177 homologs were found in PanDaTox collection
for query gene Bind_3228 on replicon NC_010581
Organism: Beijerinckia indica subsp. indica ATCC 9039



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010581  Bind_3228  3-demethylubiquinone-9 3-methyltransferase  100 
 
 
173 aa  358  3e-98  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4782  3-demethylubiquinone-9 3-methyltransferase  64.24 
 
 
163 aa  207  5e-53  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3112  hypothetical protein  63.51 
 
 
158 aa  196  1.0000000000000001e-49  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0318978  n/a   
 
 
-
 
NC_009050  Rsph17029_3841  3-demethylubiquinone-9 3-methyltransferase  63.51 
 
 
158 aa  195  2.0000000000000003e-49  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0119527  normal 
 
 
-
 
NC_007948  Bpro_1399  3-demethylubiquinone-9 3-methyltransferase  59.06 
 
 
165 aa  182  2.0000000000000003e-45  Polaromonas sp. JS666  Bacteria  normal  normal  0.3347 
 
 
-
 
NC_008048  Sala_0011  3-demethylubiquinone-9 3-methyltransferase  59.06 
 
 
167 aa  181  3e-45  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.448662  normal  0.0489572 
 
 
-
 
NC_009483  Gura_0848  3-demethylubiquinone-9 3-methyltransferase  57.72 
 
 
161 aa  181  7e-45  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000136676  n/a   
 
 
-
 
NC_008781  Pnap_4028  3-demethylubiquinone-9 3-methyltransferase  55.97 
 
 
176 aa  179  2e-44  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.636645 
 
 
-
 
NC_003296  RS03882  hypothetical protein  59.06 
 
 
165 aa  178  2.9999999999999997e-44  Ralstonia solanacearum GMI1000  Bacteria  normal  0.279037  normal  0.767846 
 
 
-
 
NC_007964  Nham_0783  3-demethylubiquinone-9 3-methyltransferase  58.39 
 
 
166 aa  178  2.9999999999999997e-44  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_3848  putative 3-demethylubiquinone-9 3-methyltransferase  58.71 
 
 
161 aa  178  2.9999999999999997e-44  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.52304 
 
 
-
 
NC_012792  Vapar_5736  3-demethylubiquinone-9 3-methyltransferase  57.72 
 
 
159 aa  177  4.999999999999999e-44  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2888  3-demethylubiquinone-9 3-methyltransferase  60 
 
 
165 aa  177  5.999999999999999e-44  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.577012  n/a   
 
 
-
 
NC_002939  GSU2437  hypothetical protein  57.72 
 
 
161 aa  176  2e-43  Geobacter sulfurreducens PCA  Bacteria  hitchhiker  0.00410034  n/a   
 
 
-
 
NC_010814  Glov_1008  3-demethylubiquinone-9 3-methyltransferase  59.06 
 
 
161 aa  176  2e-43  Geobacter lovleyi SZ  Bacteria  normal  0.214378  n/a   
 
 
-
 
NC_011146  Gbem_1925  3-demethylubiquinone-9 3-methyltransferase  57.05 
 
 
162 aa  176  2e-43  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00859157  n/a   
 
 
-
 
NC_007517  Gmet_2483  3-demethylubiquinone-9 3-methyltransferase  57.72 
 
 
161 aa  175  3e-43  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000913491  normal 
 
 
-
 
NC_008825  Mpe_A1462  hypothetical protein  57.05 
 
 
159 aa  175  3e-43  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00432951  normal  0.76996 
 
 
-
 
NC_009429  Rsph17025_3630  hypothetical protein  56.96 
 
 
165 aa  175  3e-43  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0256913  normal 
 
 
-
 
NC_011992  Dtpsy_1607  3-demethylubiquinone-9 3-methyltransferase  57.05 
 
 
161 aa  175  3e-43  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2877  3-demethylubiquinone-9 3-methyltransferase  53.5 
 
 
164 aa  174  4e-43  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4637  3-demethylubiquinone-9 3-methyltransferase  56.38 
 
 
159 aa  174  5e-43  Ralstonia eutropha JMP134  Bacteria  normal  0.874058  n/a   
 
 
-
 
NC_010510  Mrad2831_6218  3-demethylubiquinone-9 3-methyltransferase  55.77 
 
 
166 aa  174  6e-43  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.701967  normal  0.334092 
 
 
-
 
NC_010803  Clim_0594  3-demethylubiquinone-9 3-methyltransferase  57.05 
 
 
161 aa  174  7e-43  Chlorobium limicola DSM 245  Bacteria  normal  0.382309  n/a   
 
 
-
 
NC_007908  Rfer_4108  3-demethylubiquinone-9 3-methyltransferase  54.14 
 
 
160 aa  174  7e-43  Rhodoferax ferrireducens T118  Bacteria  normal  0.105651  n/a   
 
 
-
 
NC_012918  GM21_2295  3-demethylubiquinone-9 3-methyltransferase  55.7 
 
 
162 aa  173  9.999999999999999e-43  Geobacter sp. M21  Bacteria  n/a    normal  0.0311325 
 
 
-
 
NC_009620  Smed_4431  3-demethylubiquinone-9 3-methyltransferase  55.7 
 
 
161 aa  173  9.999999999999999e-43  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2215  3-demethylubiquinone-9 3-methyltransferase  55.41 
 
 
159 aa  172  1.9999999999999998e-42  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_012852  Rleg_6022  3-demethylubiquinone-9 3-methyltransferase  56.38 
 
 
157 aa  172  2.9999999999999996e-42  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2956  3-demethylubiquinone-9 3-methyltransferase  57.05 
 
 
159 aa  172  2.9999999999999996e-42  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013757  Gobs_3284  3-demethylubiquinone-9 3-methyltransferase  54.3 
 
 
159 aa  171  3.9999999999999995e-42  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.313137  n/a   
 
 
-
 
NC_011004  Rpal_4903  3-demethylubiquinone-9 3-methyltransferase  53.85 
 
 
159 aa  171  6.999999999999999e-42  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.517944  n/a   
 
 
-
 
NC_002947  PP_3629  3-demethylubiquinone-9 3-methyltransferase  54.3 
 
 
159 aa  169  1e-41  Pseudomonas putida KT2440  Bacteria  normal  0.481282  normal 
 
 
-
 
NC_010678  Rpic_3867  3-demethylubiquinone-9 3-methyltransferase  55.7 
 
 
159 aa  170  1e-41  Ralstonia pickettii 12J  Bacteria  normal  normal  0.44427 
 
 
-
 
NC_012857  Rpic12D_3981  3-demethylubiquinone-9 3-methyltransferase  55.7 
 
 
159 aa  170  1e-41  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0500  3-demethylubiquinone-9 3-methyltransferase  57.05 
 
 
159 aa  168  3e-41  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4027  3-demethylubiquinone-9 3-methyltransferase  51.28 
 
 
167 aa  168  3e-41  Delftia acidovorans SPH-1  Bacteria  normal  0.560567  normal  0.360128 
 
 
-
 
NC_007492  Pfl01_2166  3-demethylubiquinone-9 3-methyltransferase  51.28 
 
 
170 aa  168  4e-41  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1669  3-demethylubiquinone-9 3-methyltransferase  53.02 
 
 
158 aa  167  5e-41  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2371  3-demethylubiquinone-9 3-methyltransferase  54.36 
 
 
169 aa  167  5e-41  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2287  3-demethylubiquinone-9 3-methyltransferase  54.36 
 
 
159 aa  167  5e-41  Pseudomonas putida GB-1  Bacteria  normal  0.719915  normal  0.308943 
 
 
-
 
NC_011891  A2cp1_3393  3-demethylubiquinone-9 3-methyltransferase  55.7 
 
 
157 aa  167  6e-41  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4223  3-demethylubiquinone-9 3-methyltransferase  52.29 
 
 
160 aa  167  6e-41  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.153142 
 
 
-
 
NC_008541  Arth_2204  3-demethylubiquinone-9 3-methyltransferase  52.26 
 
 
158 aa  167  7e-41  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00390727  n/a   
 
 
-
 
NC_013235  Namu_5222  3-demethylubiquinone-9 3-methyltransferase  55.71 
 
 
159 aa  167  7e-41  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1468  3-demethylubiquinone-9 3-methyltransferase  57.05 
 
 
179 aa  167  1e-40  Chelativorans sp. BNC1  Bacteria  normal  0.852155  n/a   
 
 
-
 
NC_012850  Rleg_2549  3-demethylubiquinone-9 3-methyltransferase  58.39 
 
 
157 aa  166  1e-40  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2104  3-demethylubiquinone-9 3-methyltransferase  54.36 
 
 
159 aa  166  1e-40  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4000  hypothetical protein  56.38 
 
 
159 aa  166  1e-40  Pseudomonas aeruginosa PA7  Bacteria  normal  0.656805  n/a   
 
 
-
 
NC_011145  AnaeK_3319  3-demethylubiquinone-9 3-methyltransferase  55.03 
 
 
157 aa  166  2e-40  Anaeromyxobacter sp. K  Bacteria  normal  0.850052  n/a   
 
 
-
 
NC_007614  Nmul_A2171  3-demethylubiquinone-9 3-methyltransferase  57.05 
 
 
178 aa  166  2e-40  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011892  Mnod_8415  3-demethylubiquinone-9 3-methyltransferase  56.38 
 
 
158 aa  165  2e-40  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011892  Mnod_8264  3-demethylubiquinone-9 3-methyltransferase  56.38 
 
 
158 aa  166  2e-40  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.677958  n/a   
 
 
-
 
NC_013132  Cpin_5547  3-demethylubiquinone-9 3-methyltransferase  50.66 
 
 
157 aa  165  2.9999999999999998e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.388463  normal 
 
 
-
 
NC_008463  PA14_28960  hypothetical protein  55.7 
 
 
159 aa  164  4e-40  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.295823  hitchhiker  0.0000347275 
 
 
-
 
NC_009485  BBta_2181  hypothetical protein  55.7 
 
 
159 aa  164  6.9999999999999995e-40  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0688  3-demethylubiquinone-9 3-methyltransferase  59.06 
 
 
159 aa  162  2.0000000000000002e-39  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.331587  normal 
 
 
-
 
NC_010725  Mpop_5293  3-demethylubiquinone-9 3-methyltransferase  50 
 
 
163 aa  162  2.0000000000000002e-39  Methylobacterium populi BJ001  Bacteria  normal  normal  0.405768 
 
 
-
 
NC_009719  Plav_3503  3-demethylubiquinone-9 3-methyltransferase  52.32 
 
 
156 aa  162  3e-39  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.936272  normal  0.391713 
 
 
-
 
NC_009921  Franean1_4069  3-demethylubiquinone-9 3-methyltransferase  54.55 
 
 
158 aa  160  9e-39  Frankia sp. EAN1pec  Bacteria  normal  0.0386051  normal 
 
 
-
 
NC_007777  Francci3_2914  3-demethylubiquinone-9 3-methyltransferase  48.7 
 
 
157 aa  160  1e-38  Frankia sp. CcI3  Bacteria  normal  0.269995  normal  0.303399 
 
 
-
 
NC_007760  Adeh_3194  3-demethylubiquinone-9 3-methyltransferase  53.69 
 
 
157 aa  159  2e-38  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3253  3-demethylubiquinone-9 3-methyltransferase  54.05 
 
 
157 aa  159  2e-38  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3648  3-demethylubiquinone-9 3-methyltransferase  53.69 
 
 
158 aa  158  4e-38  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00571731 
 
 
-
 
NC_010172  Mext_4751  3-demethylubiquinone-9 3-methyltransferase  48.41 
 
 
163 aa  157  6e-38  Methylobacterium extorquens PA1  Bacteria  normal  0.492463  normal 
 
 
-
 
NC_011369  Rleg2_2242  3-demethylubiquinone-9 3-methyltransferase  56.38 
 
 
157 aa  156  1e-37  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_5218  3-demethylubiquinone-9 3-methyltransferase  47.77 
 
 
163 aa  155  3e-37  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.57066  normal  0.0284682 
 
 
-
 
NC_010571  Oter_2255  3-demethylubiquinone-9 3-methyltransferase  51.01 
 
 
173 aa  155  4e-37  Opitutus terrae PB90-1  Bacteria  normal  0.604126  normal  0.0160885 
 
 
-
 
NC_011894  Mnod_0738  3-demethylubiquinone-9 3-methyltransferase  50.99 
 
 
153 aa  155  4e-37  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.459574  n/a   
 
 
-
 
NC_007951  Bxe_A3278  putative 3-demethylubiquinone-93- methyltransferase protein  49.01 
 
 
156 aa  153  9e-37  Burkholderia xenovorans LB400  Bacteria  normal  0.278374  normal  0.25029 
 
 
-
 
NC_009511  Swit_4586  3-demethylubiquinone-9 3-methyltransferase  50.33 
 
 
156 aa  154  9e-37  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA2848  hypothetical protein  48.45 
 
 
166 aa  153  1e-36  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0064  DNA binding protein  47.8 
 
 
166 aa  153  1e-36  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3172  3-demethylubiquinone-9 3-methyltransferase  48.41 
 
 
166 aa  153  1e-36  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3424  3-demethylubiquinone-9 3-methyltransferase family protein  48.45 
 
 
166 aa  153  1e-36  Burkholderia mallei SAVP1  Bacteria  normal  0.85582  n/a   
 
 
-
 
NC_008836  BMA10229_A1694  3-demethylubiquinone-9 3-methyltransferase family protein  48.45 
 
 
166 aa  153  1e-36  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3845  3-demethylubiquinone-9 3-methyltransferase family protein  47.8 
 
 
166 aa  153  1e-36  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3926  3-demethylubiquinone-9 3-methyltransferase family protein  47.8 
 
 
166 aa  153  1e-36  Burkholderia pseudomallei 1106a  Bacteria  normal  0.804807  n/a   
 
 
-
 
NC_009080  BMA10247_3127  3-demethylubiquinone-9 3-methyltransferase family protein  48.45 
 
 
166 aa  153  1e-36  Burkholderia mallei NCTC 10247  Bacteria  normal  0.447488  n/a   
 
 
-
 
NC_010681  Bphyt_1272  3-demethylubiquinone-9 3-methyltransferase  47.68 
 
 
157 aa  150  5.9999999999999996e-36  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.123176 
 
 
-
 
NC_013947  Snas_6056  3-demethylubiquinone-9 3-methyltransferase  49.02 
 
 
157 aa  151  5.9999999999999996e-36  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4234  3-demethylubiquinone-9 3-methyltransferase  49.04 
 
 
159 aa  148  3e-35  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.24428 
 
 
-
 
NC_007948  Bpro_2381  3-demethylubiquinone-9 3-methyltransferase  44.3 
 
 
165 aa  148  5e-35  Polaromonas sp. JS666  Bacteria  normal  normal  0.721078 
 
 
-
 
NC_010338  Caul_0726  3-demethylubiquinone-9 3-methyltransferase  49.35 
 
 
159 aa  148  5e-35  Caulobacter sp. K31  Bacteria  normal  0.958881  normal  0.827037 
 
 
-
 
NC_007948  Bpro_4770  3-demethylubiquinone-9 3-methyltransferase  46.1 
 
 
157 aa  147  7e-35  Polaromonas sp. JS666  Bacteria  normal  0.710501  normal 
 
 
-
 
NC_011892  Mnod_8684  3-demethylubiquinone-9 3-methyltransferase  59.48 
 
 
143 aa  147  8e-35  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp2508  hypothetical protein  44.23 
 
 
157 aa  146  1.0000000000000001e-34  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_008146  Mmcs_4089  3-demethylubiquinone-9 3-methyltransferase  48.34 
 
 
157 aa  147  1.0000000000000001e-34  Mycobacterium sp. MCS  Bacteria  normal  0.0395485  n/a   
 
 
-
 
NC_008705  Mkms_4165  3-demethylubiquinone-9 3-methyltransferase  48.34 
 
 
157 aa  147  1.0000000000000001e-34  Mycobacterium sp. KMS  Bacteria  normal  0.982524  normal 
 
 
-
 
NC_009077  Mjls_4319  3-demethylubiquinone-9 3-methyltransferase  48.34 
 
 
157 aa  147  1.0000000000000001e-34  Mycobacterium sp. JLS  Bacteria  normal  normal  0.26374 
 
 
-
 
NC_013947  Snas_0556  3-demethylubiquinone-9 3-methyltransferase  46.79 
 
 
157 aa  147  1.0000000000000001e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3368  3-demethylubiquinone-9 3-methyltransferase  46.5 
 
 
165 aa  146  2.0000000000000003e-34  Burkholderia sp. 383  Bacteria  hitchhiker  0.00653242  normal 
 
 
-
 
NC_014210  Ndas_2083  3-demethylubiquinone-9 3-methyltransferase  50 
 
 
160 aa  145  3e-34  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.118057  normal 
 
 
-
 
NC_008726  Mvan_4607  3-demethylubiquinone-9 3-methyltransferase  47.06 
 
 
157 aa  145  3e-34  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.576518  normal 
 
 
-
 
NC_007964  Nham_3519  3-demethylubiquinone-9 3-methyltransferase  49.03 
 
 
157 aa  144  4.0000000000000006e-34  Nitrobacter hamburgensis X14  Bacteria  normal  0.194698  n/a   
 
 
-
 
NC_007404  Tbd_1049  hypothetical protein  46.3 
 
 
178 aa  143  1e-33  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.980196  normal  0.183068 
 
 
-
 
NC_008060  Bcen_2841  3-demethylubiquinone-9 3-methyltransferase  45.86 
 
 
165 aa  142  2e-33  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.128883  n/a   
 
 
-
 
NC_008254  Meso_0138  3-demethylubiquinone-9 3-methyltransferase  46.62 
 
 
156 aa  143  2e-33  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0266  3-demethylubiquinone-9 3-methyltransferase  45.86 
 
 
165 aa  142  2e-33  Burkholderia cenocepacia HI2424  Bacteria  normal  0.110182  n/a   
 
 
-
 
NC_008390  Bamb_0179  3-demethylubiquinone-9 3-methyltransferase  44.59 
 
 
165 aa  142  3e-33  Burkholderia ambifaria AMMD  Bacteria  normal  0.637096  n/a   
 
 
-
 
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