62 homologs were found in PanDaTox collection
for query gene Caci_5368 on replicon NC_013131
Organism: Catenulispora acidiphila DSM 44928



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013131  Caci_5368  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  100 
 
 
589 aa  1195    Catenulispora acidiphila DSM 44928  Bacteria  normal  0.621632  normal  0.350782 
 
 
-
 
NC_009972  Haur_2270  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  33.27 
 
 
748 aa  243  6e-63  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000172268  n/a   
 
 
-
 
NC_013595  Sros_3587  Negative regulator of beta-lactamase expression- like protein  37.59 
 
 
467 aa  221  3.9999999999999997e-56  Streptosporangium roseum DSM 43021  Bacteria  normal  0.115346  normal  0.267565 
 
 
-
 
NC_013093  Amir_2500  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  36.77 
 
 
628 aa  217  5.9999999999999996e-55  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2196  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  37.4 
 
 
490 aa  214  4.9999999999999996e-54  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.800961  n/a   
 
 
-
 
NC_013526  Tter_2101  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  29.45 
 
 
638 aa  209  1e-52  Thermobaculum terrenum ATCC BAA-798  Bacteria  unclonable  0.000000000444895  n/a   
 
 
-
 
NC_013595  Sros_5785  N-acetylmuramoyl-L-alanine amidase  38.97 
 
 
477 aa  207  5e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.204427  normal  0.0325548 
 
 
-
 
NC_013595  Sros_3389  Negative regulator of beta-lactamase expression- like protein  39.32 
 
 
480 aa  205  2e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7871  N-acetylmuramoyl-L-alanine amidase  39.19 
 
 
508 aa  197  5.000000000000001e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_3112  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  34.9 
 
 
496 aa  189  1e-46  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_6369  N-acetylmuramyl-L-alanine amidase negative regulator of AmpC, AmpD  34.39 
 
 
646 aa  185  2.0000000000000003e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6273  Negative regulator of beta-lactamase expression- like protein  34.83 
 
 
666 aa  182  2e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.297593  normal  0.0360395 
 
 
-
 
NC_013595  Sros_8138  Negative regulator of beta-lactamase expression- like protein  28.59 
 
 
646 aa  180  4.999999999999999e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.215113  normal  0.487089 
 
 
-
 
NC_013947  Snas_1933  N-acetylmuramyl-L-alanine amidase negative regulator of AmpC, AmpD  40.52 
 
 
330 aa  125  2e-27  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_6415  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  26.94 
 
 
551 aa  83.6  0.00000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_3051  negative regulator of AmpC, AmpD  31.47 
 
 
234 aa  55.1  0.000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.8874  n/a   
 
 
-
 
NC_009524  PsycPRwf_0512  N-acetyl-anhydromuranmyl-L-alanine amidase  31.34 
 
 
206 aa  54.3  0.000006  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0960  AmpD (negative regulator of AmpC)  27.89 
 
 
241 aa  52.8  0.00002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0865958  n/a   
 
 
-
 
NC_008346  Swol_1062  negative regulator of beta-lactamase expression-like protein  24.44 
 
 
222 aa  52.4  0.00002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2966  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  28.1 
 
 
242 aa  51.2  0.00005  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000101487  n/a   
 
 
-
 
NC_011989  Avi_2906  N-acetylmuramoyl-L-alanine amidase  27.51 
 
 
252 aa  50.4  0.00008  Agrobacterium vitis S4  Bacteria  normal  0.923766  n/a   
 
 
-
 
NC_009441  Fjoh_4944  N-acetylmuramoyl-L-alanine amidase  31.58 
 
 
301 aa  50.4  0.00008  Flavobacterium johnsoniae UW101  Bacteria  normal  0.038406  n/a   
 
 
-
 
NC_007204  Psyc_1757  N-acetyl-anhydromuranmyl-L-alanine amidase  35.2 
 
 
196 aa  50.4  0.0001  Psychrobacter arcticus 273-4  Bacteria  normal  0.159015  normal 
 
 
-
 
NC_010338  Caul_3680  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  26.42 
 
 
243 aa  49.3  0.0002  Caulobacter sp. K31  Bacteria  normal  0.86041  normal  0.729669 
 
 
-
 
NC_011071  Smal_0115  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  28.38 
 
 
252 aa  48.5  0.0003  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0625458 
 
 
-
 
NC_008044  TM1040_1916  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  29.79 
 
 
219 aa  48.1  0.0004  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2282  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  36.47 
 
 
641 aa  48.5  0.0004  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.169822 
 
 
-
 
NC_009505  BOV_1400  N-acetylmuramoyl-L-alanine amidase  27.63 
 
 
268 aa  48.1  0.0004  Brucella ovis ATCC 25840  Bacteria  normal  0.896798  n/a   
 
 
-
 
NC_004310  BR1444  N-acetylmuramoyl-L-alanine amidase  27.63 
 
 
268 aa  48.1  0.0004  Brucella suis 1330  Bacteria  normal  0.16069  n/a   
 
 
-
 
NC_013922  Nmag_0865  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  33.02 
 
 
321 aa  47.8  0.0006  Natrialba magadii ATCC 43099  Archaea  normal  0.817413  n/a   
 
 
-
 
NC_009901  Spea_0416  N-acetyl-anhydromuranmyl-L-alanine amidase  34.38 
 
 
180 aa  47  0.001  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_1732  N-acetylmuramoyl-L-alanine amidase  28.46 
 
 
268 aa  46.6  0.001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp0335  hypothetical protein  40.54 
 
 
218 aa  46.6  0.001  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007969  Pcryo_2038  N-acetyl-anhydromuranmyl-L-alanine amidase  33.6 
 
 
196 aa  47  0.001  Psychrobacter cryohalolentis K5  Bacteria  normal  0.591036  normal 
 
 
-
 
NC_009636  Smed_2104  N-acetylmuramoyl-L-alanine amidase  29.01 
 
 
254 aa  45.8  0.002  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.312946 
 
 
-
 
NC_010622  Bphy_2640  N-acetyl-anhydromuranmyl-L-alanine amidase  31.78 
 
 
212 aa  46.2  0.002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0212  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  35.06 
 
 
418 aa  45.8  0.002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.521983 
 
 
-
 
NC_011773  BCAH820_0963  hypothetical protein  32.14 
 
 
579 aa  45.1  0.003  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_008309  HS_0249  N-acetyl-anhydromuranmyl-L-alanine amidase  28.1 
 
 
189 aa  45.4  0.003  Haemophilus somnus 129PT  Bacteria  normal  0.125284  n/a   
 
 
-
 
NC_005945  BAS0829  N-acetylmuramoyl-L-alanine amidase  32.73 
 
 
397 aa  45.1  0.004  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0777  N-acetylmuramoyl-L-alanine amidase  32.14 
 
 
579 aa  45.1  0.004  Bacillus cereus E33L  Bacteria  decreased coverage  0.00112193  n/a   
 
 
-
 
NC_007530  GBAA_0872  N-acetylmuramoyl-L-alanine amidase  32.73 
 
 
348 aa  45.1  0.004  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3384  N-acetyl-anhydromuranmyl-L-alanine amidase  28.03 
 
 
200 aa  45.1  0.004  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_4242  N-acetylmuramoyl-L-alanine amidase family 2  33.66 
 
 
276 aa  44.7  0.005  Pedobacter heparinus DSM 2366  Bacteria  normal  0.26707  normal 
 
 
-
 
NC_003909  BCE_0962  hypothetical protein  28.44 
 
 
579 aa  44.7  0.005  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3403  N-acetylmuramoyl-L-alanine amidase  27.33 
 
 
288 aa  44.7  0.005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0566227  normal 
 
 
-
 
NC_008709  Ping_2940  N-acetyl-anhydromuranmyl-L-alanine amidase  30.51 
 
 
181 aa  44.7  0.005  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.434032 
 
 
-
 
NC_009997  Sbal195_4057  N-acetyl-anhydromuranmyl-L-alanine amidase  31.9 
 
 
187 aa  44.7  0.005  Shewanella baltica OS195  Bacteria  hitchhiker  0.00018717  normal  0.269643 
 
 
-
 
NC_008752  Aave_0865  N-acetyl-anhydromuranmyl-L-alanine amidase  28.97 
 
 
209 aa  44.3  0.006  Acidovorax citrulli AAC00-1  Bacteria  normal  0.27665  normal  0.1095 
 
 
-
 
NC_009484  Acry_2885  N-acetylmuramoyl-L-alanine amidase  27.59 
 
 
220 aa  44.3  0.006  Acidiphilium cryptum JF-5  Bacteria  normal  0.523891  n/a   
 
 
-
 
NC_007951  Bxe_A0519  N-acetyl-anhydromuranmyl-L-alanine amidase  35.9 
 
 
198 aa  44.3  0.006  Burkholderia xenovorans LB400  Bacteria  normal  0.417478  normal 
 
 
-
 
NC_010571  Oter_0962  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  36.71 
 
 
285 aa  44.3  0.006  Opitutus terrae PB90-1  Bacteria  normal  normal  0.56065 
 
 
-
 
NC_006369  lpl0316  hypothetical protein  39.19 
 
 
218 aa  44.3  0.007  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010501  PputW619_5098  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  34.67 
 
 
271 aa  44.3  0.007  Pseudomonas putida W619  Bacteria  normal  normal  0.179835 
 
 
-
 
NC_004347  SO_0421  N-acetyl-anhydromuranmyl-L-alanine amidase  30.47 
 
 
181 aa  44.3  0.007  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013132  Cpin_1458  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  28.08 
 
 
275 aa  43.9  0.008  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1735  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  26.57 
 
 
229 aa  43.9  0.008  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.727181  normal  0.0896689 
 
 
-
 
NC_009523  RoseRS_0690  N-acetylmuramoyl-L-alanine amidase  29.81 
 
 
419 aa  43.9  0.008  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0163104 
 
 
-
 
NC_008228  Patl_3347  N-acetyl-anhydromuranmyl-L-alanine amidase  37.04 
 
 
194 aa  43.9  0.009  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2350  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  31.25 
 
 
304 aa  43.9  0.009  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.568206 
 
 
-
 
NC_011831  Cagg_3633  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  30.88 
 
 
641 aa  43.5  0.01  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_002978  WD1073  N-acetylmuramoyl-L-alanine amidase  25.6 
 
 
497 aa  43.5  0.01  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  unclonable  0.00874601  n/a   
 
 
-
 
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