27 homologs were found in PanDaTox collection
for query gene Bpro_4220 on replicon NC_007948
Organism: Polaromonas sp. JS666



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007948  Bpro_4220  LuxR family transcriptional regulator  100 
 
 		 222 aa  445  1.0000000000000001e-124  Polaromonas sp. JS666  Bacteria  normal  0.848445  normal  1 
 
 
-
 
NC_010524  Lcho_4098  LuxR family transcriptional regulator  37.36 
 
 		 215 aa  94.4  1e-18  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000000762213 
 
 
-
 
NC_010581  Bind_1993  LuxR family transcriptional regulator  29.27 
 
 		 374 aa  58.9  0.00000006  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.389797  normal  0.0150442 
 
 
-
 
NC_008825  Mpe_A2412  hypothetical protein  28.41 
 
 		 377 aa  55.8  0.0000005  Methylibium petroleiphilum PM1  Bacteria  normal  0.390021  normal  1 
 
 
-
 
NC_010581  Bind_1992  LuxR family transcriptional regulator  28.57 
 
 		 377 aa  55.1  0.0000009  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  0.0260195 
 
 
-
 
NC_007948  Bpro_1379  LuxR family transcriptional regulator  27.57 
 
 		 385 aa  52.8  0.000004  Polaromonas sp. JS666  Bacteria  normal  1  normal  0.366472 
 
 
-
 
NC_007802  Jann_3545  LuxR family transcriptional regulator  29.01 
 
 		 394 aa  52.4  0.000006  Jannaschia sp. CCS1  Bacteria  normal  1  normal  0.851404 
 
 
-
 
NC_010511  M446_4474  LuxR family transcriptional regulator  28.57 
 
 		 398 aa  52  0.000008  Methylobacterium sp. 4-46  Bacteria  normal  1  hitchhiker  0.00194673 
 
 
-
 
NC_010581  Bind_1991  LuxR family transcriptional regulator  27.84 
 
 		 375 aa  47.8  0.0001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  decreased coverage  0.00358246 
 
 
-
 
NC_007974  Rmet_3907  putative transcriptional regulator  29.17 
 
 		 392 aa  45.8  0.0005  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.488237 
 
 
-
 
NC_003296  RS02602  putative transcription regulator protein  28.06 
 
 		 380 aa  45.8  0.0005  Ralstonia solanacearum GMI1000  Bacteria  normal  0.125932  normal  0.252722 
 
 
-
 
NC_012850  Rleg_2379  transcriptional regulator, LuxR family  28.08 
 
 		 377 aa  45.4  0.0006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.207918  decreased coverage  0.00252302 
 
 
-
 
NC_011894  Mnod_5178  transcriptional regulator, LuxR family  27.7 
 
 		 411 aa  45.4  0.0007  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_014158  Tpau_3507  two component transcriptional regulator, LuxR family  46.94 
 
 		 213 aa  44.3  0.001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.892641  n/a   
 
 
-
 
NC_009485  BBta_3777  LuxR family transcriptional regulator  26.67 
 
 		 377 aa  44.3  0.001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0201784  normal  1 
 
 
-
 
NC_013204  Elen_2114  transcriptional regulator, LuxR family  43.1 
 
 		 191 aa  44.3  0.001  Eggerthella lenta DSM 2243  Bacteria  unclonable  0.00000000451621  normal  0.459179 
 
 
-
 
NC_009439  Pmen_3129  transcriptional regulator MalT  27.23 
 
 		 914 aa  43.9  0.002  Pseudomonas mendocina ymp  Bacteria  normal  0.0535917  decreased coverage  0.00386402 
 
 
-
 
NC_007494  RSP_3324  LuxR family transcriptional regulator  43.64 
 
 		 314 aa  42.7  0.004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012857  Rpic12D_4350  transcriptional regulator, LuxR family  29.32 
 
 		 417 aa  42.4  0.005  Ralstonia pickettii 12D  Bacteria  normal  1  normal  0.626304 
 
 
-
 
NC_010505  Mrad2831_1423  LuxR family transcriptional regulator  27.03 
 
 		 227 aa  42.7  0.005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  hitchhiker  0.0000143739 
 
 
-
 
NC_010678  Rpic_4240  transcriptional regulator, LuxR family  29.32 
 
 		 417 aa  42.4  0.005  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009050  Rsph17029_4049  response regulator receiver protein  34.74 
 
 		 275 aa  42.7  0.005  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00251355  normal  1 
 
 
-
 
NC_007347  Reut_A0027  LuxR family transcriptional regulator  24.08 
 
 		 381 aa  42.4  0.006  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  38.33 
 
 		 211 aa  42  0.007  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_0609  response regulator receiver protein  43.86 
 
 		 218 aa  42  0.007  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_1894  putative response regulator receiver protein  45.24 
 
 		 204 aa  42  0.008  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.761861  normal  0.0769356 
 
 
-
 
NC_007348  Reut_B3562  regulatory protein, LuxR  27.6 
 
 		 393 aa  41.6  0.01  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
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