More than 300 homologs were found in PanDaTox collection
for query gene Cphy_0928 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_0928  AraC family transcriptional regulator  100 
 
 
766 aa  1556    Clostridium phytofermentans ISDg  Bacteria  normal  0.197774  n/a   
 
 
-
 
NC_012034  Athe_2329  transcriptional regulator, AraC family  22.14 
 
 
773 aa  84  0.00000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3861  two component AraC family transcriptional regulator  39.42 
 
 
259 aa  81.3  0.00000000000006  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3497  AraC family transcriptional regulator  33.55 
 
 
198 aa  79  0.0000000000003  Bacillus cereus E33L  Bacteria  normal  0.27794  n/a   
 
 
-
 
NC_011773  BCAH820_3751  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  33.12 
 
 
198 aa  79  0.0000000000003  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000128468 
 
 
-
 
NC_005945  BAS3585  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  33.12 
 
 
198 aa  78.2  0.0000000000006  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3485  AraC family transcriptional regulator  33.12 
 
 
198 aa  78.2  0.0000000000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.781082  n/a   
 
 
-
 
NC_007530  GBAA_3869  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  33.12 
 
 
198 aa  78.2  0.0000000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A3788  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  33.12 
 
 
198 aa  77.4  0.0000000000009  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3697  two component AraC family transcriptional regulator  38.78 
 
 
517 aa  76.3  0.000000000002  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000611836  n/a   
 
 
-
 
NC_010001  Cphy_3256  AraC family transcriptional regulator  36.19 
 
 
292 aa  76.3  0.000000000002  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A3840  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  30.97 
 
 
198 aa  76.3  0.000000000002  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0937  transcriptional regulator, AraC family  40 
 
 
291 aa  75.9  0.000000000003  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.440102  n/a   
 
 
-
 
NC_011772  BCG9842_B1459  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  30.97 
 
 
198 aa  75.9  0.000000000003  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0000164097 
 
 
-
 
NC_008261  CPF_2344  AraC family DNA-binding response regulator  24.16 
 
 
507 aa  75.9  0.000000000003  Clostridium perfringens ATCC 13124  Bacteria  normal  0.627636  n/a   
 
 
-
 
NC_003909  BCE_3772  Ada regulatory protein/6-O-methylguanine-DNA methyltransferase  32.26 
 
 
198 aa  75.5  0.000000000004  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3129  AraC family transcriptional regulator  28.91 
 
 
299 aa  75.1  0.000000000004  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0276  helix-turn-helix domain-containing protein  30.83 
 
 
291 aa  75.1  0.000000000005  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0102  two component transcriptional regulator, AraC family  36.36 
 
 
519 aa  74.7  0.000000000006  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1179  two component AraC family transcriptional regulator  34.51 
 
 
359 aa  74.7  0.000000000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_0410  two component transcriptional regulator, AraC family  35.92 
 
 
233 aa  74.3  0.000000000008  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010501  PputW619_2736  AraC family transcriptional regulator  33.98 
 
 
154 aa  73.9  0.000000000009  Pseudomonas putida W619  Bacteria  normal  normal  0.66637 
 
 
-
 
NC_011725  BCB4264_A3053  transcriptional regulator, AraC family  36.36 
 
 
296 aa  72.4  0.00000000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_3088  AraC family transcriptional regulator  36.36 
 
 
296 aa  72.4  0.00000000003  Bacillus cereus ATCC 10987  Bacteria  normal  0.530109  n/a   
 
 
-
 
NC_011898  Ccel_2113  two component transcriptional regulator, AraC family  34.34 
 
 
538 aa  72.4  0.00000000003  Clostridium cellulolyticum H10  Bacteria  normal  0.141697  n/a   
 
 
-
 
NC_011898  Ccel_1982  two component transcriptional regulator, AraC family  30.77 
 
 
544 aa  72.4  0.00000000003  Clostridium cellulolyticum H10  Bacteria  normal  0.184696  n/a   
 
 
-
 
NC_011898  Ccel_0944  two component transcriptional regulator, AraC family  36.36 
 
 
539 aa  72  0.00000000004  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2469  AraC family transcriptional regulator  29.93 
 
 
361 aa  72  0.00000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_3508  AraC family transcriptional regulator  30.32 
 
 
196 aa  72  0.00000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0210792  n/a   
 
 
-
 
NC_005957  BT9727_2816  AraC family transcriptional regulator  36.36 
 
 
296 aa  71.6  0.00000000005  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0224  response regulator receiver protein  33.33 
 
 
537 aa  71.6  0.00000000005  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2193  transcriptional regulator, AraC family  34.34 
 
 
296 aa  71.6  0.00000000005  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000412725 
 
 
-
 
NC_007912  Sde_2888  AraC family transcriptional regulator  39.09 
 
 
286 aa  71.6  0.00000000005  Saccharophagus degradans 2-40  Bacteria  normal  0.0357518  hitchhiker  0.0034345 
 
 
-
 
NC_013162  Coch_0540  transcriptional regulator, AraC family  35.35 
 
 
289 aa  71.6  0.00000000005  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.516999  n/a   
 
 
-
 
NC_010320  Teth514_1958  response regulator receiver protein  34 
 
 
530 aa  71.2  0.00000000006  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000471781  n/a   
 
 
-
 
NC_007952  Bxe_B0134  AraC family transcriptional regulator  32.69 
 
 
322 aa  71.2  0.00000000006  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1602  transcriptional regulator  37.5 
 
 
330 aa  71.2  0.00000000007  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2718  two component transcriptional regulator, AraC family  31.58 
 
 
259 aa  71.2  0.00000000007  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_0142  transcriptional regulator, AraC family  19.57 
 
 
760 aa  70.1  0.0000000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0600  two component transcriptional regulator, AraC family  35 
 
 
546 aa  70.5  0.0000000001  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010335  Caul_5108  AraC family transcriptional regulator  32.67 
 
 
316 aa  70.5  0.0000000001  Caulobacter sp. K31  Bacteria  normal  0.310256  normal 
 
 
-
 
NC_011773  BCAH820_3069  transcriptional regulator, AraC family  35.35 
 
 
296 aa  69.7  0.0000000002  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003910  CPS_0659  AraC family transcriptional regulator  36.56 
 
 
290 aa  70.1  0.0000000002  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK2776  AraC family transcriptional regulator  35.35 
 
 
296 aa  69.7  0.0000000002  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2238  AraC family transcriptional regulator  34.29 
 
 
297 aa  69.7  0.0000000002  Serratia proteamaculans 568  Bacteria  normal  hitchhiker  0.00000454466 
 
 
-
 
NC_013172  Bfae_29140  response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain  33.63 
 
 
279 aa  69.7  0.0000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_0574  AraC family transcriptional regulator  26.36 
 
 
311 aa  69.3  0.0000000002  Chelativorans sp. BNC1  Bacteria  normal  0.0798057  n/a   
 
 
-
 
NC_008262  CPR_2056  AraC family DNA-binding response regulator  22.15 
 
 
507 aa  69.7  0.0000000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A3086  transcriptional regulator, AraC family  35.35 
 
 
296 aa  69.3  0.0000000002  Bacillus cereus AH187  Bacteria  normal  0.164604  n/a   
 
 
-
 
NC_013411  GYMC61_3305  two component transcriptional regulator, AraC family  38.54 
 
 
513 aa  69.7  0.0000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_1650  AraC family transcriptional regulator  33.33 
 
 
316 aa  69.7  0.0000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1536  putative AraC family DNA-binding protein  33.33 
 
 
310 aa  69.3  0.0000000003  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3503  transcription activator, effector binding  33.66 
 
 
294 aa  68.9  0.0000000003  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00111619  n/a   
 
 
-
 
NC_010001  Cphy_0525  two component AraC family transcriptional regulator  35 
 
 
522 aa  68.9  0.0000000003  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0771  AraC family transcriptional regulator  34 
 
 
288 aa  69.3  0.0000000003  Opitutus terrae PB90-1  Bacteria  normal  normal  0.472166 
 
 
-
 
NC_010184  BcerKBAB4_2836  AraC family transcriptional regulator  34.34 
 
 
296 aa  68.6  0.0000000004  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.00254989  n/a   
 
 
-
 
NC_009654  Mmwyl1_1173  cupin 2 domain-containing protein  35.24 
 
 
316 aa  68.6  0.0000000004  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2373  two component transcriptional regulator, AraC family  38.78 
 
 
252 aa  68.6  0.0000000004  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3550  transcriptional regulator, AraC family  35.64 
 
 
313 aa  68.6  0.0000000005  Variovorax paradoxus S110  Bacteria  normal  0.682713  n/a   
 
 
-
 
NC_009513  Lreu_1750  AraC family transcriptional regulator  36.27 
 
 
359 aa  68.2  0.0000000005  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3662  AraC family transcriptional regulator  35.92 
 
 
324 aa  68.6  0.0000000005  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS2843  AraC family transcriptional regulator  34.34 
 
 
296 aa  68.2  0.0000000006  Bacillus anthracis str. Sterne  Bacteria  normal  0.538425  n/a   
 
 
-
 
NC_011899  Hore_19910  response regulator receiver protein  32.69 
 
 
386 aa  68.2  0.0000000006  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_3057  AraC family transcriptional regulator  34.34 
 
 
296 aa  68.2  0.0000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.118978  n/a   
 
 
-
 
NC_010571  Oter_4074  AraC family transcriptional regulator  33.64 
 
 
290 aa  67.8  0.0000000006  Opitutus terrae PB90-1  Bacteria  normal  normal  0.63505 
 
 
-
 
NC_011898  Ccel_1645  two component transcriptional regulator, AraC family  27.97 
 
 
526 aa  67.8  0.0000000007  Clostridium cellulolyticum H10  Bacteria  normal  0.168722  n/a   
 
 
-
 
NC_009511  Swit_0716  AraC family transcriptional regulator  33.65 
 
 
296 aa  67.8  0.0000000007  Sphingomonas wittichii RW1  Bacteria  normal  hitchhiker  0.00193737 
 
 
-
 
NC_009636  Smed_2797  transcription activator effector binding  38.61 
 
 
279 aa  67.8  0.0000000007  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.338998 
 
 
-
 
NC_010001  Cphy_3887  two component AraC family transcriptional regulator  28.85 
 
 
252 aa  67.8  0.0000000007  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0876  transcriptional regulator, AraC family  31.25 
 
 
405 aa  67.8  0.0000000007  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_4415  AraC family transcriptional regulator  35.64 
 
 
303 aa  66.6  0.000000001  Opitutus terrae PB90-1  Bacteria  hitchhiker  0.0031509  normal  0.543799 
 
 
-
 
NC_012034  Athe_0853  two component transcriptional regulator, AraC family  36.27 
 
 
509 aa  66.2  0.000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0919  two component AraC family transcriptional regulator  33.66 
 
 
356 aa  66.6  0.000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2113  two component AraC family transcriptional regulator  21.62 
 
 
548 aa  66.6  0.000000002  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_2057  AraC family transcriptional regulator  38.38 
 
 
293 aa  66.2  0.000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.227096  n/a   
 
 
-
 
NC_008261  CPF_0555  AraC family DNA-binding response regulator  31 
 
 
529 aa  66.6  0.000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0539  AraC family DNA-binding response regulator  31.31 
 
 
529 aa  66.2  0.000000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1824  two component AraC family transcriptional regulator  32.54 
 
 
362 aa  66.6  0.000000002  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000196685  n/a   
 
 
-
 
NC_011830  Dhaf_4320  transcriptional regulator, AraC family  25 
 
 
427 aa  66.2  0.000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3262  response regulator receiver protein  31.4 
 
 
257 aa  66.2  0.000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0937  transcriptional regulator, AraC family  26.21 
 
 
291 aa  65.9  0.000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.127184  normal 
 
 
-
 
NC_010338  Caul_1398  AraC family transcriptional regulator  32 
 
 
296 aa  65.5  0.000000003  Caulobacter sp. K31  Bacteria  normal  0.584508  normal 
 
 
-
 
NC_011769  DvMF_1576  transcriptional regulator, AraC family  25.66 
 
 
436 aa  65.9  0.000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013205  Aaci_2890  transcriptional regulator, AraC family  33 
 
 
300 aa  65.9  0.000000003  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.178075  n/a   
 
 
-
 
NC_011898  Ccel_1251  two component transcriptional regulator, AraC family  31.9 
 
 
566 aa  65.5  0.000000004  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1111  AraC family transcriptional regulator  33.33 
 
 
506 aa  65.5  0.000000004  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.0000128485  n/a   
 
 
-
 
NC_010001  Cphy_1583  two component AraC family transcriptional regulator  30 
 
 
533 aa  65.5  0.000000004  Clostridium phytofermentans ISDg  Bacteria  normal  0.160886  n/a   
 
 
-
 
NC_013512  Sdel_1641  transcription activator effector binding protein  35 
 
 
287 aa  65.1  0.000000005  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2058  transcriptional regulator, AraC family  35 
 
 
286 aa  65.1  0.000000005  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1474  transcriptional regulator, AraC family  34.69 
 
 
286 aa  64.7  0.000000006  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2415  AraC family transcriptional regulator  28.71 
 
 
345 aa  64.7  0.000000006  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2055  two component transcriptional regulator, AraC family  21.75 
 
 
519 aa  64.7  0.000000006  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3327  AraC family transcriptional regulator  31.71 
 
 
146 aa  64.7  0.000000007  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000116444  n/a   
 
 
-
 
NC_010001  Cphy_1722  two component AraC family transcriptional regulator  35 
 
 
508 aa  64.3  0.000000007  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1003  transcriptional regulator, AraC family  32.17 
 
 
289 aa  64.7  0.000000007  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5122  transcriptional regulator AraC family  26.79 
 
 
314 aa  64.7  0.000000007  Agrobacterium vitis S4  Bacteria  normal  0.962416  n/a   
 
 
-
 
NC_010001  Cphy_0771  two component AraC family transcriptional regulator  31.54 
 
 
355 aa  64.3  0.000000008  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000862622  n/a   
 
 
-
 
NC_011898  Ccel_1228  two component transcriptional regulator, AraC family  35.09 
 
 
532 aa  64.3  0.000000008  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_3164  two component AraC family transcriptional regulator  32.67 
 
 
544 aa  64.3  0.000000008  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0633186  n/a   
 
 
-
 
NC_007336  Reut_C6068  AraC family transcriptional regulator  32 
 
 
287 aa  63.9  0.000000009  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
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