46 homologs were found in PanDaTox collection
for query gene CPF_1968 on replicon NC_008261
Organism: Clostridium perfringens ATCC 13124



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008261  CPF_1968  putative DNA-binding protein  100 
 
 
112 aa  220  6e-57  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1686  putative DNA-binding protein  98.21 
 
 
112 aa  216  6e-56  Clostridium perfringens SM101  Bacteria  decreased coverage  0.000000027159  n/a   
 
 
-
 
NC_008346  Swol_1499  hypothetical protein  47.57 
 
 
114 aa  76.3  0.0000000000001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0744431  n/a   
 
 
-
 
NC_011830  Dhaf_3762  putative helix-turn-helix protein YlxM/p13 family protein  44.58 
 
 
122 aa  76.6  0.0000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000407263  n/a   
 
 
-
 
NC_011772  BCG9842_B1298  putative DNA-binding protein  43.62 
 
 
110 aa  75.5  0.0000000000002  Bacillus cereus G9842  Bacteria  hitchhiker  0.00000324783  hitchhiker  8.48184e-23 
 
 
-
 
NC_009253  Dred_2057  putative DNA-binding protein  50 
 
 
117 aa  75.9  0.0000000000002  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000575566  n/a   
 
 
-
 
NC_011658  BCAH187_A3894  putative DNA-binding protein  43.62 
 
 
110 aa  75.5  0.0000000000002  Bacillus cereus AH187  Bacteria  unclonable  0.000000001182  n/a   
 
 
-
 
NC_011725  BCB4264_A3945  putative DNA-binding protein  43.62 
 
 
110 aa  75.5  0.0000000000002  Bacillus cereus B4264  Bacteria  hitchhiker  0.000161258  n/a   
 
 
-
 
NC_011773  BCAH820_3860  putative DNA-binding protein  43.62 
 
 
110 aa  75.5  0.0000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  6.54783e-61 
 
 
-
 
NC_007530  GBAA_3984  putative DNA-binding protein  43.62 
 
 
110 aa  75.5  0.0000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000000102788  n/a   
 
 
-
 
NC_006274  BCZK3605  putative DNA-binding protein  43.62 
 
 
110 aa  75.5  0.0000000000002  Bacillus cereus E33L  Bacteria  hitchhiker  0.0000000000422052  n/a   
 
 
-
 
NC_005957  BT9727_3587  putative DNA-binding protein  43.62 
 
 
110 aa  75.5  0.0000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.0000000673817  n/a   
 
 
-
 
NC_005945  BAS3697  putative DNA-binding protein  43.62 
 
 
110 aa  75.5  0.0000000000002  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000000000192847  n/a   
 
 
-
 
NC_003909  BCE_3888  putative DNA-binding protein  43.62 
 
 
110 aa  75.5  0.0000000000002  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00280663  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3669  putative DNA-binding protein  40.78 
 
 
110 aa  74.7  0.0000000000004  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000000687625  n/a   
 
 
-
 
NC_008527  LACR_1522  putative DNA-binding protein  46.6 
 
 
111 aa  74.3  0.0000000000005  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.0239246  n/a   
 
 
-
 
NC_009674  Bcer98_2498  putative DNA-binding protein  40.38 
 
 
110 aa  73.9  0.0000000000008  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00012288  n/a   
 
 
-
 
NC_013411  GYMC61_1977  putative DNA-binding protein  40.38 
 
 
110 aa  73.6  0.0000000000008  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010718  Nther_1367  putative helix-turn-helix protein YlxM/p13 family protein  41.18 
 
 
115 aa  72.8  0.000000000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  decreased coverage  0.0000000000121359  normal  0.130704 
 
 
-
 
NC_011899  Hore_07280  putative helix-turn-helix protein YlxM/p13 family protein  43.69 
 
 
138 aa  72.4  0.000000000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  4.44175e-17  n/a   
 
 
-
 
NC_011898  Ccel_0708  putative helix-turn-helix protein YlxM/p13 family protein  36.21 
 
 
118 aa  72  0.000000000002  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000000725888  n/a   
 
 
-
 
NC_009487  SaurJH9_1295  putative DNA-binding protein  39.81 
 
 
110 aa  69.3  0.00000000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000113338  n/a   
 
 
-
 
NC_009632  SaurJH1_1320  putative DNA-binding protein  39.81 
 
 
110 aa  69.3  0.00000000002  Staphylococcus aureus subsp. aureus JH1  Bacteria  hitchhiker  0.00000787485  n/a   
 
 
-
 
NC_013216  Dtox_1195  putative DNA-binding protein  43.96 
 
 
121 aa  68.9  0.00000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.00566112  normal  0.0879522 
 
 
-
 
NC_009012  Cthe_0771  putative helix-turn-helix protein, YlxM/p13-like protein  47.3 
 
 
117 aa  68.9  0.00000000002  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00000112996  n/a   
 
 
-
 
NC_013171  Apre_1305  putative helix-turn-helix protein YlxM/p13 family protein  42.86 
 
 
107 aa  68.6  0.00000000003  Anaerococcus prevotii DSM 20548  Bacteria  unclonable  0.000000000161782  n/a   
 
 
-
 
NC_008532  STER_0914  putative DNA-binding protein  43.48 
 
 
110 aa  67  0.00000000009  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.00185411  n/a   
 
 
-
 
NC_002976  SERP0802  putative DNA-binding protein  39.81 
 
 
110 aa  67  0.00000000009  Staphylococcus epidermidis RP62A  Bacteria  normal  0.186415  n/a   
 
 
-
 
NC_004116  SAG0983  putative DNA-binding protein  41.3 
 
 
110 aa  66.2  0.0000000001  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.584872  n/a   
 
 
-
 
NC_012793  GWCH70_1086  putative helix-turn-helix protein YlxM/p13 family protein  44.05 
 
 
110 aa  66.6  0.0000000001  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000075195  n/a   
 
 
-
 
NC_010001  Cphy_2410  putative helix-turn-helix protein YlxM/p13 family protein  37.5 
 
 
126 aa  65.9  0.0000000002  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000167585  n/a   
 
 
-
 
NC_012034  Athe_0966  putative helix-turn-helix protein YlxM/p13 family protein  36.94 
 
 
116 aa  65.5  0.0000000002  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.000131133  n/a   
 
 
-
 
NC_007644  Moth_0965  putative helix-turn-helix protein, YlxM/p13-like  46.77 
 
 
122 aa  64.3  0.0000000005  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00000337599  normal 
 
 
-
 
NC_010320  Teth514_1714  putative DNA-binding protein  40.48 
 
 
117 aa  64.3  0.0000000005  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0000280165  n/a   
 
 
-
 
NC_010424  Daud_0654  putative DNA-binding protein  41.67 
 
 
122 aa  63.9  0.0000000008  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.00000927978  n/a   
 
 
-
 
NC_013205  Aaci_1350  putative helix-turn-helix protein YlxM/p13 family protein  33.68 
 
 
138 aa  63.5  0.0000000009  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.000485447  n/a   
 
 
-
 
NC_009513  Lreu_1156  putative DNA-binding protein  44.16 
 
 
113 aa  61.2  0.000000004  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.000000235308  n/a   
 
 
-
 
NC_008530  LGAS_0784  hypothetical protein  47.62 
 
 
113 aa  59.7  0.00000001  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000115289  hitchhiker  3.01315e-25 
 
 
-
 
NC_013515  Smon_1451  putative helix-turn-helix protein YlxM/p13 family protein  47.62 
 
 
108 aa  56.2  0.0000001  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013517  Sterm_1861  putative helix-turn-helix protein YlxM/p13 family protein  45.45 
 
 
109 aa  55.1  0.0000003  Sebaldella termitidis ATCC 33386  Bacteria  unclonable  0.0000000000519848  n/a   
 
 
-
 
NC_007633  MCAP_0480  putative DNA-binding protein  43.84 
 
 
113 aa  53.1  0.000001  Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria  normal  0.0438504  n/a   
 
 
-
 
NC_006055  Mfl238  putative DNA-binding protein  38.18 
 
 
108 aa  53.1  0.000001  Mesoplasma florum L1  Bacteria  normal  n/a   
 
 
-
 
NC_011374  UUR10_0158  putative DNA-binding protein  40.54 
 
 
99 aa  53.1  0.000001  Ureaplasma urealyticum serovar 10 str. ATCC 33699  Bacteria  normal  0.123109  n/a   
 
 
-
 
NC_008531  LEUM_1562  hypothetical protein  40.85 
 
 
114 aa  51.2  0.000005  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0456  hypothetical protein  34.67 
 
 
104 aa  48.5  0.00003  Oenococcus oeni PSU-1  Bacteria  decreased coverage  0.00302471  n/a   
 
 
-
 
NC_013522  Taci_1419  putative helix-turn-helix protein YlxM/p13 family protein  34.34 
 
 
116 aa  47.8  0.00006  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  unclonable  0.00000000082912  n/a   
 
 
-
 
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