More than 300 homologs were found in PanDaTox collection
for query gene Ccel_2646 on replicon NC_011898
Organism: Clostridium cellulolyticum H10



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011898  Ccel_2646  two component transcriptional regulator, LytTR family  100 
 
 
252 aa  517  1e-146  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2425  two component transcriptional regulator, LytTR family  35.74 
 
 
242 aa  165  5.9999999999999996e-40  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3118  LytTR family two component transcriptional regulator  28.63 
 
 
236 aa  119  3.9999999999999996e-26  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00259319  n/a   
 
 
-
 
NC_013204  Elen_1697  two component transcriptional regulator, LytTR family  33.18 
 
 
240 aa  114  1.0000000000000001e-24  Eggerthella lenta DSM 2243  Bacteria  normal  0.325505  normal 
 
 
-
 
NC_013174  Jden_0468  two component transcriptional regulator, LytTR family  30.6 
 
 
244 aa  112  5e-24  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_1600  LytTR family two component transcriptional regulator  27.85 
 
 
245 aa  108  9.000000000000001e-23  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE0033  DNA-binding response regulator  31.96 
 
 
239 aa  103  2e-21  Treponema denticola ATCC 35405  Bacteria  hitchhiker  0.00150761  n/a   
 
 
-
 
NC_011830  Dhaf_1994  two component transcriptional regulator, LytTR family  30.94 
 
 
236 aa  103  2e-21  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1167  two component transcriptional regulator, LytTR family  26.03 
 
 
245 aa  102  6e-21  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2270  two component transcriptional regulator, LytTR family  26.27 
 
 
234 aa  99  7e-20  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0486  DNA-binding response regulator  29.06 
 
 
238 aa  97.4  2e-19  Clostridium perfringens SM101  Bacteria  normal  0.0347807  n/a   
 
 
-
 
NC_013216  Dtox_2345  two component transcriptional regulator, LytTR family  26.27 
 
 
240 aa  96.3  4e-19  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.681344 
 
 
-
 
NC_008261  CPF_0498  DNA-binding response regulator  29.06 
 
 
238 aa  95.9  6e-19  Clostridium perfringens ATCC 13124  Bacteria  decreased coverage  0.0000000794566  n/a   
 
 
-
 
NC_008532  STER_0583  response regulator  26.89 
 
 
236 aa  95.5  7e-19  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_10420  two component transcriptional regulator, LytTR family  27.53 
 
 
253 aa  94  2e-18  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000460621  n/a   
 
 
-
 
NC_013521  Sked_02240  response regulator of the LytR/AlgR family  30.45 
 
 
237 aa  94.4  2e-18  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_0119  response regulator receiver protein  30.81 
 
 
249 aa  92  8e-18  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1569  two component transcriptional regulator, LytTR family  28.77 
 
 
240 aa  91.7  1e-17  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  hitchhiker  0.00000000000000531282 
 
 
-
 
NC_009953  Sare_5008  LytTR family two component transcriptional regulator  29.35 
 
 
250 aa  90.1  3e-17  Salinispora arenicola CNS-205  Bacteria  normal  0.135227  hitchhiker  0.0000288771 
 
 
-
 
NC_009380  Strop_4494  LytTr DNA-binding region  29.44 
 
 
250 aa  90.1  3e-17  Salinispora tropica CNB-440  Bacteria  normal  0.0706486  normal  0.304613 
 
 
-
 
NC_011899  Hore_01640  two component transcriptional regulator, LytTR family  28.21 
 
 
238 aa  85.1  9e-16  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1924  two component transcriptional regulator, LytTR family  31.48 
 
 
250 aa  85.1  0.000000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2723  putative two-component response-regulatory protein YehT  30.96 
 
 
239 aa  84  0.000000000000002  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1621  LytR/AlgR family transcriptional regulator  29.81 
 
 
245 aa  83.6  0.000000000000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_1482  LytTr family DNA-binding response regulator  26.5 
 
 
236 aa  83.6  0.000000000000003  Clostridium perfringens SM101  Bacteria  hitchhiker  0.00010327  n/a   
 
 
-
 
NC_014210  Ndas_4129  two component transcriptional regulator, LytTR family  27.35 
 
 
271 aa  83.6  0.000000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1083  putative two-component response-regulatory protein YehT  30.81 
 
 
239 aa  83.2  0.000000000000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.450563  normal 
 
 
-
 
NC_008340  Mlg_2671  response regulator receiver protein  27.6 
 
 
243 aa  83.2  0.000000000000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  hitchhiker  0.000000000586434 
 
 
-
 
NC_008261  CPF_1752  LytTr family DNA-binding response regulator  25.86 
 
 
236 aa  82.4  0.000000000000006  Clostridium perfringens ATCC 13124  Bacteria  decreased coverage  0.000046925  n/a   
 
 
-
 
NC_010320  Teth514_0498  LytTR family two component transcriptional regulator  27.57 
 
 
236 aa  81.3  0.00000000000001  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00022884  n/a   
 
 
-
 
NC_010658  SbBS512_E0865  putative two-component response-regulatory protein YehT  32 
 
 
239 aa  81.3  0.00000000000002  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_1323  two component transcriptional regulator, LytTR family  30.8 
 
 
237 aa  80.9  0.00000000000002  Atopobium parvulum DSM 20469  Bacteria  normal  0.0540721  normal  0.0273831 
 
 
-
 
NC_011205  SeD_A2505  putative two-component response-regulatory protein YehT  30.5 
 
 
239 aa  80.1  0.00000000000003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2393  putative two-component response-regulatory protein YehT  30.5 
 
 
239 aa  80.1  0.00000000000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2304  putative two-component response-regulatory protein YehT  30.5 
 
 
239 aa  80.1  0.00000000000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2348  putative two-component response-regulatory protein YehT  30.5 
 
 
239 aa  80.1  0.00000000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2397  putative two-component response-regulatory protein YehT  30.5 
 
 
239 aa  80.1  0.00000000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.423362  normal 
 
 
-
 
NC_008346  Swol_2400  response regulator receiver protein  28.88 
 
 
236 aa  80.1  0.00000000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.14107  n/a   
 
 
-
 
NC_014230  CA2559_04910  two-component system response regulator  29.21 
 
 
236 aa  80.5  0.00000000000003  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.981835  n/a   
 
 
-
 
NC_009616  Tmel_0114  LytTR family two component transcriptional regulator  26.27 
 
 
226 aa  79.7  0.00000000000004  Thermosipho melanesiensis BI429  Bacteria  normal  0.310837  n/a   
 
 
-
 
CP001509  ECD_02054  predicted response regulator in two-component system withYehU  31.5 
 
 
239 aa  78.6  0.00000000000009  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1533  two component transcriptional regulator, LytTR family  31.5 
 
 
239 aa  78.6  0.00000000000009  Escherichia coli DH1  Bacteria  normal  0.726215  n/a   
 
 
-
 
NC_012892  B21_02012  hypothetical protein  31.5 
 
 
239 aa  78.6  0.00000000000009  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1522  putative two-component response-regulatory protein YehT  31.5 
 
 
239 aa  78.6  0.00000000000009  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2259  putative two-component response-regulatory protein YehT  31.5 
 
 
239 aa  78.6  0.00000000000009  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2413  putative two-component response-regulatory protein YehT  31.5 
 
 
239 aa  78.6  0.00000000000009  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_3112  putative two-component response-regulatory protein YehT  31.5 
 
 
239 aa  78.6  0.00000000000009  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.148941 
 
 
-
 
NC_013216  Dtox_3773  two component transcriptional regulator, LytTR family  30.04 
 
 
260 aa  78.2  0.0000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.10961  normal 
 
 
-
 
NC_011138  MADE_01918  putative response regulator in two-component regulatory system  27.09 
 
 
275 aa  78.2  0.0000000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.159199  n/a   
 
 
-
 
NC_013159  Svir_00870  response regulator of the LytR/AlgR family  28.72 
 
 
272 aa  77.4  0.0000000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_0919  putative two-component response-regulatory protein YehT  31.5 
 
 
239 aa  77.8  0.0000000000002  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0224  putative two-component response-regulatory protein YehT  29.82 
 
 
237 aa  77.4  0.0000000000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4408  two component transcriptional regulator, LytTR family  26.34 
 
 
268 aa  77  0.0000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0097  LytR/AlgR family transcriptional regulator  24.65 
 
 
245 aa  76.6  0.0000000000004  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1393  two component transcriptional regulator, LytTR family  27.46 
 
 
238 aa  76.6  0.0000000000004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000000160197 
 
 
-
 
NC_013061  Phep_3408  LytTr DNA-binding region  27.54 
 
 
240 aa  75.9  0.0000000000005  Pedobacter heparinus DSM 2366  Bacteria  normal  0.111489  normal 
 
 
-
 
NC_008541  Arth_1375  response regulator receiver protein  28.96 
 
 
239 aa  75.5  0.0000000000007  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2172  LytR/AlgR family transcriptional regulator  29.25 
 
 
252 aa  75.5  0.0000000000009  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0721488  normal  0.0255714 
 
 
-
 
NC_013037  Dfer_5303  two component transcriptional regulator, LytTR family  26.85 
 
 
261 aa  74.7  0.000000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.153649 
 
 
-
 
NC_007644  Moth_1964  LytR/AlgR family transcriptional regulator  29.56 
 
 
255 aa  74.7  0.000000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.777054 
 
 
-
 
NC_008009  Acid345_0420  LytR/AlgR family transcriptional regulator  31.07 
 
 
317 aa  75.1  0.000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0328897  normal  0.0302219 
 
 
-
 
NC_011901  Tgr7_0031  response regulator receiver protein  26.51 
 
 
243 aa  75.1  0.000000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3487  LytR/AlgR family transcriptional regulator  26.8 
 
 
253 aa  74.7  0.000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.76921  normal 
 
 
-
 
NC_013061  Phep_2253  LytTr DNA-binding region  27.23 
 
 
248 aa  74.7  0.000000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0764  two component transcriptional regulator, LytTR family  25.57 
 
 
245 aa  74.3  0.000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.626213 
 
 
-
 
NC_007333  Tfu_2858  response regulator receiver  29.66 
 
 
264 aa  73.9  0.000000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_3124  LytTr DNA-binding region  30.32 
 
 
244 aa  74.3  0.000000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4134  LytTR family two component transcriptional regulator  26.91 
 
 
243 aa  73.9  0.000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.291369  n/a   
 
 
-
 
NC_010571  Oter_2329  LytTR family two component transcriptional regulator  28.69 
 
 
255 aa  74.3  0.000000000002  Opitutus terrae PB90-1  Bacteria  normal  0.0531557  decreased coverage  0.00207881 
 
 
-
 
NC_010718  Nther_2142  two component transcriptional regulator, LytTR family  28.57 
 
 
238 aa  73.9  0.000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2762  response regulator receiver protein  27.85 
 
 
254 aa  73.9  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.330347  normal  0.784413 
 
 
-
 
NC_009441  Fjoh_1679  LytTR family two component transcriptional regulator  23.63 
 
 
238 aa  73.9  0.000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0057  response regulator receiver protein  27.07 
 
 
243 aa  73.6  0.000000000003  Shewanella sp. MR-4  Bacteria  decreased coverage  0.0000048418  decreased coverage  0.0000000648872 
 
 
-
 
NC_008322  Shewmr7_0055  response regulator receiver protein  27.07 
 
 
243 aa  73.6  0.000000000003  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000989316  hitchhiker  0.000468323 
 
 
-
 
NC_008740  Maqu_0488  response regulator receiver protein  28.46 
 
 
252 aa  73.6  0.000000000003  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4084  two component transcriptional regulator, LytTR family  25.11 
 
 
244 aa  73.2  0.000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.445273  normal  0.0209217 
 
 
-
 
NC_009997  Sbal195_0060  LytTR family two component transcriptional regulator  27.07 
 
 
243 aa  73.2  0.000000000004  Shewanella baltica OS195  Bacteria  normal  0.0478076  hitchhiker  0.000497336 
 
 
-
 
NC_011663  Sbal223_0059  two component transcriptional regulator, LytTR family  27.07 
 
 
243 aa  73.2  0.000000000004  Shewanella baltica OS223  Bacteria  normal  0.182784  normal 
 
 
-
 
NC_009708  YpsIP31758_3221  putative two-component response-regulatory protein YehT  29.11 
 
 
238 aa  73.2  0.000000000004  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0068  two component transcriptional regulator, LytTR family  26.05 
 
 
244 aa  73.2  0.000000000004  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.00288448  normal 
 
 
-
 
NC_009052  Sbal_4299  LytTR family two component transcriptional regulator  27.07 
 
 
243 aa  73.2  0.000000000004  Shewanella baltica OS155  Bacteria  decreased coverage  0.000001386  n/a   
 
 
-
 
NC_007298  Daro_2093  putative two-component response-regulatory protein YehT  29.21 
 
 
237 aa  72.8  0.000000000005  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2883  putative two-component response-regulatory protein YehT  29.32 
 
 
236 aa  72.4  0.000000000006  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.0000000903631  unclonable  0.0000000000401288 
 
 
-
 
NC_007517  Gmet_2697  LytR/AlgR family transcriptional regulator  29.25 
 
 
240 aa  72.4  0.000000000006  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0055  LytTR family two component transcriptional regulator  26.52 
 
 
243 aa  72.4  0.000000000007  Shewanella baltica OS185  Bacteria  normal  0.868518  n/a   
 
 
-
 
NC_010465  YPK_3358  putative two-component response-regulatory protein YehT  29.11 
 
 
238 aa  72.4  0.000000000007  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3485  putative two-component response-regulatory protein YehT  29.11 
 
 
238 aa  72.4  0.000000000007  Yersinia pestis Angola  Bacteria  normal  normal  0.159726 
 
 
-
 
NC_009441  Fjoh_1345  LytTR family two component transcriptional regulator  27.05 
 
 
234 aa  72  0.000000000007  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1879  two component transcriptional regulator, LytTR family  25.91 
 
 
249 aa  72  0.000000000008  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.247337  n/a   
 
 
-
 
NC_009675  Anae109_1440  putative two-component response-regulatory protein YehT  27.66 
 
 
236 aa  72  0.000000000008  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0959  putative two-component response-regulatory protein YehT  27.85 
 
 
241 aa  72  0.000000000008  Dickeya zeae Ech1591  Bacteria  normal  0.606019  n/a   
 
 
-
 
NC_013216  Dtox_2766  two component transcriptional regulator, LytTR family  29.01 
 
 
241 aa  72  0.000000000008  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2171  two component transcriptional regulator, LytTR family  25.34 
 
 
249 aa  72  0.000000000009  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0294549  n/a   
 
 
-
 
NC_008699  Noca_0357  response regulator receiver  29.13 
 
 
249 aa  72  0.000000000009  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3405  LytTR family two component transcriptional regulator  28.11 
 
 
244 aa  72  0.000000000009  Serratia proteamaculans 568  Bacteria  normal  0.732179  normal 
 
 
-
 
NC_013216  Dtox_1869  two component transcriptional regulator, LytTR family  27.42 
 
 
243 aa  71.6  0.00000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  unclonable  0.00000000208305  normal  0.145854 
 
 
-
 
NC_010506  Swoo_1765  putative two-component response-regulatory protein YehT  29.65 
 
 
232 aa  71.6  0.00000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  0.199181  hitchhiker  0.00544661 
 
 
-
 
NC_013162  Coch_1645  two component transcriptional regulator, LytTR family  27.64 
 
 
232 aa  71.6  0.00000000001  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2242  two component transcriptional regulator, LytTR family  27.59 
 
 
244 aa  71.6  0.00000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_0957  putative two-component response-regulatory protein YehT  28.27 
 
 
241 aa  71.6  0.00000000001  Dickeya dadantii Ech703  Bacteria  normal  0.147856  n/a   
 
 
-
 
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