More than 300 homologs were found in PanDaTox collection
for query gene Cphy_2139 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_2139  extracellular solute-binding protein  100 
 
 
347 aa  712    Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_0924  extracellular solute-binding protein family 1  44.81 
 
 
334 aa  270  4e-71  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_0923  extracellular solute-binding protein family 1  42.6 
 
 
347 aa  259  4e-68  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1588  extracellular solute-binding protein  43.11 
 
 
368 aa  237  3e-61  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG1945  iron ABC transporter, iron-binding protein  35.01 
 
 
345 aa  205  9e-52  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0209  ABC-type Fe3+ transport system periplasmic component-like protein  29.39 
 
 
322 aa  133  3.9999999999999996e-30  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0215  hypothetical protein  29.39 
 
 
322 aa  133  3.9999999999999996e-30  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4911  extracellular solute-binding protein  32.71 
 
 
333 aa  130  3e-29  Paracoccus denitrificans PD1222  Bacteria  normal  0.224202  normal  0.316622 
 
 
-
 
NC_002976  SERP2404  iron compound ABC transporter, iron compound-binding protein, putative  28.71 
 
 
324 aa  125  1e-27  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_3891  extracellular solute-binding protein  26.23 
 
 
327 aa  113  5e-24  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009635  Maeo_0333  extracellular solute-binding protein  28.03 
 
 
344 aa  109  7.000000000000001e-23  Methanococcus aeolicus Nankai-3  Archaea  normal  0.853179  n/a   
 
 
-
 
NC_009637  MmarC7_1107  extracellular solute-binding protein  28 
 
 
343 aa  108  2e-22  Methanococcus maripaludis C7  Archaea  normal  0.695758  normal 
 
 
-
 
NC_009135  MmarC5_1570  extracellular solute-binding protein  27.14 
 
 
350 aa  103  4e-21  Methanococcus maripaludis C5  Archaea  normal  0.840173  n/a   
 
 
-
 
NC_003909  BCE_1812  ABC transporter, substrate-binding protein, putative  23.74 
 
 
341 aa  100  4e-20  Bacillus cereus ATCC 10987  Bacteria  normal  0.98446  n/a   
 
 
-
 
NC_011658  BCAH187_A1866  putative ABC transporter, substrate-binding protein  23.74 
 
 
341 aa  100  4e-20  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1753  putative ABC transporter, substrate-binding protein  23.44 
 
 
341 aa  97.8  2e-19  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_2479  ABC transporter, periplasmic substrate-binding protein  23.3 
 
 
347 aa  97.8  2e-19  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3590  putative ABC transporter, substrate-binding protein  23.15 
 
 
341 aa  95.5  1e-18  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_1611  extracellular solute-binding protein  22.85 
 
 
341 aa  94.7  2e-18  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.257155  n/a   
 
 
-
 
NC_006274  BCZK1563  ABC transporter, substrate-binding protein  23.15 
 
 
341 aa  94.4  3e-18  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_0283  extracellular solute-binding protein family 1  26.52 
 
 
342 aa  92.8  8e-18  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_002967  TDE0386  ABC transporter, periplasmic substrate-binding protein  26.84 
 
 
338 aa  91.7  2e-17  Treponema denticola ATCC 35405  Bacteria  decreased coverage  0.00000551212  n/a   
 
 
-
 
NC_013171  Apre_0051  extracellular solute-binding protein family 1  28.74 
 
 
378 aa  91.7  2e-17  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.115612  n/a   
 
 
-
 
NC_010002  Daci_1282  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  28.08 
 
 
347 aa  91.3  2e-17  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3495  extracellular solute-binding protein  26.2 
 
 
375 aa  90.9  3e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.0500866  normal  0.246878 
 
 
-
 
NC_010581  Bind_2521  extracellular solute-binding protein  24.92 
 
 
340 aa  90.5  4e-17  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.552854 
 
 
-
 
NC_009436  Ent638_2070  extracellular solute-binding protein  25.89 
 
 
322 aa  89.7  7e-17  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0544  extracellular solute-binding protein  24.76 
 
 
322 aa  88.6  1e-16  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5367  extracellular solute-binding protein  24.84 
 
 
341 aa  87.4  3e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_4317  extracellular solute-binding protein  26.59 
 
 
343 aa  87  4e-16  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.362014 
 
 
-
 
NC_009620  Smed_4877  extracellular solute-binding protein  25.47 
 
 
340 aa  87  4e-16  Sinorhizobium medicae WSM419  Bacteria  normal  0.713524  normal  0.38801 
 
 
-
 
NC_011369  Rleg2_1762  extracellular solute-binding protein family 1  27.94 
 
 
340 aa  86.3  7e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.66245  normal  0.133818 
 
 
-
 
NC_004311  BRA0720  ABC transporter, periplasmic substrate-binding protein  28.69 
 
 
341 aa  84.7  0.000000000000002  Brucella suis 1330  Bacteria  normal  0.631762  n/a   
 
 
-
 
NC_009504  BOV_A0676  ABC transporter, periplasmic substrate-binding protein  28.69 
 
 
341 aa  84.7  0.000000000000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2485  extracellular solute-binding protein family 1  26.67 
 
 
343 aa  84.7  0.000000000000002  Dickeya dadantii Ech703  Bacteria  normal  0.390798  n/a   
 
 
-
 
NC_010322  PputGB1_5188  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  24.84 
 
 
341 aa  85.1  0.000000000000002  Pseudomonas putida GB-1  Bacteria  normal  0.491174  normal 
 
 
-
 
NC_007802  Jann_1363  extracellular solute-binding protein  25.87 
 
 
340 aa  84.7  0.000000000000002  Jannaschia sp. CCS1  Bacteria  normal  0.634696  normal 
 
 
-
 
NC_008346  Swol_2476  ABC-type iron(III)-binding periplasmic protein precursor  26.69 
 
 
364 aa  84.7  0.000000000000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000339151  n/a   
 
 
-
 
NC_011369  Rleg2_1761  extracellular solute-binding protein family 1  29.84 
 
 
341 aa  84.3  0.000000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.893641  normal  0.0475771 
 
 
-
 
NC_005957  BT9727_1572  ABC transporter, substrate-binding protein  23.15 
 
 
341 aa  84  0.000000000000004  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1366  extracellular solute-binding protein family 1  26.89 
 
 
344 aa  83.6  0.000000000000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.755106  n/a   
 
 
-
 
NC_005945  BAS1611  ABC transporter substrate-binding protein  23.15 
 
 
341 aa  83.2  0.000000000000007  Bacillus anthracis str. Sterne  Bacteria  normal  0.791321  n/a   
 
 
-
 
NC_007530  GBAA_1735  ABC transporter substrate-binding protein  23.15 
 
 
341 aa  83.2  0.000000000000007  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.313912  n/a   
 
 
-
 
NC_009512  Pput_5008  extracellular solute-binding protein  24.2 
 
 
341 aa  82.4  0.00000000000001  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5135  ABC transporter, periplasmic binding protein  24.2 
 
 
341 aa  81.6  0.00000000000002  Pseudomonas putida KT2440  Bacteria  normal  0.659918  normal 
 
 
-
 
NC_007951  Bxe_A1468  ABC polyamine transporter, periplasmic ligand binding protein  25.65 
 
 
349 aa  81.6  0.00000000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.119305 
 
 
-
 
NC_012852  Rleg_6061  extracellular solute-binding protein family 1  27.34 
 
 
342 aa  81.3  0.00000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1221  extracellular solute-binding protein family 1  25.9 
 
 
326 aa  81.6  0.00000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.141693  n/a   
 
 
-
 
NC_011894  Mnod_5871  extracellular solute-binding protein family 1  25.48 
 
 
342 aa  80.9  0.00000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0432658  n/a   
 
 
-
 
NC_011773  BCAH820_1786  putative ABC transporter, substrate-binding protein  22.85 
 
 
341 aa  80.9  0.00000000000003  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011353  ECH74115_0435  extracellular solute-binding protein, family 1  24.91 
 
 
343 aa  80.1  0.00000000000005  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1772  extracellular solute-binding protein family 1  26.14 
 
 
344 aa  79.7  0.00000000000007  Pectobacterium wasabiae WPP163  Bacteria  normal  0.320595  n/a   
 
 
-
 
NC_010681  Bphyt_2648  extracellular solute-binding protein family 1  25.28 
 
 
362 aa  79  0.0000000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.370022 
 
 
-
 
NC_010501  PputW619_0330  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  24.21 
 
 
341 aa  79  0.0000000000001  Pseudomonas putida W619  Bacteria  normal  normal  0.631264 
 
 
-
 
NC_008309  HS_0643  Fe3+ ABC transporter, iron-binding protein  25.38 
 
 
346 aa  79  0.0000000000001  Haemophilus somnus 129PT  Bacteria  hitchhiker  0.000121089  n/a   
 
 
-
 
NC_012917  PC1_1545  extracellular solute-binding protein family 1  24.58 
 
 
339 aa  78.2  0.0000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.061269  n/a   
 
 
-
 
NC_009620  Smed_3752  extracellular solute-binding protein  27.16 
 
 
342 aa  78.2  0.0000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.236177  normal 
 
 
-
 
NC_009338  Mflv_3363  extracellular solute-binding protein  26.37 
 
 
342 aa  77.8  0.0000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.950181 
 
 
-
 
NC_008261  CPF_0223  putative iron compound ABC transporter, iron compound-binding protein  26.57 
 
 
339 aa  78.2  0.0000000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0223  hypothetical protein  27 
 
 
339 aa  78.2  0.0000000000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4473  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  25.26 
 
 
341 aa  77.4  0.0000000000003  Ralstonia pickettii 12J  Bacteria  normal  normal  0.144148 
 
 
-
 
NC_012857  Rpic12D_4607  2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component  25.26 
 
 
341 aa  77.4  0.0000000000003  Ralstonia pickettii 12D  Bacteria  normal  0.980284  normal 
 
 
-
 
NC_009436  Ent638_0833  extracellular solute-binding protein  23.48 
 
 
343 aa  77.4  0.0000000000004  Enterobacter sp. 638  Bacteria  normal  normal  0.752683 
 
 
-
 
NC_010515  Bcenmc03_4968  2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein  23.12 
 
 
363 aa  77  0.0000000000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.537601  normal  0.0916324 
 
 
-
 
NC_008061  Bcen_3067  ABC transporter periplasmic-binding protein  23.12 
 
 
363 aa  77  0.0000000000004  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.127261  n/a   
 
 
-
 
NC_008543  Bcen2424_5300  ABC transporter periplasmic-binding protein  23.12 
 
 
363 aa  77  0.0000000000004  Burkholderia cenocepacia HI2424  Bacteria  normal  0.218142  normal  0.0163118 
 
 
-
 
NC_013170  Ccur_04090  ABC-type Fe3+ transport system, periplasmic component  25.1 
 
 
367 aa  77  0.0000000000005  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.510256 
 
 
-
 
NC_012852  Rleg_6060  extracellular solute-binding protein family 1  25.56 
 
 
340 aa  76.6  0.0000000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3115  extracellular solute-binding protein  27.8 
 
 
342 aa  76.6  0.0000000000006  Serratia proteamaculans 568  Bacteria  normal  0.0701659  normal 
 
 
-
 
NC_013946  Mrub_1201  extracellular solute-binding protein family 1  21.7 
 
 
320 aa  76.3  0.0000000000008  Meiothermus ruber DSM 1279  Bacteria  normal  0.941139  normal  0.523727 
 
 
-
 
NC_013530  Xcel_2993  extracellular solute-binding protein family 1  22.51 
 
 
350 aa  75.9  0.000000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4789  2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein  26.09 
 
 
362 aa  75.5  0.000000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.333603  hitchhiker  0.0000239278 
 
 
-
 
NC_013421  Pecwa_2917  extracellular solute-binding protein family 1  24.17 
 
 
339 aa  75.5  0.000000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1948  extracellular solute-binding protein  24.52 
 
 
326 aa  75.1  0.000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.113804  normal  0.383853 
 
 
-
 
NC_007952  Bxe_B1875  ABC transporter, periplasmic ligand binding protein  24.91 
 
 
363 aa  74.7  0.000000000002  Burkholderia xenovorans LB400  Bacteria  normal  0.217985  normal  0.203995 
 
 
-
 
NC_009636  Smed_3281  extracellular solute-binding protein  23.55 
 
 
343 aa  74.7  0.000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2899  extracellular solute-binding protein  24.52 
 
 
345 aa  74.7  0.000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  decreased coverage  0.00994055 
 
 
-
 
NC_014212  Mesil_1991  extracellular solute-binding protein family 1  25.07 
 
 
342 aa  73.9  0.000000000003  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.000248153  normal 
 
 
-
 
NC_007348  Reut_B5525  extracellular solute-binding protein  23.64 
 
 
340 aa  74.3  0.000000000003  Ralstonia eutropha JMP134  Bacteria  normal  0.655164  n/a   
 
 
-
 
NC_009972  Haur_1722  extracellular solute-binding protein  28.43 
 
 
379 aa  74.3  0.000000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000849376  n/a   
 
 
-
 
NC_008309  HS_0641  Fe3+ ABC transporter, iron-binding protein  24.25 
 
 
343 aa  74.3  0.000000000003  Haemophilus somnus 129PT  Bacteria  normal  0.147653  n/a   
 
 
-
 
NC_010622  Bphy_1501  extracellular solute-binding protein  25.51 
 
 
348 aa  73.6  0.000000000004  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012039  Cla_1526  ABC transporter, periplasmic binding protein  25.16 
 
 
334 aa  73.6  0.000000000005  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1215  ABC transporter, periplasmic substrate-binding protein  25.37 
 
 
353 aa  73.2  0.000000000006  Burkholderia mallei SAVP1  Bacteria  normal  0.0399502  n/a   
 
 
-
 
NC_006348  BMA3071  ABC transporter, periplasmic substrate-binding protein  25.37 
 
 
353 aa  73.2  0.000000000006  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0652  ABC transporter, periplasmic substrate-binding protein  25.37 
 
 
353 aa  73.2  0.000000000006  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1412  ABC transporter, periplasmic substrate-binding protein  25.37 
 
 
353 aa  73.2  0.000000000006  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0501  ABC transporter, periplasmic substrate-binding protein  25.37 
 
 
353 aa  73.2  0.000000000006  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5874  extracellular solute-binding protein  24.15 
 
 
341 aa  73.2  0.000000000007  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1419  ABC transporter, periplasmic substrate-binding protein  25.37 
 
 
353 aa  73.2  0.000000000007  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1586  extracellular solute-binding protein family 1  24.3 
 
 
333 aa  72.8  0.000000000009  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013235  Namu_1664  extracellular solute-binding protein family 1  25.59 
 
 
366 aa  72  0.00000000001  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.0000133453  normal  0.0424658 
 
 
-
 
NC_007511  Bcep18194_B0348  thiamine ABC transporter periplasmic binding protein  23.22 
 
 
362 aa  72.4  0.00000000001  Burkholderia sp. 383  Bacteria  normal  0.0499853  normal  0.792791 
 
 
-
 
NC_007643  Rru_A3199  extracellular solute-binding protein  23.81 
 
 
338 aa  72.4  0.00000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.680045  n/a   
 
 
-
 
NC_003295  RSc1791  solute-binding periplasmic (PBP) ABC transporter protein  25.73 
 
 
343 aa  71.6  0.00000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.450613  normal  0.0698003 
 
 
-
 
NC_007005  Psyr_4695  extracellular solute-binding protein  24.05 
 
 
333 aa  72  0.00000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1459  extracellular solute-binding protein family 1  25.1 
 
 
343 aa  71.2  0.00000000002  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0283759 
 
 
-
 
NC_014210  Ndas_3813  extracellular solute-binding protein family 1  26.12 
 
 
350 aa  72  0.00000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.941713  hitchhiker  0.00422068 
 
 
-
 
NC_010552  BamMC406_5189  2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein  22.5 
 
 
362 aa  71.6  0.00000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.746305 
 
 
-
 
NC_008391  Bamb_4661  ABC transporter periplasmic-binding protein  22.09 
 
 
362 aa  71.2  0.00000000003  Burkholderia ambifaria AMMD  Bacteria  normal  0.762259  normal  0.137959 
 
 
-
 
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