  65.1  0.000000001  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000460621  n/a   
 
 
-
 
NC_013132  Cpin_3396  two component transcriptional regulator, LytTR family  26.34 
 
 
243 aa  64.7  0.000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.655263 
 
 
-
 
NC_009441  Fjoh_1345  LytTR family two component transcriptional regulator  29.13 
 
 
234 aa  64.7  0.000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
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