More than 300 homologs were found in PanDaTox collection
for query gene Bphy_5778 on replicon NC_010625
Organism: Burkholderia phymatum STM815



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010625  Bphy_5778  cyclic nucleotide-binding protein  100 
 
 		 353 aa  708    Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.714206 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  38.05 
 
 		 221 aa  100  5e-20  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_1049  cyclic nucleotide-binding protein  39.66 
 
 		 210 aa  96.7  6e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.085615  n/a   
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  37.44 
 
 		 209 aa  95.9  9e-19  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  36.08 
 
 		 227 aa  93.6  5e-18  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_010511  M446_1668  cyclic nucleotide-binding protein  37.07 
 
 		 209 aa  90.9  3e-17  Methylobacterium sp. 4-46  Bacteria  normal  0.796246  normal  0.637535 
 
 
-
 
NC_010172  Mext_0576  cyclic nucleotide-binding  36.75 
 
 		 211 aa  90.5  4e-17  Methylobacterium extorquens PA1  Bacteria  normal  0.315995  normal  1 
 
 
-
 
NC_010725  Mpop_0550  cyclic nucleotide-binding protein  36.75 
 
 		 211 aa  89.4  9e-17  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.844847 
 
 
-
 
NC_011757  Mchl_0586  cyclic nucleotide-binding protein  35.9 
 
 		 211 aa  89  1e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_2689  cyclic nucleotide-binding protein  38.71 
 
 		 208 aa  89.4  1e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  decreased coverage  0.0072891  normal  0.636365 
 
 
-
 
NC_009485  BBta_7109  cyclic nucleotide-binding protein  37.72 
 
 		 222 aa  86.7  5e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.517974  normal  1 
 
 
-
 
NC_007406  Nwi_0560  cyclic nucleotide-binding  35.04 
 
 		 275 aa  86.7  5e-16  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010508  Bcenmc03_2243  two component LuxR family transcriptional regulator  31.55 
 
 		 278 aa  87  5e-16  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000421268  normal  1 
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  32.29 
 
 		 210 aa  87  5e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  29.91 
 
 		 227 aa  85.9  9e-16  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008060  Bcen_1607  two component LuxR family transcriptional regulator  31.07 
 
 		 278 aa  85.1  0.000000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0202468  n/a   
 
 
-
 
NC_008542  Bcen2424_2219  two component LuxR family transcriptional regulator  31.07 
 
 		 278 aa  85.1  0.000000000000002  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00895129  n/a   
 
 
-
 
NC_007778  RPB_1692  cyclic nucleotide-binding domain-containing protein  37.17 
 
 		 224 aa  83.6  0.000000000000005  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007510  Bcep18194_A5547  two component LuxR family transcriptional regulator  31.34 
 
 		 278 aa  82  0.00000000000001  Burkholderia sp. 383  Bacteria  hitchhiker  0.0000595114  normal  0.307303 
 
 
-
 
NC_011004  Rpal_1913  cyclic nucleotide-binding protein  34.11 
 
 		 224 aa  82  0.00000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007958  RPD_3601  cyclic nucleotide-binding  34.51 
 
 		 224 aa  80.9  0.00000000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0690816  normal  0.803864 
 
 
-
 
NC_003295  RSc1185  transcription regulator protein  32.71 
 
 		 222 aa  80.1  0.00000000000005  Ralstonia solanacearum GMI1000  Bacteria  normal  0.124825  normal  0.600184 
 
 
-
 
NC_009523  RoseRS_4323  two component LuxR family transcriptional regulator  31.08 
 
 		 246 aa  79.7  0.00000000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.239635  normal  0.317944 
 
 
-
 
NC_012856  Rpic12D_1120  two component transcriptional regulator, LuxR family  32.7 
 
 		 219 aa  79.7  0.00000000000007  Ralstonia pickettii 12D  Bacteria  normal  0.0994252  normal  0.118956 
 
 
-
 
NC_010551  BamMC406_2136  two component LuxR family transcriptional regulator  31.03 
 
 		 276 aa  79.7  0.00000000000007  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.00080353  normal  0.948234 
 
 
-
 
NC_008390  Bamb_2257  two component LuxR family transcriptional regulator  31.03 
 
 		 276 aa  79.7  0.00000000000007  Burkholderia ambifaria AMMD  Bacteria  normal  0.0303794  n/a   
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  32.16 
 
 		 219 aa  79.7  0.00000000000008  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_007925  RPC_2203  cyclic nucleotide-binding domain-containing protein  35.34 
 
 		 247 aa  79.3  0.00000000000009  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.24757  normal  1 
 
 
-
 
NC_007964  Nham_0652  cyclic nucleotide-binding domain-containing protein  32.48 
 
 		 222 aa  79.3  0.00000000000009  Nitrobacter hamburgensis X14  Bacteria  normal  0.586591  n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  32.48 
 
 		 224 aa  79  0.0000000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010625  Bphy_6192  two component LuxR family transcriptional regulator  33.33 
 
 		 231 aa  79  0.0000000000001  Burkholderia phymatum STM815  Bacteria  normal  0.446565  normal  0.0472092 
 
 
-
 
NC_009428  Rsph17025_1676  two component LuxR family transcriptional regulator  32.32 
 
 		 210 aa  79  0.0000000000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.123322  normal  1 
 
 
-
 
NC_010084  Bmul_1058  two component LuxR family transcriptional regulator  30.28 
 
 		 278 aa  78.2  0.0000000000002  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.0000154316  normal  1 
 
 
-
 
NC_010682  Rpic_1028  two component transcriptional regulator, LuxR family  32.71 
 
 		 222 aa  78.2  0.0000000000002  Ralstonia pickettii 12J  Bacteria  normal  0.146412  normal  0.260968 
 
 
-
 
NC_009621  Smed_5114  two component LuxR family transcriptional regulator  30.66 
 
 		 230 aa  77.8  0.0000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  1  decreased coverage  0.00554548 
 
 
-
 
NC_009767  Rcas_4428  two component LuxR family transcriptional regulator  32.89 
 
 		 231 aa  76.3  0.0000000000007  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011662  Tmz1t_3355  two component transcriptional regulator, LuxR family  32 
 
 		 208 aa  75.9  0.000000000001  Thauera sp. MZ1T  Bacteria  normal  0.687232  n/a   
 
 
-
 
NC_009049  Rsph17029_1723  two component LuxR family transcriptional regulator  32.9 
 
 		 240 aa  75.9  0.000000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007951  Bxe_A3176  two component LuxR family transcriptional regulator  30.14 
 
 		 292 aa  75.5  0.000000000001  Burkholderia xenovorans LB400  Bacteria  normal  0.0570221  normal  0.472976 
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  33.33 
 
 		 209 aa  75.1  0.000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_007493  RSP_0087  two component transcriptional regulator, LuxR  32.9 
 
 		 210 aa  75.1  0.000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.197031  n/a   
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  33.11 
 
 		 216 aa  74.3  0.000000000003  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010622  Bphy_1975  two component LuxR family transcriptional regulator  34.3 
 
 		 293 aa  74.3  0.000000000003  Burkholderia phymatum STM815  Bacteria  normal  0.0150451  normal  1 
 
 
-
 
NC_008391  Bamb_4255  LuxR family transcriptional regulator  32.44 
 
 		 227 aa  73.9  0.000000000003  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.0102406 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  31.51 
 
 		 224 aa  73.9  0.000000000004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_010552  BamMC406_4781  LuxR family transcriptional regulator  32.44 
 
 		 227 aa  73.9  0.000000000004  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0502492  normal  1 
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  32.59 
 
 		 209 aa  73.6  0.000000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  28.25 
 
 		 227 aa  72  0.00000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  37.67 
 
 		 228 aa  72  0.00000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008044  TM1040_0828  two component LuxR family transcriptional regulator  28.89 
 
 		 204 aa  72.4  0.00000000001  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00513824  normal  0.360671 
 
 
-
 
NC_012856  Rpic12D_1738  two component transcriptional regulator, LuxR family  28.76 
 
 		 219 aa  71.6  0.00000000002  Ralstonia pickettii 12D  Bacteria  normal  0.0459515  normal  0.949758 
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  30.72 
 
 		 209 aa  71.2  0.00000000002  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  33.76 
 
 		 224 aa  71.6  0.00000000002  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  29.95 
 
 		 224 aa  71.2  0.00000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  28.97 
 
 		 221 aa  71.2  0.00000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_3851  two component LuxR family transcriptional regulator  28.82 
 
 		 227 aa  70.9  0.00000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007908  Rfer_2039  two component LuxR family transcriptional regulator  30.63 
 
 		 212 aa  70.9  0.00000000003  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_010682  Rpic_2046  two component transcriptional regulator, LuxR family  28.33 
 
 		 219 aa  71.2  0.00000000003  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  33.1 
 
 		 209 aa  70.9  0.00000000004  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  30.98 
 
 		 230 aa  70.5  0.00000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010681  Bphyt_1379  two component transcriptional regulator, LuxR family  29.38 
 
 		 292 aa  70.1  0.00000000005  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0210202  hitchhiker  0.00446461 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  29.03 
 
 		 220 aa  70.5  0.00000000005  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  29.05 
 
 		 218 aa  69.3  0.00000000009  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  29.05 
 
 		 218 aa  69.3  0.00000000009  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal  1 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  30.04 
 
 		 221 aa  68.9  0.0000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  29.41 
 
 		 224 aa  68.9  0.0000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008254  Meso_0596  two component LuxR family transcriptional regulator  37.12 
 
 		 228 aa  68.6  0.0000000001  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  30.97 
 
 		 226 aa  68.9  0.0000000001  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  29.68 
 
 		 220 aa  68.9  0.0000000001  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_008781  Pnap_0105  two component LuxR family transcriptional regulator  29.65 
 
 		 219 aa  68.6  0.0000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.0920509 
 
 
-
 
NC_011830  Dhaf_2789  two component transcriptional regulator, LuxR family  27.98 
 
 		 212 aa  68.2  0.0000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.246733  n/a   
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  29.78 
 
 		 217 aa  68.2  0.0000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  30.28 
 
 		 220 aa  68.2  0.0000000002  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_007973  Rmet_2087  two component LuxR family transcriptional regulator  31.25 
 
 		 217 aa  68.6  0.0000000002  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.332036 
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  28.7 
 
 		 227 aa  68.2  0.0000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  29.24 
 
 		 216 aa  68.6  0.0000000002  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  30.14 
 
 		 220 aa  68.2  0.0000000002  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  30.14 
 
 		 220 aa  68.6  0.0000000002  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_009430  Rsph17025_4179  hypothetical protein  29.07 
 
 		 232 aa  68.2  0.0000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.365276 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  28.97 
 
 		 221 aa  68.2  0.0000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_009523  RoseRS_4258  two component LuxR family transcriptional regulator  32.02 
 
 		 216 aa  67.8  0.0000000003  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  30.28 
 
 		 220 aa  67.4  0.0000000003  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009430  Rsph17025_4184  hypothetical protein  27.66 
 
 		 207 aa  67.8  0.0000000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.400045  normal  0.380291 
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  31.29 
 
 		 211 aa  67.8  0.0000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  27.52 
 
 		 212 aa  67.8  0.0000000003  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  28.38 
 
 		 252 aa  67.8  0.0000000003  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  32.05 
 
 		 224 aa  67  0.0000000004  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  32.05 
 
 		 224 aa  67  0.0000000004  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  32.69 
 
 		 224 aa  67  0.0000000004  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  31.05 
 
 		 220 aa  67.4  0.0000000004  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_012857  Rpic12D_3767  two component transcriptional regulator, LuxR family  34.23 
 
 		 303 aa  67.4  0.0000000004  Ralstonia pickettii 12D  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007434  BURPS1710b_1471  DNA-binding response regulator  28.3 
 
 		 363 aa  67.4  0.0000000004  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.0000000100474  n/a   
 
 
-
 
NC_010678  Rpic_4844  two component transcriptional regulator, LuxR family  34.23 
 
 		 303 aa  67.4  0.0000000004  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  31 
 
 		 219 aa  67.4  0.0000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  29.49 
 
 		 216 aa  67  0.0000000005  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  31.76 
 
 		 212 aa  67  0.0000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_009074  BURPS668_1325  putative DNA-binding response regulator  27.83 
 
 		 279 aa  67  0.0000000005  Burkholderia pseudomallei 668  Bacteria  normal  0.0852238  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  29.82 
 
 		 220 aa  66.6  0.0000000005  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  29.82 
 
 		 220 aa  66.6  0.0000000005  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_008781  Pnap_2689  two component LuxR family transcriptional regulator  30.97 
 
 		 224 aa  67  0.0000000005  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.270095  normal  0.632538 
 
 
-
 
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