More than 300 homologs were found in PanDaTox collection
for query gene Ccel_2935 on replicon NC_011898
Organism: Clostridium cellulolyticum H10



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011898  Ccel_2935  transcriptional regulator, PadR-like family  100 
 
 
116 aa  233  7e-61  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000047727  n/a   
 
 
-
 
NC_009012  Cthe_1895  PadR family transcriptional regulator  57.39 
 
 
115 aa  136  7.999999999999999e-32  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0961  transcriptional regulator, PadR-like family  61.26 
 
 
115 aa  132  9.999999999999999e-31  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2175  transcriptional regulator, PadR-like family  58.49 
 
 
114 aa  131  3e-30  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000935551  normal  0.0245277 
 
 
-
 
NC_011830  Dhaf_3375  transcriptional regulator, PadR-like family  50 
 
 
114 aa  122  1e-27  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000695283  n/a   
 
 
-
 
NC_010001  Cphy_3562  PadR-like family transcriptional regulator  53.21 
 
 
109 aa  115  1.9999999999999998e-25  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2018  PadR-like family transcriptional regulator  52.34 
 
 
111 aa  114  6e-25  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_0735  PadR-like family transcriptional regulator  42.31 
 
 
111 aa  106  1e-22  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5114  PadR family transcriptional regulator  40.74 
 
 
121 aa  97.8  4e-20  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS4845  PadR family transcriptional regulator  40.74 
 
 
188 aa  98.2  4e-20  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5082  transcriptional regulator, PadR family  40.19 
 
 
109 aa  95.9  1e-19  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_5211  PadR family transcriptional regulator  40.19 
 
 
109 aa  95.9  1e-19  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1117  transcriptional regulator, PadR-like family  40 
 
 
122 aa  94  7e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.742645 
 
 
-
 
NC_014210  Ndas_0742  transcriptional regulator, PadR-like family  36.84 
 
 
124 aa  90.9  5e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.238359  normal 
 
 
-
 
NC_008009  Acid345_4394  PadR family transcriptional regulator  37.61 
 
 
119 aa  90.9  6e-18  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1284  PadR family transcriptional regulator  36.19 
 
 
121 aa  89  2e-17  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.865226  normal 
 
 
-
 
NC_014158  Tpau_3127  transcriptional regulator, PadR-like family  36.28 
 
 
128 aa  87.8  4e-17  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.177743  n/a   
 
 
-
 
NC_013530  Xcel_1408  transcriptional regulator, PadR-like family  38.1 
 
 
118 aa  87.4  5e-17  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.364205  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0950  PadR-like family transcriptional regulator  37.74 
 
 
110 aa  87.4  6e-17  Bacillus weihenstephanensis KBAB4  Bacteria  unclonable  0.0000000224962  n/a   
 
 
-
 
NC_011725  BCB4264_A1068  transcriptional regulator, PadR family  43.01 
 
 
110 aa  87  7e-17  Bacillus cereus B4264  Bacteria  hitchhiker  0.00406829  n/a   
 
 
-
 
NC_008146  Mmcs_5217  PadR family transcriptional regulator  37.14 
 
 
118 aa  85.9  2e-16  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5305  PadR family transcriptional regulator  37.14 
 
 
118 aa  85.9  2e-16  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_5597  PadR family transcriptional regulator  37.14 
 
 
118 aa  85.9  2e-16  Mycobacterium sp. JLS  Bacteria  normal  0.459425  normal  0.499532 
 
 
-
 
NC_009921  Franean1_1641  PadR-like family transcriptional regulator  36.21 
 
 
130 aa  84  6e-16  Frankia sp. EAN1pec  Bacteria  normal  normal  0.103704 
 
 
-
 
NC_013131  Caci_8234  transcriptional regulator, PadR-like family  33.33 
 
 
123 aa  83.2  0.000000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3822  transcriptional regulator, PadR-like family  36.84 
 
 
114 aa  83.2  0.000000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0617  PadR family transcriptional regulator  34.29 
 
 
108 aa  83.2  0.000000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_4285  PadR family transcriptional regulator  37.25 
 
 
110 aa  82  0.000000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_002967  TDE1035  PadR family transcriptional regulator  35.29 
 
 
108 aa  80.5  0.000000000000006  Treponema denticola ATCC 35405  Bacteria  hitchhiker  0.00460025  n/a   
 
 
-
 
NC_007644  Moth_2348  PadR family transcriptional regulator  34.82 
 
 
119 aa  80.5  0.000000000000006  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.14892 
 
 
-
 
NC_008261  CPF_0699  PadR family transcriptional regulator  36.04 
 
 
110 aa  80.1  0.000000000000009  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000596024  n/a   
 
 
-
 
NC_013204  Elen_1313  transcriptional regulator, PadR-like family  38.32 
 
 
113 aa  79.3  0.00000000000001  Eggerthella lenta DSM 2243  Bacteria  normal  0.107904  normal  0.0202461 
 
 
-
 
NC_008009  Acid345_0755  PadR family transcriptional regulator  34.65 
 
 
125 aa  79.7  0.00000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.916558  normal 
 
 
-
 
NC_011832  Mpal_0870  transcriptional regulator, PadR-like family  41.58 
 
 
109 aa  80.1  0.00000000000001  Methanosphaerula palustris E1-9c  Archaea  normal  0.126206  normal 
 
 
-
 
NC_013926  Aboo_0595  transcriptional regulator, PadR-like family  37.74 
 
 
112 aa  78.6  0.00000000000003  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
NC_013440  Hoch_1993  transcriptional regulator, PadR-like family  37.89 
 
 
107 aa  78.6  0.00000000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.765293  normal  0.399206 
 
 
-
 
NC_008531  LEUM_2045  PadR family transcriptional regulator  34.26 
 
 
116 aa  78.6  0.00000000000003  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0175  transcriptional regulator, PadR-like family  36.94 
 
 
110 aa  75.9  0.0000000000002  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_2975  PadR-like family transcriptional regulator  38.95 
 
 
117 aa  75.9  0.0000000000002  Salinispora arenicola CNS-205  Bacteria  normal  0.351973  hitchhiker  0.000108839 
 
 
-
 
NC_013510  Tcur_4741  transcriptional regulator, PadR-like family  34.21 
 
 
116 aa  75.9  0.0000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1087  PadR family transcriptional regulator  33.02 
 
 
113 aa  75.1  0.0000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0408636 
 
 
-
 
NC_008009  Acid345_2046  PadR family transcriptional regulator  36 
 
 
109 aa  75.1  0.0000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3025  transcriptional regulator, PadR-like family  37.11 
 
 
112 aa  74.7  0.0000000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.361179  normal  0.13274 
 
 
-
 
NC_009712  Mboo_0346  PadR-like family transcriptional regulator  35.71 
 
 
108 aa  74.7  0.0000000000004  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_013595  Sros_3281  PadR family transcriptional regulator  33.65 
 
 
109 aa  73.9  0.0000000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4791  transcriptional regulator, PadR-like family  37.96 
 
 
113 aa  73.9  0.0000000000006  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5790  transcriptional regulator, PadR-like family  35.58 
 
 
128 aa  73.9  0.0000000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.120681  normal 
 
 
-
 
NC_006274  BCZK4436  PadR family transcriptional regulator  37.62 
 
 
122 aa  73.2  0.000000000001  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2396  transcriptional regulator, PadR-like family  38.46 
 
 
111 aa  73.2  0.000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.109028  normal  0.171865 
 
 
-
 
NC_011365  Gdia_0204  transcriptional regulator, PadR-like family  34.69 
 
 
111 aa  73.2  0.000000000001  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.100896 
 
 
-
 
NC_013739  Cwoe_1974  transcriptional regulator, PadR-like family  34.62 
 
 
117 aa  72.4  0.000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.37722 
 
 
-
 
NC_003909  BCE_4828  30S ribosomal protein S14 homolog-related  36.19 
 
 
114 aa  72.4  0.000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4516  PadR-like family transcriptional regulator  37.62 
 
 
114 aa  72.4  0.000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4418  PadR family transcriptional regulator  36.19 
 
 
114 aa  72.4  0.000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2897  PadR family transcriptional regulator  30.1 
 
 
113 aa  72.8  0.000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.743193  normal 
 
 
-
 
NC_009485  BBta_0853  PadR family transcriptional regulator  32.35 
 
 
103 aa  72.4  0.000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.293414  normal  0.533668 
 
 
-
 
NC_008009  Acid345_4626  PadR family transcriptional regulator  31.68 
 
 
114 aa  72.4  0.000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.658032 
 
 
-
 
NC_009012  Cthe_1921  PadR family transcriptional regulator  35.48 
 
 
114 aa  72  0.000000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_6512  transcriptional regulator, PadR-like family  37.38 
 
 
114 aa  71.6  0.000000000003  Spirosoma linguale DSM 74  Bacteria  normal  0.299933  normal 
 
 
-
 
NC_010338  Caul_4507  PadR-like family transcriptional regulator  36.45 
 
 
108 aa  71.2  0.000000000004  Caulobacter sp. K31  Bacteria  normal  0.718023  normal  0.823935 
 
 
-
 
NC_012669  Bcav_0360  transcriptional regulator, PadR-like family  35.58 
 
 
107 aa  71.6  0.000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1244  transcriptional regulator, PadR-like family  35.78 
 
 
121 aa  70.9  0.000000000005  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.116978 
 
 
-
 
NC_011989  Avi_4304  hypothetical protein  30.48 
 
 
119 aa  70.9  0.000000000006  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1119  transcriptional regulator, PadR-like family  38.3 
 
 
123 aa  70.5  0.000000000007  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000828793  n/a   
 
 
-
 
NC_008009  Acid345_1891  PadR family transcriptional regulator  35.85 
 
 
134 aa  70.5  0.000000000007  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.240691  normal  0.0316492 
 
 
-
 
NC_005945  BAS3483  hypothetical protein  29.63 
 
 
109 aa  69.7  0.00000000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.134487  n/a   
 
 
-
 
NC_007530  GBAA_3757  hypothetical protein  29.63 
 
 
109 aa  69.7  0.00000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0055  PadR family transcriptional regulator  34.31 
 
 
113 aa  69.3  0.00000000001  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0735  PadR-like family transcriptional regulator  33.65 
 
 
111 aa  70.1  0.00000000001  Thermobispora bispora DSM 43833  Bacteria  normal  hitchhiker  0.0073319 
 
 
-
 
NC_009674  Bcer98_2347  PadR-like family transcriptional regulator  30.19 
 
 
103 aa  68.9  0.00000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.68087  n/a   
 
 
-
 
NC_005957  BT9727_3448  transcriptional regulator  29.63 
 
 
109 aa  69.3  0.00000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4588  transcriptional regulator, PadR-like family  35.24 
 
 
125 aa  69.3  0.00000000002  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.00658109  normal  0.0547899 
 
 
-
 
NC_006274  BCZK3399  transcriptional regulator  29.63 
 
 
109 aa  69.3  0.00000000002  Bacillus cereus E33L  Bacteria  normal  0.314118  n/a   
 
 
-
 
NC_006348  BMA2658  PadR family transcriptional regulator  34.31 
 
 
113 aa  68.9  0.00000000002  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0279  PadR-like family transcriptional regulator  34.31 
 
 
113 aa  69.3  0.00000000002  Burkholderia pseudomallei 1710b  Bacteria  normal  0.360828  n/a   
 
 
-
 
NC_007796  Mhun_0763  PadR-like family transcriptional regulator  31.43 
 
 
108 aa  68.9  0.00000000002  Methanospirillum hungatei JF-1  Archaea  normal  0.31288  normal  0.603278 
 
 
-
 
NC_013521  Sked_29180  predicted transcriptional regulator  36.63 
 
 
151 aa  68.9  0.00000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_0345  PadR family transcriptional regulator  35.79 
 
 
116 aa  69.3  0.00000000002  Lactococcus lactis subsp. cremoris SK11  Bacteria  unclonable  0.00000392744  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3295  PadR family transcriptional regulator  34.31 
 
 
113 aa  68.9  0.00000000002  Burkholderia mallei SAVP1  Bacteria  normal  0.937453  n/a   
 
 
-
 
NC_008836  BMA10229_A1832  PadR family transcriptional regulator  34.31 
 
 
113 aa  68.9  0.00000000002  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0063  PadR family transcriptional regulator  34.31 
 
 
113 aa  68.9  0.00000000002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0062  PadR family transcriptional regulator  34.31 
 
 
113 aa  69.3  0.00000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2720  PadR family transcriptional regulator  34.31 
 
 
113 aa  68.9  0.00000000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0730  PadR family transcriptional regulator  33 
 
 
99 aa  68.2  0.00000000003  Dehalococcoides sp. BAV1  Bacteria  normal  0.118827  n/a   
 
 
-
 
NC_008009  Acid345_3563  PadR family transcriptional regulator  34.62 
 
 
125 aa  68.2  0.00000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5149  transcriptional regulator, PadR-like family  34.29 
 
 
117 aa  68.2  0.00000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0918525  normal 
 
 
-
 
NC_003909  BCE_3730  hypothetical protein  29.63 
 
 
107 aa  68.2  0.00000000004  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1025  transcriptional regulator, PadR-like family  35.11 
 
 
109 aa  67.8  0.00000000005  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.282121  normal  0.0207022 
 
 
-
 
NC_011658  BCAH187_A3753  hypothetical protein  29.63 
 
 
107 aa  67.8  0.00000000005  Bacillus cereus AH187  Bacteria  normal  0.722643  n/a   
 
 
-
 
NC_009664  Krad_2816  transcriptional regulator, PadR-like family  30.39 
 
 
121 aa  67.8  0.00000000005  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.270433  normal  0.376795 
 
 
-
 
NC_013530  Xcel_2076  transcriptional regulator, PadR-like family  32.67 
 
 
126 aa  67.8  0.00000000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.668384  n/a   
 
 
-
 
NC_014165  Tbis_3584  PadR-like family transcriptional regulator  34.34 
 
 
112 aa  67.4  0.00000000006  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0909  transcriptional regulator, PadR-like family  32.08 
 
 
114 aa  67.4  0.00000000006  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_3281  PadR-like family transcriptional regulator  34.34 
 
 
112 aa  67.4  0.00000000006  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.206991 
 
 
-
 
NC_011773  BCAH820_3711  hypothetical protein  29.25 
 
 
107 aa  67.4  0.00000000006  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  3.0645400000000003e-18 
 
 
-
 
NC_010571  Oter_4530  PadR-like family transcriptional regulator  35.05 
 
 
108 aa  67  0.00000000007  Opitutus terrae PB90-1  Bacteria  normal  0.661869  normal 
 
 
-
 
NC_013204  Elen_1533  transcriptional regulator, PadR-like family  35.64 
 
 
120 aa  67.4  0.00000000007  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.310263 
 
 
-
 
NC_013171  Apre_1495  transcriptional regulator, PadR-like family  33.64 
 
 
108 aa  67  0.00000000008  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0778  transcriptional regulator, PadR-like family  32.74 
 
 
115 aa  66.6  0.00000000009  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3153  PadR-like family transcriptional regulator  34.94 
 
 
85 aa  67  0.00000000009  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
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