More than 300 homologs were found in PanDaTox collection
for query gene Caci_7093 on replicon NC_013131
Organism: Catenulispora acidiphila DSM 44928



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013131  Caci_7093  extracellular solute-binding protein family 1  100 
 
 
432 aa  887    Catenulispora acidiphila DSM 44928  Bacteria  normal  0.069875  normal  0.148592 
 
 
-
 
NC_008699  Noca_3229  extracellular solute-binding protein  36.56 
 
 
408 aa  259  6e-68  Nocardioides sp. JS614  Bacteria  normal  0.712082  n/a   
 
 
-
 
NC_013739  Cwoe_0915  extracellular solute-binding protein family 1  33.64 
 
 
407 aa  240  2.9999999999999997e-62  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4278  extracellular solute-binding protein family 1  35.61 
 
 
389 aa  236  6e-61  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1496  extracellular solute-binding protein family 1  34.21 
 
 
401 aa  223  4e-57  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1882  Spermidine/putrescine-binding periplasmic protein-like protein  35.49 
 
 
413 aa  205  1e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2566  twin-arginine translocation pathway signal  29.97 
 
 
396 aa  196  5.000000000000001e-49  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2611  extracellular solute-binding protein  29.97 
 
 
396 aa  196  5.000000000000001e-49  Mycobacterium sp. KMS  Bacteria  normal  0.768707  normal 
 
 
-
 
NC_009077  Mjls_2605  extracellular solute-binding protein  29.71 
 
 
396 aa  195  1e-48  Mycobacterium sp. JLS  Bacteria  normal  0.111757  normal 
 
 
-
 
NC_008726  Mvan_3388  extracellular solute-binding protein  33.12 
 
 
393 aa  192  1e-47  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.645484 
 
 
-
 
NC_008578  Acel_1283  twin-arginine translocation pathway signal  32.46 
 
 
420 aa  191  2e-47  Acidothermus cellulolyticus 11B  Bacteria  hitchhiker  0.00667141  normal  0.645291 
 
 
-
 
NC_013510  Tcur_3395  extracellular solute-binding protein family 1  32.89 
 
 
416 aa  191  2e-47  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_0022  extracellular solute-binding protein  33.53 
 
 
417 aa  191  2e-47  Frankia sp. EAN1pec  Bacteria  normal  0.68503  normal 
 
 
-
 
NC_009338  Mflv_3137  extracellular solute-binding protein  28.98 
 
 
393 aa  186  9e-46  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.713269  normal 
 
 
-
 
NC_014165  Tbis_1010  extracellular solute-binding protein family 1  32.52 
 
 
419 aa  182  1e-44  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.227353 
 
 
-
 
NC_007333  Tfu_0281  putative polyamine-binding lipoprotein  32.21 
 
 
412 aa  172  7.999999999999999e-42  Thermobifida fusca YX  Bacteria  normal  0.565719  n/a   
 
 
-
 
NC_013093  Amir_5897  extracellular solute-binding protein family 1  32.72 
 
 
383 aa  140  3.9999999999999997e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3951  extracellular solute-binding protein  29.16 
 
 
366 aa  137  3.0000000000000003e-31  Caulobacter sp. K31  Bacteria  normal  0.0469175  normal 
 
 
-
 
NC_011729  PCC7424_1221  extracellular solute-binding protein family 1  28.03 
 
 
359 aa  135  9.999999999999999e-31  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008312  Tery_2816  extracellular solute-binding protein  27.52 
 
 
354 aa  131  3e-29  Trichodesmium erythraeum IMS101  Bacteria  normal  0.293576  normal  0.888288 
 
 
-
 
NC_011894  Mnod_4949  extracellular solute-binding protein family 1  32.54 
 
 
366 aa  129  8.000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.597771  n/a   
 
 
-
 
NC_010511  M446_4922  extracellular solute-binding protein  32.24 
 
 
365 aa  129  9.000000000000001e-29  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_2377  extracellular solute-binding protein family 1  30.2 
 
 
372 aa  125  1e-27  Halothiobacillus neapolitanus c2  Bacteria  normal  0.0307958  n/a   
 
 
-
 
NC_009719  Plav_1551  extracellular solute-binding protein  29.19 
 
 
363 aa  124  4e-27  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.161993  normal 
 
 
-
 
NC_007519  Dde_3673  polyamine ABC transporter, periplasmic polyamine-binding protein  29.11 
 
 
348 aa  121  1.9999999999999998e-26  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0946  extracellular solute-binding protein  30.3 
 
 
366 aa  122  1.9999999999999998e-26  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4501  extracellular solute-binding protein family 1  30.95 
 
 
367 aa  121  3e-26  Methylobacterium populi BJ001  Bacteria  normal  0.410168  normal  0.591091 
 
 
-
 
NC_009668  Oant_3928  extracellular solute-binding protein  32.47 
 
 
367 aa  121  3e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2913  extracellular solute-binding protein  27.81 
 
 
363 aa  120  4.9999999999999996e-26  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_1501  extracellular solute-binding protein  29.11 
 
 
371 aa  119  9e-26  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1368  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  29.54 
 
 
370 aa  119  9.999999999999999e-26  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_2730  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  28.38 
 
 
369 aa  117  3e-25  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2645  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  28.38 
 
 
369 aa  117  3e-25  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1563  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  28.38 
 
 
369 aa  117  3e-25  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_1556  putative spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein  30.72 
 
 
367 aa  116  7.999999999999999e-25  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1378  extracellular solute-binding protein  31.54 
 
 
339 aa  116  8.999999999999998e-25  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.303939  normal  0.180418 
 
 
-
 
NC_014212  Mesil_1566  extracellular solute-binding protein family 1  31.75 
 
 
346 aa  115  1.0000000000000001e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  0.127283  normal 
 
 
-
 
NC_010172  Mext_4019  extracellular solute-binding protein  29.62 
 
 
367 aa  115  1.0000000000000001e-24  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.612389 
 
 
-
 
NC_007643  Rru_A1018  extracellular solute-binding protein  29.03 
 
 
369 aa  115  1.0000000000000001e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1736  extracellular solute-binding protein  29.33 
 
 
375 aa  115  1.0000000000000001e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.0000683653 
 
 
-
 
NC_011757  Mchl_4388  extracellular solute-binding protein family 1  29.33 
 
 
367 aa  115  2.0000000000000002e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.926126  normal  0.244304 
 
 
-
 
NC_009674  Bcer98_1010  extracellular solute-binding protein  28.49 
 
 
350 aa  115  2.0000000000000002e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR1612  spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein, putative  30.43 
 
 
367 aa  114  3e-24  Brucella suis 1330  Bacteria  normal  0.875795  n/a   
 
 
-
 
NC_010505  Mrad2831_0935  extracellular solute-binding protein  30.15 
 
 
375 aa  114  3e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.458503  normal  0.516167 
 
 
-
 
NC_009049  Rsph17029_1060  extracellular solute-binding protein  31.65 
 
 
341 aa  114  3e-24  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0179336  normal  0.353735 
 
 
-
 
NC_011663  Sbal223_3192  extracellular solute-binding protein family 1  29.62 
 
 
366 aa  114  4.0000000000000004e-24  Shewanella baltica OS223  Bacteria  normal  0.683038  hitchhiker  0.00622676 
 
 
-
 
NC_007493  RSP_2397  ABC putrescine transporter, periplasmic substrate-binding subunit  31.65 
 
 
339 aa  114  4.0000000000000004e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.177339  n/a   
 
 
-
 
NC_008261  CPF_2226  spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein  27.46 
 
 
360 aa  114  4.0000000000000004e-24  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_3000  extracellular solute-binding protein  29.39 
 
 
387 aa  114  4.0000000000000004e-24  Shewanella sp. MR-7  Bacteria  decreased coverage  0.00190221  normal 
 
 
-
 
NC_009438  Sputcn32_1094  extracellular solute-binding protein  28.9 
 
 
366 aa  114  5e-24  Shewanella putrefaciens CN-32  Bacteria  normal  0.799805  n/a   
 
 
-
 
NC_011769  DvMF_1957  extracellular solute-binding protein family 1  29.67 
 
 
358 aa  114  5e-24  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013946  Mrub_1927  extracellular solute-binding protein family 1  25.96 
 
 
341 aa  113  6e-24  Meiothermus ruber DSM 1279  Bacteria  normal  0.96322  hitchhiker  0.000000194914 
 
 
-
 
NC_008577  Shewana3_3097  extracellular solute-binding protein  29.11 
 
 
387 aa  113  7.000000000000001e-24  Shewanella sp. ANA-3  Bacteria  normal  0.0218628  normal 
 
 
-
 
NC_008321  Shewmr4_2918  extracellular solute-binding protein  29.11 
 
 
387 aa  113  7.000000000000001e-24  Shewanella sp. MR-4  Bacteria  decreased coverage  0.000482793  normal  0.320993 
 
 
-
 
CP001637  EcDH1_2788  extracellular solute-binding protein family 1  28.46 
 
 
370 aa  112  1.0000000000000001e-23  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2867  extracellular solute-binding protein  29.19 
 
 
345 aa  112  1.0000000000000001e-23  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1270  polyamine ABC transporter, periplasmic polyamine-binding protein  28.77 
 
 
367 aa  112  1.0000000000000001e-23  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_1108  extracellular solute-binding protein  29.33 
 
 
366 aa  112  1.0000000000000001e-23  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000316767  n/a   
 
 
-
 
NC_010658  SbBS512_E2477  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  28.46 
 
 
370 aa  112  1.0000000000000001e-23  Shigella boydii CDC 3083-94  Bacteria  normal  0.996224  n/a   
 
 
-
 
NC_011369  Rleg2_0375  extracellular solute-binding protein family 1  29.77 
 
 
365 aa  111  2.0000000000000002e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  hitchhiker  0.00751674  decreased coverage  0.000421612 
 
 
-
 
CP001509  ECD_00859  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  28.46 
 
 
370 aa  111  3e-23  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00865  hypothetical protein  28.46 
 
 
370 aa  111  3e-23  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1117  extracellular solute-binding protein  27.92 
 
 
368 aa  110  3e-23  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.661593  normal 
 
 
-
 
NC_009800  EcHS_A0957  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  28.46 
 
 
370 aa  111  3e-23  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2742  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  28.46 
 
 
370 aa  111  3e-23  Escherichia coli ATCC 8739  Bacteria  normal  0.602994  normal  0.252845 
 
 
-
 
NC_008528  OEOE_0633  spermidine/putrescine-binding periplasmic protein  25.57 
 
 
363 aa  111  3e-23  Oenococcus oeni PSU-1  Bacteria  normal  0.176739  n/a   
 
 
-
 
NC_011094  SeSA_A1030  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  29.81 
 
 
371 aa  110  4.0000000000000004e-23  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.491177  normal 
 
 
-
 
NC_011149  SeAg_B0914  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  29.81 
 
 
371 aa  110  4.0000000000000004e-23  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1011  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  29.81 
 
 
371 aa  110  4.0000000000000004e-23  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0982  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  29.81 
 
 
371 aa  110  4.0000000000000004e-23  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.156512  normal 
 
 
-
 
NC_008262  CPR_1938  spermidine/putrescine-binding periplasmic protein precursor  27.46 
 
 
360 aa  110  4.0000000000000004e-23  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0926  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  29 
 
 
370 aa  110  5e-23  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2337  extracellular solute-binding protein  29.45 
 
 
368 aa  110  5e-23  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_1010  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  28.69 
 
 
370 aa  110  5e-23  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.274464  normal  0.285031 
 
 
-
 
NC_003910  CPS_0103  putrescine ABC transporter, periplasmic putrescine-binding protein  29.08 
 
 
369 aa  110  6e-23  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2404  extracellular solute-binding protein family 1  28.71 
 
 
342 aa  110  6e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0819  ABC transporter substrate binding protein (putrescine)  28.65 
 
 
371 aa  110  6e-23  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1166  extracellular solute-binding protein  29.03 
 
 
366 aa  110  7.000000000000001e-23  Shewanella baltica OS185  Bacteria  decreased coverage  0.0000290123  n/a   
 
 
-
 
NC_008254  Meso_0163  extracellular solute-binding protein  28.36 
 
 
365 aa  110  7.000000000000001e-23  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1131  extracellular solute-binding protein  29.79 
 
 
366 aa  109  9.000000000000001e-23  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_1204  extracellular solute-binding protein  29.78 
 
 
349 aa  109  9.000000000000001e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1903  polyamine ABC transporter system, substrate-binding protein  30.21 
 
 
376 aa  109  1e-22  Methylibium petroleiphilum PM1  Bacteria  normal  0.0765034  normal  0.376204 
 
 
-
 
NC_009997  Sbal195_1199  extracellular solute-binding protein  29.03 
 
 
366 aa  109  1e-22  Shewanella baltica OS195  Bacteria  decreased coverage  0.000384833  normal 
 
 
-
 
NC_009972  Haur_1064  extracellular solute-binding protein  27.23 
 
 
373 aa  109  1e-22  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2386  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  29.2 
 
 
369 aa  109  1e-22  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2287  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  29.46 
 
 
369 aa  108  2e-22  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0882  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  28.18 
 
 
370 aa  108  2e-22  Escherichia coli SMS-3-5  Bacteria  normal  0.360261  normal 
 
 
-
 
NC_007969  Pcryo_2162  extracellular solute-binding protein  28.96 
 
 
374 aa  108  2e-22  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_1645  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  27.25 
 
 
369 aa  108  2e-22  Serratia proteamaculans 568  Bacteria  normal  normal  0.0561958 
 
 
-
 
NC_011080  SNSL254_A0950  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  29.53 
 
 
371 aa  107  3e-22  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1692  putrescine transporter subunit: periplasmic-binding component of ABC superfamily  28.99 
 
 
369 aa  107  4e-22  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4671  putrescine ABC transporter, periplasmic putrescine-binding protein  27.68 
 
 
361 aa  107  6e-22  Colwellia psychrerythraea 34H  Bacteria  normal  0.728612  n/a   
 
 
-
 
NC_009656  PSPA7_0392  polyamine transport protein  29.81 
 
 
365 aa  107  6e-22  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1401  spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein  28.21 
 
 
349 aa  106  7e-22  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1202  spermidine/putrescine ABC transporter spermidine/putrescine-binding protein  28.21 
 
 
345 aa  106  7e-22  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1180  spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein  28.21 
 
 
349 aa  106  7e-22  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1182  spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein  28.21 
 
 
349 aa  106  7e-22  Bacillus cereus E33L  Bacteria  normal  0.69652  n/a   
 
 
-
 
NC_007530  GBAA_1300  spermidine/putrescine ABC transporter spermidine/putrescine-binding protein  28.21 
 
 
345 aa  106  7e-22  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1378  spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein  28.21 
 
 
349 aa  106  7e-22  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00178306 
 
 
-
 
NC_007406  Nwi_1241  extracellular solute-binding protein  27.79 
 
 
371 aa  106  8e-22  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.447743  normal 
 
 
-
 
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