More than 300 homologs were found in PanDaTox collection
for query gene Bphyt_0629 on replicon NC_010681
Organism: Burkholderia phytofirmans PsJN



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010681  Bphyt_0629  two component transcriptional regulator, LuxR family  100 
 
 
230 aa  468  1.0000000000000001e-131  Burkholderia phytofirmans PsJN  Bacteria  normal  0.452847  normal  0.285643 
 
 
-
 
NC_007951  Bxe_A4071  two component LuxR family transcriptional regulator  74.65 
 
 
221 aa  327  1.0000000000000001e-88  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0354  two component LuxR family transcriptional regulator  56.94 
 
 
217 aa  237  1e-61  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5845  LuxR response regulator receiver  40.65 
 
 
214 aa  153  2e-36  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2872  two component LuxR family transcriptional regulator  37.21 
 
 
235 aa  140  1.9999999999999998e-32  Burkholderia phymatum STM815  Bacteria  normal  0.891055  hitchhiker  0.000000000201971 
 
 
-
 
NC_011071  Smal_0155  two component transcriptional regulator, LuxR family  38.57 
 
 
212 aa  139  3.9999999999999997e-32  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1294  LuxR response regulator receiver  37.96 
 
 
220 aa  138  8.999999999999999e-32  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.721447 
 
 
-
 
NC_010515  Bcenmc03_4224  two component LuxR family transcriptional regulator  37.85 
 
 
231 aa  136  2e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.322534  normal  0.434129 
 
 
-
 
NC_007651  BTH_I2674  DNA-binding response regulator  36.28 
 
 
210 aa  135  5e-31  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3677  two component transcriptional regulator, LuxR family  35.81 
 
 
229 aa  135  6.0000000000000005e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0102182  hitchhiker  0.0000000000674126 
 
 
-
 
NC_007951  Bxe_A0280  two component LuxR family transcriptional regulator  35.81 
 
 
229 aa  135  6.0000000000000005e-31  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.00188137 
 
 
-
 
NC_006348  BMA0879  DNA-binding response regulator  35.65 
 
 
210 aa  135  7.000000000000001e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  0.888299  n/a   
 
 
-
 
NC_009080  BMA10247_0685  capsular synthesis regulator component B  35.65 
 
 
210 aa  135  7.000000000000001e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  0.394747  n/a   
 
 
-
 
NC_007434  BURPS1710b_1797  DNA-binding response regulator  35.65 
 
 
210 aa  135  7.000000000000001e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1403  DNA-binding response regulator  35.65 
 
 
210 aa  135  7.000000000000001e-31  Burkholderia mallei SAVP1  Bacteria  normal  0.846273  n/a   
 
 
-
 
NC_008836  BMA10229_A0473  DNA-binding response regulator  35.65 
 
 
210 aa  135  7.000000000000001e-31  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1640  capsular synthesis regulator component B  35.65 
 
 
210 aa  135  7.000000000000001e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0841891  n/a   
 
 
-
 
NC_009074  BURPS668_1618  DNA-binding response regulator  35.65 
 
 
210 aa  134  8e-31  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0142  DNA-binding response regulator  35.24 
 
 
220 aa  132  6e-30  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1634  DNA-binding response regulator  34.56 
 
 
230 aa  132  6.999999999999999e-30  Burkholderia pseudomallei 1710b  Bacteria  normal  0.723228  n/a   
 
 
-
 
NC_012880  Dd703_1041  transcriptional regulator RcsB  34.27 
 
 
218 aa  132  6.999999999999999e-30  Dickeya dadantii Ech703  Bacteria  normal  0.140172  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0170  capsular synthesis regulator component B  34.56 
 
 
230 aa  132  6.999999999999999e-30  Burkholderia pseudomallei 1106a  Bacteria  normal  0.443347  n/a   
 
 
-
 
NC_007974  Rmet_4965  two component LuxR family transcriptional regulator  38.5 
 
 
214 aa  131  9e-30  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.122556 
 
 
-
 
NC_004347  SO_4444  capsular synthesis regulator component B, putative  34.26 
 
 
212 aa  131  1.0000000000000001e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_3267  transcriptional regulator RcsB  34.76 
 
 
216 aa  131  1.0000000000000001e-29  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00059602  normal 
 
 
-
 
NC_012912  Dd1591_3017  transcriptional regulator RcsB  33.33 
 
 
216 aa  130  2.0000000000000002e-29  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0258  LuxR response regulator receiver  36.11 
 
 
230 aa  129  5.0000000000000004e-29  Burkholderia pseudomallei 668  Bacteria  normal  0.752946  n/a   
 
 
-
 
NC_007348  Reut_B3619  LuxR response regulator receiver  36.24 
 
 
219 aa  129  5.0000000000000004e-29  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1630  DNA-binding response regulator  33.65 
 
 
220 aa  128  6e-29  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0322132  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0161  LuxR family DNA-binding response regulator  33.65 
 
 
220 aa  128  8.000000000000001e-29  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1107  transcriptional regulator RcsB  33.81 
 
 
216 aa  127  1.0000000000000001e-28  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3209  transcriptional regulator RcsB  33.81 
 
 
216 aa  127  1.0000000000000001e-28  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_16350  putative two-component response regulator  37.09 
 
 
213 aa  127  1.0000000000000001e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A1307  transcriptional regulator RcsB  33.8 
 
 
217 aa  127  2.0000000000000002e-28  Yersinia pestis Angola  Bacteria  normal  0.0162714  normal 
 
 
-
 
NC_009656  PSPA7_1421  putative two-component response regulator  36.7 
 
 
213 aa  127  2.0000000000000002e-28  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2764  transcriptional regulator RcsB  33.8 
 
 
217 aa  127  2.0000000000000002e-28  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.408225  n/a   
 
 
-
 
NC_010465  YPK_2843  transcriptional regulator RcsB  33.8 
 
 
217 aa  127  2.0000000000000002e-28  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0289  two component transcriptional regulator, LuxR family  32.87 
 
 
212 aa  126  3e-28  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A0187  LuxR response regulator receiver  34.76 
 
 
220 aa  126  3e-28  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1441  two component transcriptional regulator, LuxR family  34.29 
 
 
216 aa  125  5e-28  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000259515  n/a   
 
 
-
 
NC_011083  SeHA_C2510  transcriptional regulator RcsB  34.29 
 
 
216 aa  125  5e-28  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.731723  normal  0.0675268 
 
 
-
 
NC_009801  EcE24377A_2517  transcriptional regulator RcsB  34.29 
 
 
216 aa  125  5e-28  Escherichia coli E24377A  Bacteria  hitchhiker  0.0000000600529  n/a   
 
 
-
 
NC_011080  SNSL254_A2455  transcriptional regulator RcsB  34.29 
 
 
216 aa  125  5e-28  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.0427332  normal  0.0831575 
 
 
-
 
NC_011353  ECH74115_3357  transcriptional regulator RcsB  34.29 
 
 
216 aa  125  5e-28  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000561339  normal 
 
 
-
 
NC_010498  EcSMS35_2366  transcriptional regulator RcsB  34.29 
 
 
216 aa  125  5e-28  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000282288  normal 
 
 
-
 
NC_011094  SeSA_A2496  transcriptional regulator RcsB  34.29 
 
 
216 aa  125  5e-28  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.424983  normal 
 
 
-
 
NC_010468  EcolC_1433  transcriptional regulator RcsB  34.29 
 
 
216 aa  125  5e-28  Escherichia coli ATCC 8739  Bacteria  normal  0.0102563  hitchhiker  0.00285537 
 
 
-
 
NC_011149  SeAg_B2406  transcriptional regulator RcsB  34.29 
 
 
216 aa  125  5e-28  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  decreased coverage  0.00000000625449  n/a   
 
 
-
 
NC_011205  SeD_A2614  transcriptional regulator RcsB  34.29 
 
 
216 aa  125  5e-28  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.588596 
 
 
-
 
NC_010658  SbBS512_E0721  transcriptional regulator RcsB  34.29 
 
 
228 aa  125  8.000000000000001e-28  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.000245188  n/a   
 
 
-
 
NC_009800  EcHS_A2357  transcriptional regulator RcsB  34.29 
 
 
228 aa  125  8.000000000000001e-28  Escherichia coli HS  Bacteria  hitchhiker  0.00000000398144  n/a   
 
 
-
 
NC_009436  Ent638_2797  transcriptional regulator RcsB  33.81 
 
 
216 aa  124  9e-28  Enterobacter sp. 638  Bacteria  hitchhiker  0.000000283918  normal 
 
 
-
 
NC_010515  Bcenmc03_4702  two component LuxR family transcriptional regulator  35.51 
 
 
213 aa  124  9e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.121015 
 
 
-
 
NC_010552  BamMC406_3287  two component LuxR family transcriptional regulator  37.2 
 
 
223 aa  124  1e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.404787 
 
 
-
 
NC_010515  Bcenmc03_4225  two component LuxR family transcriptional regulator  35.48 
 
 
241 aa  124  1e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.107538  normal  0.322545 
 
 
-
 
NC_010515  Bcenmc03_4641  two component LuxR family transcriptional regulator  36.49 
 
 
213 aa  124  2e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.169112  normal  0.068024 
 
 
-
 
NC_004578  PSPTO_1484  DNA-binding response regulator, LuxR family  37.32 
 
 
208 aa  122  6e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_3273  two component transcriptional regulator, LuxR family  37.09 
 
 
215 aa  121  8e-27  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3041  two component LuxR family transcriptional regulator  34.56 
 
 
215 aa  120  9.999999999999999e-27  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.000032992  normal  0.146168 
 
 
-
 
NC_007511  Bcep18194_B2880  two component LuxR family transcriptional regulator  34.95 
 
 
224 aa  120  9.999999999999999e-27  Burkholderia sp. 383  Bacteria  normal  0.345086  normal 
 
 
-
 
NC_010002  Daci_3936  two component LuxR family transcriptional regulator  36.53 
 
 
231 aa  120  1.9999999999999998e-26  Delftia acidovorans SPH-1  Bacteria  normal  0.426907  normal  0.200888 
 
 
-
 
NC_007974  Rmet_3939  two component transcriptional regulator  35 
 
 
300 aa  119  3.9999999999999996e-26  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.555587 
 
 
-
 
NC_011071  Smal_0283  two component transcriptional regulator, LuxR family  36.23 
 
 
208 aa  119  4.9999999999999996e-26  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.393471  normal  0.0532877 
 
 
-
 
NC_007347  Reut_A1693  LuxR response regulator receiver  35.05 
 
 
214 aa  118  7.999999999999999e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.478316  n/a   
 
 
-
 
NC_003295  RSc3388  two-component response regulator transcription regulator protein  35.38 
 
 
215 aa  117  9.999999999999999e-26  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0201761  normal 
 
 
-
 
NC_010682  Rpic_3595  two component transcriptional regulator, LuxR family  36.15 
 
 
215 aa  118  9.999999999999999e-26  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0198  DNA-binding response regulator  33.64 
 
 
230 aa  116  1.9999999999999998e-25  Burkholderia thailandensis E264  Bacteria  normal  0.292201  n/a   
 
 
-
 
NC_009512  Pput_3752  two component LuxR family transcriptional regulator  33.94 
 
 
215 aa  115  6e-25  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3938  two component LuxR family transcriptional regulator  32.52 
 
 
218 aa  115  6.9999999999999995e-25  Delftia acidovorans SPH-1  Bacteria  normal  0.189042  normal  0.262256 
 
 
-
 
NC_011071  Smal_0735  two component transcriptional regulator, LuxR family  35.07 
 
 
213 aa  114  1.0000000000000001e-24  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_11120  putative response regulator  34.47 
 
 
214 aa  112  4.0000000000000004e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1137  two component LuxR family transcriptional regulator  32.71 
 
 
214 aa  111  1.0000000000000001e-23  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3986  two component LuxR family transcriptional regulator  34.26 
 
 
217 aa  110  2.0000000000000002e-23  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.039666 
 
 
-
 
NC_010086  Bmul_5217  two component LuxR family transcriptional regulator  33.98 
 
 
224 aa  109  4.0000000000000004e-23  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5152  two component LuxR family transcriptional regulator  33.33 
 
 
219 aa  108  7.000000000000001e-23  Burkholderia ambifaria AMMD  Bacteria  normal  0.535465  normal 
 
 
-
 
NC_010682  Rpic_3357  two component transcriptional regulator, LuxR family  30.73 
 
 
222 aa  108  8.000000000000001e-23  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C1157  two component LuxR family transcriptional regulator  32.86 
 
 
215 aa  108  1e-22  Burkholderia xenovorans LB400  Bacteria  normal  0.505737  normal 
 
 
-
 
NC_009656  PSPA7_1021  putative response regulator  35.27 
 
 
214 aa  107  1e-22  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4069  two component LuxR family transcriptional regulator  33.05 
 
 
225 aa  107  2e-22  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_3010  two component transcriptional regulator, LuxR family  30.28 
 
 
222 aa  105  5e-22  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc3078  response regulator transcription regulator protein  31.94 
 
 
222 aa  105  7e-22  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0498276  normal 
 
 
-
 
NC_007348  Reut_B3667  two component LuxR family transcriptional regulator  34.58 
 
 
215 aa  105  8e-22  Ralstonia eutropha JMP134  Bacteria  normal  0.849529  n/a   
 
 
-
 
NC_010002  Daci_3081  two component LuxR family transcriptional regulator  30.56 
 
 
217 aa  104  9e-22  Delftia acidovorans SPH-1  Bacteria  normal  0.450994  normal  0.856151 
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  32.52 
 
 
215 aa  104  1e-21  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  32.52 
 
 
215 aa  104  1e-21  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  32.52 
 
 
215 aa  104  1e-21  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  31.07 
 
 
215 aa  103  2e-21  Burkholderia phymatum STM815  Bacteria  normal  normal  0.976007 
 
 
-
 
NC_008463  PA14_59770  putative two component response regulator  33.18 
 
 
231 aa  102  4e-21  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000000000114482  hitchhiker  1.6476100000000001e-18 
 
 
-
 
NC_010681  Bphyt_0631  two component transcriptional regulator, LuxR family  34.23 
 
 
214 aa  102  5e-21  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.151672 
 
 
-
 
NC_007951  Bxe_A4070  two component LuxR family transcriptional regulator  31.94 
 
 
229 aa  102  5e-21  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  30.52 
 
 
215 aa  101  9e-21  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal 
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  30.37 
 
 
215 aa  101  9e-21  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal 
 
 
-
 
NC_010622  Bphy_0356  two component LuxR family transcriptional regulator  32.16 
 
 
223 aa  101  9e-21  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  30.37 
 
 
215 aa  101  9e-21  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.329832 
 
 
-
 
NC_007650  BTH_II1570  LuxR family DNA-binding response regulator  30.37 
 
 
215 aa  101  1e-20  Burkholderia thailandensis E264  Bacteria  normal  0.17909  n/a   
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  29.91 
 
 
215 aa  100  2e-20  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_007650  BTH_II1247  LuxR family DNA-binding response regulator  32.04 
 
 
215 aa  100  2e-20  Burkholderia thailandensis E264  Bacteria  normal  0.32702  n/a   
 
 
-
 
NC_010084  Bmul_0030  two component LuxR family transcriptional regulator  33.33 
 
 
229 aa  100  2e-20  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_3595  two component LuxR family transcriptional regulator  31.07 
 
 
215 aa  100  2e-20  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  29.91 
 
 
215 aa  100  2e-20  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal 
 
 
-
 
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