More than 300 homologs were found in PanDaTox collection
for query gene Cphy_1076 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_1076  binding-protein-dependent transport systems inner membrane component  100 
 
 
287 aa  574  1.0000000000000001e-163  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1508  MalG-type ABC sugar transport system permease component  54.12 
 
 
280 aa  311  4.999999999999999e-84  Bifidobacterium longum DJO10A  Bacteria  normal  0.183163  n/a   
 
 
-
 
NC_013203  Apar_0606  binding-protein-dependent transport systems inner membrane component  54.18 
 
 
279 aa  296  2e-79  Atopobium parvulum DSM 20469  Bacteria  normal  0.980821  normal  0.149649 
 
 
-
 
NC_013721  HMPREF0424_1302  ABC transporter, permease protein  52.94 
 
 
277 aa  290  3e-77  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_010320  Teth514_1117  binding-protein-dependent transport systems inner membrane component  44.7 
 
 
275 aa  210  2e-53  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_09510  binding-protein-dependent transport systems inner membrane component  34.13 
 
 
290 aa  175  6e-43  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000000548355  n/a   
 
 
-
 
NC_011661  Dtur_0550  binding-protein-dependent transport systems inner membrane component  41.39 
 
 
275 aa  168  1e-40  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.000150437  n/a   
 
 
-
 
NC_008528  OEOE_0023  ABC-type maltose transport system, permease component  37.04 
 
 
271 aa  159  4e-38  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1115  sugar ABC transporter, permease protein  34.94 
 
 
285 aa  159  5e-38  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0469179  n/a   
 
 
-
 
NC_008528  OEOE_0812  ABC-type maltose transport system, permease component  39.05 
 
 
215 aa  157  2e-37  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_13120  binding-protein-dependent transport systems inner membrane component  32.36 
 
 
281 aa  154  1e-36  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8234  maltose transport protein  33.82 
 
 
271 aa  152  8e-36  Streptosporangium roseum DSM 43021  Bacteria  normal  0.367769  normal 
 
 
-
 
NC_012669  Bcav_3677  binding-protein-dependent transport systems inner membrane component  34.22 
 
 
304 aa  148  8e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.842824 
 
 
-
 
NC_013411  GYMC61_2714  binding-protein-dependent transport systems inner membrane component  32.53 
 
 
288 aa  148  1.0000000000000001e-34  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013171  Apre_0240  binding-protein-dependent transport systems inner membrane component  34.6 
 
 
277 aa  140  3e-32  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1487  MalG-type ABC sugar transport system permease component  31.88 
 
 
288 aa  136  5e-31  Bifidobacterium longum DJO10A  Bacteria  normal  0.210522  n/a   
 
 
-
 
NC_010001  Cphy_3860  binding-protein-dependent transport systems inner membrane component  33.81 
 
 
291 aa  135  6.0000000000000005e-31  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_31520  carbohydrate ABC transporter membrane protein  30.22 
 
 
303 aa  134  1.9999999999999998e-30  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.424225  normal  0.830973 
 
 
-
 
NC_009972  Haur_4035  binding-protein-dependent transport systems inner membrane component  31.42 
 
 
298 aa  132  5e-30  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3602  binding-protein-dependent transport systems inner membrane component  28.62 
 
 
295 aa  129  4.0000000000000003e-29  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009654  Mmwyl1_1649  binding-protein-dependent transport systems inner membrane component  30.85 
 
 
287 aa  129  5.0000000000000004e-29  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.981923 
 
 
-
 
NC_008010  Dgeo_2694  binding-protein-dependent transport systems inner membrane component  32.3 
 
 
279 aa  126  4.0000000000000003e-28  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_3474  binding-protein-dependent transport systems inner membrane component  29.53 
 
 
280 aa  126  5e-28  Actinosynnema mirum DSM 43827  Bacteria  normal  0.183676  n/a   
 
 
-
 
NC_008148  Rxyl_0623  binding-protein-dependent transport systems inner membrane component  27.94 
 
 
285 aa  126  5e-28  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.587185  n/a   
 
 
-
 
NC_013947  Snas_2857  binding-protein-dependent transport systems inner membrane component  31.05 
 
 
298 aa  125  1e-27  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.705306  normal 
 
 
-
 
NC_012848  Rleg_4749  binding-protein-dependent transport systems inner membrane component  31.84 
 
 
294 aa  124  1e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.377096 
 
 
-
 
NC_010816  BLD_1058  MalG-type ABC sugar transport system permease component  31.75 
 
 
277 aa  123  3e-27  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3249  binding-protein-dependent transporter inner membrane component  30.94 
 
 
284 aa  122  8e-27  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1000  binding-protein-dependent transport systems inner membrane component  29.56 
 
 
279 aa  120  1.9999999999999998e-26  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_4664  binding-protein-dependent transport systems inner membrane component  30.08 
 
 
294 aa  121  1.9999999999999998e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.829969 
 
 
-
 
NC_007509  Bcep18194_C6935  ABC sugar transporter, inner membrane subunit  29.8 
 
 
300 aa  119  3.9999999999999996e-26  Burkholderia sp. 383  Bacteria  normal  0.111402  normal  0.938789 
 
 
-
 
NC_013172  Bfae_24640  carbohydrate ABC transporter membrane protein  28.09 
 
 
303 aa  120  3.9999999999999996e-26  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011881  Achl_4614  binding-protein-dependent transport systems inner membrane component  29.02 
 
 
296 aa  119  4.9999999999999996e-26  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011898  Ccel_1027  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
279 aa  119  7e-26  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.006727  n/a   
 
 
-
 
NC_013595  Sros_7705  sugar ABC transporter (permease)  30.54 
 
 
301 aa  119  7.999999999999999e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.675914 
 
 
-
 
NC_013595  Sros_2049  sugar ABC transporter (permease)  31.16 
 
 
303 aa  118  9e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.907779  normal 
 
 
-
 
NC_008686  Pden_2470  binding-protein-dependent transport systems inner membrane component  28.77 
 
 
279 aa  118  9.999999999999999e-26  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.217565 
 
 
-
 
NC_010003  Pmob_0475  binding-protein-dependent transport systems inner membrane component  28.87 
 
 
276 aa  117  1.9999999999999998e-25  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1245  binding-protein-dependent transport systems inner membrane component  29.12 
 
 
287 aa  117  1.9999999999999998e-25  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.544041  n/a   
 
 
-
 
NC_013595  Sros_0294  ABC sugar transporter, inner membrane subunit  27.11 
 
 
278 aa  117  1.9999999999999998e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1939  binding-protein-dependent transport systems inner membrane component  29.49 
 
 
314 aa  117  1.9999999999999998e-25  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0503026  normal  0.979613 
 
 
-
 
NC_008541  Arth_3322  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
309 aa  117  1.9999999999999998e-25  Arthrobacter sp. FB24  Bacteria  normal  0.0903437  n/a   
 
 
-
 
NC_012791  Vapar_3350  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
274 aa  117  1.9999999999999998e-25  Variovorax paradoxus S110  Bacteria  normal  0.610127  n/a   
 
 
-
 
NC_010320  Teth514_1093  binding-protein-dependent transport systems inner membrane component  32.31 
 
 
270 aa  117  1.9999999999999998e-25  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_1354  binding-protein-dependent transport systems inner membrane component  29.69 
 
 
279 aa  116  3.9999999999999997e-25  Jannaschia sp. CCS1  Bacteria  normal  0.0981879  normal 
 
 
-
 
NC_011898  Ccel_1135  binding-protein-dependent transport systems inner membrane component  33.7 
 
 
276 aa  116  3.9999999999999997e-25  Clostridium cellulolyticum H10  Bacteria  normal  0.776984  n/a   
 
 
-
 
NC_009654  Mmwyl1_2764  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
275 aa  116  3.9999999999999997e-25  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_23830  ABC-type sugar transport system, permease component  27.56 
 
 
303 aa  116  5e-25  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3039  binding-protein-dependent transport systems inner membrane component  28.51 
 
 
299 aa  116  5e-25  Arthrobacter sp. FB24  Bacteria  normal  0.0966024  n/a   
 
 
-
 
NC_009636  Smed_2948  binding-protein-dependent transport systems inner membrane component  28.98 
 
 
282 aa  115  6e-25  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4549  binding-protein-dependent transport systems inner membrane component  30.6 
 
 
280 aa  115  6.9999999999999995e-25  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2708  binding-protein-dependent transport systems inner membrane component  29.69 
 
 
279 aa  115  7.999999999999999e-25  Chelativorans sp. BNC1  Bacteria  normal  0.169914  n/a   
 
 
-
 
NC_011071  Smal_2681  Monosaccharide-transporting ATPase  29.41 
 
 
278 aa  115  1.0000000000000001e-24  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.515759  normal 
 
 
-
 
NC_011899  Hore_13180  binding-protein-dependent transport systems inner membrane component  28.98 
 
 
284 aa  114  2.0000000000000002e-24  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3122  binding-protein-dependent transport systems inner membrane component  27.87 
 
 
305 aa  114  2.0000000000000002e-24  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.290341 
 
 
-
 
NC_013595  Sros_7693  putative transmembrane permease component of ABC transporter  27.08 
 
 
286 aa  114  2.0000000000000002e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.673988 
 
 
-
 
NC_011899  Hore_14530  binding-protein-dependent transport systems inner membrane component  31.41 
 
 
284 aa  114  2.0000000000000002e-24  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000000102365  n/a   
 
 
-
 
NC_013530  Xcel_2912  binding-protein-dependent transport systems inner membrane component  29.34 
 
 
291 aa  113  3e-24  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3155  binding-protein-dependent transport systems inner membrane component  28.41 
 
 
279 aa  114  3e-24  Ruegeria sp. TM1040  Bacteria  normal  0.358123  normal 
 
 
-
 
NC_012034  Athe_0616  binding-protein-dependent transport systems inner membrane component  33.86 
 
 
275 aa  113  3e-24  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_0471  ABC-type sugar transport system permease component-like  31.66 
 
 
276 aa  113  5e-24  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20500  Monosaccharide-transporting ATPase  29.31 
 
 
291 aa  112  6e-24  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00337016  n/a   
 
 
-
 
NC_013131  Caci_3589  binding-protein-dependent transport systems inner membrane component  31.37 
 
 
298 aa  112  6e-24  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.370604  normal 
 
 
-
 
NC_013521  Sked_05440  carbohydrate ABC transporter membrane protein  25.26 
 
 
307 aa  112  7.000000000000001e-24  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.050978  normal 
 
 
-
 
NC_014212  Mesil_2655  binding-protein-dependent transport systems inner membrane component  30.77 
 
 
276 aa  112  9e-24  Meiothermus silvanus DSM 9946  Bacteria  hitchhiker  0.00701283  normal 
 
 
-
 
NC_009668  Oant_3548  binding-protein-dependent transport systems inner membrane component  28.11 
 
 
279 aa  112  9e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.175971  n/a   
 
 
-
 
NC_011369  Rleg2_1687  binding-protein-dependent transport systems inner membrane component  27.46 
 
 
282 aa  111  1.0000000000000001e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.437147  normal 
 
 
-
 
NC_009718  Fnod_0628  binding-protein-dependent transport systems inner membrane component  29.32 
 
 
280 aa  111  1.0000000000000001e-23  Fervidobacterium nodosum Rt17-B1  Bacteria  hitchhiker  0.00114056  n/a   
 
 
-
 
NC_009636  Smed_3402  binding-protein-dependent transport systems inner membrane component  29.01 
 
 
279 aa  112  1.0000000000000001e-23  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00882  L-arabinose transport system permease protein AraQ  27.73 
 
 
278 aa  111  1.0000000000000001e-23  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0407955  n/a   
 
 
-
 
NC_012669  Bcav_1507  binding-protein-dependent transport systems inner membrane component  27.21 
 
 
303 aa  110  2.0000000000000002e-23  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.659062  normal 
 
 
-
 
NC_004311  BRA0519  sugar ABC transporter, permease protein  27.92 
 
 
279 aa  110  2.0000000000000002e-23  Brucella suis 1330  Bacteria  normal  0.633758  n/a   
 
 
-
 
NC_012850  Rleg_1868  binding-protein-dependent transport systems inner membrane component  27.82 
 
 
282 aa  111  2.0000000000000002e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.766168 
 
 
-
 
NC_010551  BamMC406_0842  binding-protein-dependent transport systems inner membrane component  28.21 
 
 
285 aa  110  2.0000000000000002e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  0.90323  normal 
 
 
-
 
NC_009504  BOV_A0452  sugar ABC transporter, permease protein  27.3 
 
 
279 aa  110  3e-23  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_11560  carbohydrate ABC transporter membrane protein  29.57 
 
 
301 aa  110  3e-23  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.626059  hitchhiker  0.00742077 
 
 
-
 
NC_013739  Cwoe_4881  binding-protein-dependent transport systems inner membrane component  30.48 
 
 
295 aa  110  4.0000000000000004e-23  Conexibacter woesei DSM 14684  Bacteria  normal  0.48115  normal 
 
 
-
 
NC_010001  Cphy_3407  binding-protein-dependent transport systems inner membrane component  32.32 
 
 
281 aa  110  4.0000000000000004e-23  Clostridium phytofermentans ISDg  Bacteria  normal  0.0224694  n/a   
 
 
-
 
NC_010003  Pmob_0307  binding-protein-dependent transport systems inner membrane component  29.71 
 
 
274 aa  109  4.0000000000000004e-23  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2701  binding-protein-dependent transport systems inner membrane component  30.34 
 
 
275 aa  110  4.0000000000000004e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0563997  n/a   
 
 
-
 
NC_009654  Mmwyl1_0884  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
297 aa  110  4.0000000000000004e-23  Marinomonas sp. MWYL1  Bacteria  normal  0.956099  normal  0.495263 
 
 
-
 
NC_008786  Veis_0946  binding-protein-dependent transport systems inner membrane component  29.54 
 
 
281 aa  109  5e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0830  binding-protein-dependent transport systems inner membrane component  28.27 
 
 
285 aa  108  8.000000000000001e-23  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2414  binding-protein-dependent transport systems inner membrane component  26.12 
 
 
292 aa  108  9.000000000000001e-23  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.161941  n/a   
 
 
-
 
NC_007963  Csal_2612  binding-protein-dependent transport systems inner membrane component  32.81 
 
 
276 aa  108  9.000000000000001e-23  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0088  binding-protein-dependent transport systems inner membrane component  27.8 
 
 
271 aa  108  1e-22  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1693  binding-protein-dependent transport systems inner membrane component  25.53 
 
 
282 aa  108  1e-22  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.262345 
 
 
-
 
NC_013093  Amir_0401  binding-protein-dependent transport systems inner membrane component  27.44 
 
 
273 aa  108  1e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3649  binding-protein-dependent transport systems inner membrane component  24.2 
 
 
281 aa  108  1e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.0384109 
 
 
-
 
NC_004311  BRA0691  sugar ABC transporter, permease protein, putative  25.71 
 
 
293 aa  107  2e-22  Brucella suis 1330  Bacteria  normal  0.166963  n/a   
 
 
-
 
NC_010508  Bcenmc03_0931  binding-protein-dependent transport systems inner membrane component  27.56 
 
 
285 aa  107  2e-22  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0528  binding-protein-dependent transport systems inner membrane component  28.67 
 
 
281 aa  107  2e-22  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00417189  n/a   
 
 
-
 
NC_013739  Cwoe_0239  binding-protein-dependent transport systems inner membrane component  26.52 
 
 
277 aa  107  2e-22  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.537266 
 
 
-
 
NC_012850  Rleg_2904  binding-protein-dependent transport systems inner membrane component  28.11 
 
 
279 aa  107  2e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.239478  normal 
 
 
-
 
NC_013530  Xcel_0899  binding-protein-dependent transport systems inner membrane component  26.5 
 
 
308 aa  107  2e-22  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.408611  n/a   
 
 
-
 
NC_014210  Ndas_3334  binding-protein-dependent transport systems inner membrane component  25.35 
 
 
299 aa  107  2e-22  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0646  putative sugar ABC transporter, permease protein  25.71 
 
 
293 aa  107  2e-22  Brucella ovis ATCC 25840  Bacteria  normal  0.313073  n/a   
 
 
-
 
NC_010001  Cphy_3031  binding-protein-dependent transport systems inner membrane component  28.33 
 
 
277 aa  107  2e-22  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_0491  binding-protein-dependent transport systems inner membrane component  27.21 
 
 
285 aa  106  3e-22  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.303102  n/a   
 
 
-
 
NC_008542  Bcen2424_0970  binding-protein-dependent transport systems inner membrane component  27.21 
 
 
285 aa  106  3e-22  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
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