146 homologs were found in PanDaTox collection
for query gene Bind_3138 on replicon NC_010581
Organism: Beijerinckia indica subsp. indica ATCC 9039



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010581  Bind_3138  CarD family transcriptional regulator  100 
 
 
368 aa  742    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1371  transcriptional regulator, CarD family  80.53 
 
 
456 aa  320  3e-86  Methylocella silvestris BL2  Bacteria  n/a    normal  0.401785 
 
 
-
 
NC_009720  Xaut_0187  CarD family transcriptional regulator  73.96 
 
 
206 aa  292  5e-78  Xanthobacter autotrophicus Py2  Bacteria  normal  0.160759  normal 
 
 
-
 
NC_007778  RPB_0551  CarD family transcriptional regulator  68.78 
 
 
429 aa  281  9e-75  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0207185  normal  0.0758016 
 
 
-
 
NC_007925  RPC_0548  CarD family transcriptional regulator  71.35 
 
 
365 aa  280  2e-74  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.300109  normal  0.699777 
 
 
-
 
NC_007406  Nwi_0412  transcription factor CarD  70.97 
 
 
283 aa  279  6e-74  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.595911  normal 
 
 
-
 
NC_007958  RPD_0278  transcription factor CarD  61 
 
 
432 aa  275  1.0000000000000001e-72  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.197745 
 
 
-
 
NC_010511  M446_4805  CarD family transcriptional regulator  78.57 
 
 
197 aa  274  2.0000000000000002e-72  Methylobacterium sp. 4-46  Bacteria  normal  0.0268969  hitchhiker  0.000256244 
 
 
-
 
NC_011894  Mnod_1718  transcriptional regulator, CarD family  77.19 
 
 
197 aa  273  3e-72  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3379  CarD family transcriptional regulator  69.11 
 
 
190 aa  273  3e-72  Chelativorans sp. BNC1  Bacteria  decreased coverage  0.0000000818177  n/a   
 
 
 
NC_007964  Nham_0507  CarD family transcriptional regulator  64.9 
 
 
259 aa  271  1e-71  Nitrobacter hamburgensis X14  Bacteria  normal  0.0122387  n/a   
 
 
-
 
NC_010505  Mrad2831_3708  CarD family transcriptional regulator  70.9 
 
 
201 aa  271  1e-71  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.378672 
 
 
-
 
NC_010725  Mpop_4337  transcriptional regulator, CarD family  74.71 
 
 
198 aa  271  2e-71  Methylobacterium populi BJ001  Bacteria  normal  0.139184  normal  0.529688 
 
 
-
 
NC_011004  Rpal_0489  transcriptional regulator, CarD family  74.25 
 
 
278 aa  270  2e-71  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4190  transcriptional regulator, CarD family  74.71 
 
 
196 aa  269  5e-71  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.627659  normal  0.224383 
 
 
-
 
NC_009485  BBta_7543  CarD family transcriptional regulator  74.4 
 
 
278 aa  269  5.9999999999999995e-71  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.330727  normal 
 
 
-
 
NC_010172  Mext_3880  transcription factor CarD  74.14 
 
 
196 aa  268  8e-71  Methylobacterium extorquens PA1  Bacteria  normal  0.260556  normal  0.0799721 
 
 
-
 
NC_009636  Smed_3112  CarD family transcriptional regulator  71.75 
 
 
189 aa  268  8.999999999999999e-71  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.0000522164  normal 
 
 
-
 
NC_011369  Rleg2_3814  transcriptional regulator, CarD family  70.62 
 
 
190 aa  263  3e-69  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4143  transcriptional regulator, CarD family  70.62 
 
 
190 aa  263  3e-69  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0239678  normal  0.0810654 
 
 
-
 
NC_004310  BR1766  transcriptional regulator, putative  71.19 
 
 
191 aa  263  4e-69  Brucella suis 1330  Bacteria  hitchhiker  0.000100794  n/a   
 
 
-
 
NC_009505  BOV_1702  putative transcriptional regulator  71.19 
 
 
191 aa  263  4e-69  Brucella ovis ATCC 25840  Bacteria  unclonable  0.00000176532  n/a   
 
 
-
 
NC_009667  Oant_1134  CarD family transcriptional regulator  73.49 
 
 
193 aa  260  3e-68  Ochrobactrum anthropi ATCC 49188  Bacteria  hitchhiker  0.000250032  n/a   
 
 
-
 
NC_011989  Avi_4352  transcriptional regulator CarD family  67.55 
 
 
223 aa  259  8e-68  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1694  CarD family transcriptional regulator  72.84 
 
 
350 aa  246  3e-64  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.335809  normal  0.132221 
 
 
-
 
NC_008783  BARBAKC583_0123  CarD family transcriptional regulator  62.78 
 
 
192 aa  238  2e-61  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0576  CarD family transcriptional regulator  72.86 
 
 
169 aa  224  2e-57  Ruegeria sp. TM1040  Bacteria  unclonable  0.0000000000504519  unclonable  0.0000000218406 
 
 
-
 
NC_007493  RSP_2425  CarD family transcriptional regulator  67.52 
 
 
169 aa  223  3e-57  Rhodobacter sphaeroides 2.4.1  Bacteria  unclonable  0.0000259686  n/a   
 
 
-
 
NC_009049  Rsph17029_1089  CarD family transcriptional regulator  67.52 
 
 
169 aa  223  3e-57  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0349811  normal 
 
 
-
 
NC_009428  Rsph17025_1557  CarD family transcriptional regulator  67.52 
 
 
169 aa  223  3e-57  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0486007  normal  0.568097 
 
 
-
 
NC_009952  Dshi_0786  transcriptional regulator  72.86 
 
 
170 aa  223  4.9999999999999996e-57  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.000100342  normal  0.0526342 
 
 
-
 
NC_008686  Pden_1825  CarD family transcriptional regulator  62.35 
 
 
169 aa  219  7e-56  Paracoccus denitrificans PD1222  Bacteria  unclonable  0.00000000000495809  normal  0.361852 
 
 
-
 
NC_007802  Jann_3308  CarD family transcriptional regulator  71.03 
 
 
172 aa  217  2.9999999999999998e-55  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.0000000178714  normal  0.0560372 
 
 
-
 
NC_010338  Caul_4112  CarD family transcriptional regulator  60.13 
 
 
170 aa  206  4e-52  Caulobacter sp. K31  Bacteria  hitchhiker  0.00258914  normal  0.616295 
 
 
-
 
NC_008347  Mmar10_2296  CarD family transcriptional regulator  58.23 
 
 
169 aa  201  1.9999999999999998e-50  Maricaulis maris MCS10  Bacteria  decreased coverage  0.0000229013  normal  0.715869 
 
 
-
 
NC_009511  Swit_3537  CarD family transcriptional regulator  60.99 
 
 
172 aa  191  2e-47  Sphingomonas wittichii RW1  Bacteria  normal  0.92305  normal  0.183465 
 
 
-
 
NC_007794  Saro_0124  CarD family transcriptional regulator  56.58 
 
 
174 aa  189  8e-47  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_0247  CarD family transcriptional regulator  59.15 
 
 
175 aa  186  4e-46  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.246568 
 
 
-
 
NC_007643  Rru_A0079  CarD family transcriptional regulator  58.27 
 
 
165 aa  182  9.000000000000001e-45  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_3091  CarD family transcriptional regulator  58.04 
 
 
266 aa  179  8e-44  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0077  transcriptional regulator, CarD family  43.97 
 
 
196 aa  128  2.0000000000000002e-28  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.449378  hitchhiker  0.00491109 
 
 
-
 
NC_008751  Dvul_1561  CarD family transcriptional regulator  38.22 
 
 
171 aa  95.5  1e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  0.0294353  normal 
 
 
-
 
NC_007498  Pcar_0104  putative transcriptional regulator  37.86 
 
 
161 aa  93.6  5e-18  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3655  CarD family transcriptional regulator  33.78 
 
 
159 aa  93.2  6e-18  Syntrophobacter fumaroxidans MPOB  Bacteria  unclonable  0.000000563805  normal 
 
 
-
 
NC_011883  Ddes_1455  transcriptional regulator, CarD family  35.14 
 
 
171 aa  87.8  3e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  hitchhiker  0.000871292  n/a   
 
 
-
 
NC_007519  Dde_2129  CarD family transcriptional regulator  34.75 
 
 
171 aa  85.9  9e-16  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00000417327  n/a   
 
 
-
 
NC_009253  Dred_0185  CarD family transcriptional regulator  34.64 
 
 
158 aa  85.9  0.000000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0164199  n/a   
 
 
-
 
NC_009675  Anae109_2498  CarD family transcriptional regulator  31.51 
 
 
171 aa  85.1  0.000000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.860997  hitchhiker  0.00028149 
 
 
-
 
NC_009943  Dole_2821  CarD family transcriptional regulator  27.88 
 
 
188 aa  84.7  0.000000000000002  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.000000000911518  n/a   
 
 
-
 
NC_011769  DvMF_0490  transcriptional regulator, CarD family  34.27 
 
 
171 aa  85.1  0.000000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.00257809 
 
 
-
 
NC_007760  Adeh_1271  CarD family transcriptional regulator  31.58 
 
 
171 aa  84.3  0.000000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0355661  n/a   
 
 
-
 
NC_011891  A2cp1_2685  transcriptional regulator, CarD family  31.58 
 
 
171 aa  84.3  0.000000000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  decreased coverage  0.000114953  n/a   
 
 
-
 
NC_011145  AnaeK_2592  transcriptional regulator, CarD family  31.58 
 
 
171 aa  84.3  0.000000000000003  Anaeromyxobacter sp. K  Bacteria  normal  0.0112448  n/a   
 
 
-
 
NC_013173  Dbac_0676  transcriptional regulator, CarD family  34.62 
 
 
176 aa  80.9  0.00000000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.000000026469  n/a   
 
 
-
 
NC_013223  Dret_0842  transcriptional regulator, CarD family  32.62 
 
 
174 aa  80.5  0.00000000000005  Desulfohalobium retbaense DSM 5692  Bacteria  hitchhiker  0.000000502927  normal  0.471539 
 
 
-
 
NC_013440  Hoch_4522  transcriptional regulator, CarD family  31.65 
 
 
162 aa  79.7  0.00000000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  0.76792  normal 
 
 
-
 
NC_014210  Ndas_4319  transcriptional regulator, CarD family  33.33 
 
 
160 aa  76.6  0.0000000000007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2907  CarD family transcriptional regulator  32.69 
 
 
160 aa  76.3  0.0000000000008  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_3676  CarD family transcriptional regulator  31.91 
 
 
158 aa  74.3  0.000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1687  transcriptional regulator, CarD family  30.66 
 
 
171 aa  73.9  0.000000000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.613225  normal  0.385121 
 
 
-
 
NC_008726  Mvan_5340  CarD family transcriptional regulator  34.06 
 
 
162 aa  72  0.00000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_1444  CarD family transcriptional regulator  34.06 
 
 
162 aa  72.8  0.00000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.250117 
 
 
-
 
NC_009674  Bcer98_3388  CarD family transcriptional regulator  31.37 
 
 
159 aa  72.8  0.00000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0259  transcriptional regulator, CarD family  31.17 
 
 
158 aa  72.4  0.00000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000000116082  normal  0.0229238 
 
 
-
 
NC_008146  Mmcs_4740  CarD family transcriptional regulator  30.77 
 
 
162 aa  72  0.00000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4826  CarD family transcriptional regulator  30.77 
 
 
162 aa  72  0.00000000002  Mycobacterium sp. KMS  Bacteria  normal  0.652741  normal  0.999363 
 
 
-
 
NC_009077  Mjls_5126  CarD family transcriptional regulator  30.77 
 
 
162 aa  72  0.00000000002  Mycobacterium sp. JLS  Bacteria  normal  normal  0.593452 
 
 
-
 
NC_009565  TBFG_13616  transcription factor  33.33 
 
 
162 aa  72  0.00000000002  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.392977 
 
 
-
 
NC_013757  Gobs_0651  transcriptional regulator, CarD family  31.85 
 
 
160 aa  71.6  0.00000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.058243  n/a   
 
 
-
 
NC_011772  BCG9842_B2164  transcriptional regulator, CarD family  31.21 
 
 
153 aa  71.6  0.00000000002  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_0601  transcriptional regulator, CarD family  34.06 
 
 
162 aa  71.2  0.00000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.251005  n/a   
 
 
-
 
NC_010718  Nther_0164  transcriptional regulator, CarD family  28.66 
 
 
161 aa  70.9  0.00000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.475576  normal 
 
 
-
 
NC_010816  BLD_0751  transcriptional_regulator  30.48 
 
 
197 aa  70.5  0.00000000004  Bifidobacterium longum DJO10A  Bacteria  normal  0.024387  n/a   
 
 
-
 
NC_014150  Bmur_1516  transcriptional regulator, CarD family  31.21 
 
 
191 aa  70.5  0.00000000004  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0703  transcriptional regulator, CarD family  32 
 
 
160 aa  70.1  0.00000000005  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0540347  n/a   
 
 
-
 
NC_010424  Daud_0184  CarD family transcriptional regulator  30.07 
 
 
158 aa  69.7  0.00000000008  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.0000461905  n/a   
 
 
-
 
NC_011830  Dhaf_0392  transcriptional regulator, CarD family  31.3 
 
 
158 aa  69.7  0.00000000008  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000000362697  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3335  CarD family transcriptional regulator  29.79 
 
 
158 aa  69.7  0.00000000009  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.512684  n/a   
 
 
-
 
NC_009012  Cthe_2940  CarD family transcriptional regulator  30.5 
 
 
158 aa  68.9  0.0000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0364  transcriptional regulator, CarD family  34.06 
 
 
162 aa  69.3  0.0000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.376987  n/a   
 
 
-
 
NC_013235  Namu_0866  transcriptional regulator, CarD family  31.41 
 
 
160 aa  68.6  0.0000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.795809 
 
 
-
 
NC_013441  Gbro_0970  transcription factor CarD  29.08 
 
 
162 aa  68.2  0.0000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.0421613  n/a   
 
 
-
 
NC_012803  Mlut_03770  transcriptional regulator, CarD family  31.08 
 
 
160 aa  68.2  0.0000000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.0832449  n/a   
 
 
-
 
NC_006274  BCZK2880  CarD family transcriptional regulator  31.21 
 
 
158 aa  67.8  0.0000000003  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0501  CarD family transcriptional regulator  30.77 
 
 
163 aa  67.8  0.0000000003  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_00900  transcriptional regulator, CarD family  26.25 
 
 
176 aa  67.8  0.0000000003  Halothermothrix orenii H 168  Bacteria  decreased coverage  8.92061e-17  n/a   
 
 
-
 
NC_007777  Francci3_4255  CarD family transcriptional regulator  30.13 
 
 
160 aa  67.8  0.0000000003  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_4262  transcription factor CarD  30.77 
 
 
161 aa  67.8  0.0000000003  Salinispora tropica CNB-440  Bacteria  normal  normal  0.102192 
 
 
-
 
NC_009921  Franean1_0362  CarD family transcriptional regulator  30.13 
 
 
160 aa  67.8  0.0000000003  Frankia sp. EAN1pec  Bacteria  normal  0.0755625  hitchhiker  0.00187432 
 
 
-
 
NC_009953  Sare_4692  CarD family transcriptional regulator  30.77 
 
 
161 aa  67.8  0.0000000003  Salinispora arenicola CNS-205  Bacteria  normal  0.372756  normal 
 
 
-
 
NC_010184  BcerKBAB4_1065  CarD family transcriptional regulator  30.5 
 
 
153 aa  67.8  0.0000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0695746  n/a   
 
 
-
 
NC_013169  Ksed_03720  transcriptional regulator, CarD family  30.34 
 
 
160 aa  67.4  0.0000000004  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.178862 
 
 
-
 
NC_013595  Sros_0963  CarD family transcriptional regulator  30.13 
 
 
160 aa  66.6  0.0000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0142  transcriptional regulator, CarD family  29.49 
 
 
161 aa  66.6  0.0000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.432895  normal  0.208842 
 
 
-
 
NC_002967  TDE2290  transcriptional regulator, putative  29.94 
 
 
208 aa  65.9  0.000000001  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_35090  transcriptional regulator, CarD family  30.13 
 
 
163 aa  65.9  0.000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.86286 
 
 
-
 
NC_005957  BT9727_3401  CarD family transcriptional regulator  29.08 
 
 
158 aa  65.1  0.000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3350  CarD family transcriptional regulator  29.08 
 
 
158 aa  64.7  0.000000002  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A3756  transcriptional regulator, CarD family  28.37 
 
 
158 aa  65.1  0.000000002  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_3658  transcriptional regulator, CarD family  29.08 
 
 
158 aa  64.7  0.000000002  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
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