More than 300 homologs were found in PanDaTox collection
for query gene Bfae_18560 on replicon NC_013172
Organism: Brachybacterium faecium DSM 4810



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013441  Gbro_3215  3-isopropylmalate dehydratase, large subunit  76.5 
 
 
477 aa  724    Gordonia bronchialis DSM 43247  Bacteria  normal  0.056695  n/a   
 
 
-
 
NC_013235  Namu_1478  3-isopropylmalate dehydratase, large subunit  77.02 
 
 
486 aa  749    Nakamurella multipartita DSM 44233  Bacteria  normal  0.333411  normal  0.827202 
 
 
-
 
NC_009953  Sare_1149  isopropylmalate isomerase large subunit  73.36 
 
 
481 aa  689    Salinispora arenicola CNS-205  Bacteria  normal  unclonable  0.0000000597548 
 
 
-
 
NC_013947  Snas_4999  3-isopropylmalate dehydratase large subunit  74.08 
 
 
470 aa  691    Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.653294  normal  0.386887 
 
 
-
 
NC_013131  Caci_8049  3-isopropylmalate dehydratase, large subunit  81.02 
 
 
468 aa  771    Catenulispora acidiphila DSM 44928  Bacteria  normal  0.200463  normal 
 
 
-
 
NC_013521  Sked_11100  3-isopropylmalate dehydratase, large subunit  82.22 
 
 
479 aa  808    Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1258  isopropylmalate isomerase large subunit  72.3 
 
 
481 aa  684    Salinispora tropica CNB-440  Bacteria  normal  0.55744  normal  0.382246 
 
 
-
 
NC_007333  Tfu_0626  isopropylmalate isomerase large subunit  77.9 
 
 
465 aa  748    Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1573  3-isopropylmalate dehydratase, large subunit  79.84 
 
 
493 aa  786    Beutenbergia cavernae DSM 12333  Bacteria  normal  0.488131  normal 
 
 
-
 
NC_009921  Franean1_1113  isopropylmalate isomerase large subunit  73.39 
 
 
465 aa  667    Frankia sp. EAN1pec  Bacteria  normal  0.681996  normal  0.828695 
 
 
-
 
NC_013595  Sros_8018  3-isopropylmalate dehydratase, large subunit  73.61 
 
 
459 aa  694    Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1358  3-isopropylmalate dehydratase, large subunit  78.86 
 
 
477 aa  767    Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.849318 
 
 
-
 
NC_012803  Mlut_08740  3-isopropylmalate dehydratase, large subunit  80.81 
 
 
484 aa  766    Micrococcus luteus NCTC 2665  Bacteria  decreased coverage  0.000460564  n/a   
 
 
-
 
NC_007777  Francci3_3621  isopropylmalate isomerase large subunit  70.82 
 
 
465 aa  646    Frankia sp. CcI3  Bacteria  normal  normal  0.766514 
 
 
-
 
NC_013757  Gobs_4053  3-isopropylmalate dehydratase, large subunit  72.4 
 
 
474 aa  697    Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_09060  3-isopropylmalate dehydratase, large subunit  79.05 
 
 
471 aa  753    Saccharomonospora viridis DSM 43017  Bacteria  normal  0.918212  normal 
 
 
-
 
NC_014210  Ndas_0185  3-isopropylmalate dehydratase, large subunit  75.21 
 
 
468 aa  722    Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.08009  normal 
 
 
-
 
NC_011886  Achl_2256  isopropylmalate isomerase large subunit  79.57 
 
 
484 aa  772    Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000783708 
 
 
-
 
NC_008146  Mmcs_1921  isopropylmalate isomerase large subunit  76.33 
 
 
481 aa  731    Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0278  isopropylmalate isomerase large subunit  66.81 
 
 
469 aa  645    Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_18560  3-isopropylmalate dehydratase, large subunit  100 
 
 
479 aa  976    Brachybacterium faecium DSM 4810  Bacteria  normal  0.242112  n/a   
 
 
-
 
NC_014151  Cfla_2316  3-isopropylmalate dehydratase, large subunit  81.21 
 
 
487 aa  800    Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000114053 
 
 
-
 
NC_013530  Xcel_2357  3-isopropylmalate dehydratase, large subunit  82.11 
 
 
517 aa  796    Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_2802  3-isopropylmalate dehydratase large subunit  74.03 
 
 
462 aa  687    Thermobispora bispora DSM 43833  Bacteria  normal  0.0861644  normal  0.228539 
 
 
-
 
NC_010816  BLD_1596  isopropylmalate isomerase large subunit  73.66 
 
 
467 aa  709    Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4227  isopropylmalate isomerase large subunit  79.1 
 
 
481 aa  751    Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.888543 
 
 
-
 
NC_009077  Mjls_1901  isopropylmalate isomerase large subunit  76.33 
 
 
481 aa  731    Mycobacterium sp. JLS  Bacteria  normal  normal  0.918864 
 
 
-
 
NC_014158  Tpau_2848  3-isopropylmalate dehydratase, large subunit  74.3 
 
 
481 aa  703    Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_2519  isopropylmalate isomerase large subunit  78.94 
 
 
484 aa  770    Arthrobacter sp. FB24  Bacteria  normal  0.252815  n/a   
 
 
-
 
NC_013093  Amir_6006  3-isopropylmalate dehydratase, large subunit  78.95 
 
 
472 aa  749    Actinosynnema mirum DSM 43827  Bacteria  normal  0.0519027  n/a   
 
 
-
 
NC_008578  Acel_1591  isopropylmalate isomerase large subunit  76.67 
 
 
473 aa  716    Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.777227 
 
 
-
 
NC_008699  Noca_3298  3-isopropylmalate dehydratase, large subunit  73.82 
 
 
471 aa  704    Nocardioides sp. JS614  Bacteria  normal  0.405916  n/a   
 
 
-
 
NC_013510  Tcur_3463  3-isopropylmalate dehydratase, large subunit  76.39 
 
 
465 aa  720    Thermomonospora curvata DSM 43183  Bacteria  normal  0.0762821  n/a   
 
 
-
 
NC_008705  Mkms_1967  isopropylmalate isomerase large subunit  76.33 
 
 
481 aa  731    Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2135  isopropylmalate isomerase large subunit  77.19 
 
 
481 aa  739    Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_13003  isopropylmalate isomerase large subunit  74.3 
 
 
473 aa  711    Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0194  3-isopropylmalate dehydratase, large subunit  65.86 
 
 
469 aa  611  9.999999999999999e-175  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007643  Rru_A1189  isopropylmalate isomerase large subunit  62.63 
 
 
472 aa  592  1e-168  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.672672  n/a   
 
 
-
 
NC_009972  Haur_4441  isopropylmalate isomerase large subunit  61.64 
 
 
471 aa  588  1e-167  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_1534  3-isopropylmalate dehydratase, large subunit  63.73 
 
 
468 aa  585  1e-166  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.706683  n/a   
 
 
-
 
NC_009049  Rsph17029_2523  isopropylmalate isomerase large subunit  63.56 
 
 
475 aa  583  1.0000000000000001e-165  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.520601  normal 
 
 
-
 
NC_007493  RSP_0863  isopropylmalate isomerase large subunit  63.35 
 
 
475 aa  583  1.0000000000000001e-165  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_2149  isopropylmalate isomerase large subunit  61.37 
 
 
466 aa  580  1e-164  Acidiphilium cryptum JF-5  Bacteria  normal  0.754808  n/a   
 
 
-
 
NC_009428  Rsph17025_0158  isopropylmalate isomerase large subunit  62.88 
 
 
472 aa  580  1e-164  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_0861  isopropylmalate isomerase large subunit  60.65 
 
 
471 aa  574  1.0000000000000001e-162  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011080  SNSL254_A0123  isopropylmalate isomerase large subunit  62.04 
 
 
466 aa  571  1.0000000000000001e-162  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.610682  normal  0.713431 
 
 
-
 
NC_013456  VEA_001658  3-isopropylmalate dehydratase large subunit  61.61 
 
 
466 aa  572  1.0000000000000001e-162  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C0122  isopropylmalate isomerase large subunit  62.04 
 
 
466 aa  571  1.0000000000000001e-162  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.924094  normal  0.160243 
 
 
-
 
NC_011094  SeSA_A0127  isopropylmalate isomerase large subunit  62.04 
 
 
466 aa  571  1.0000000000000001e-162  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.03719 
 
 
-
 
NC_009767  Rcas_1549  isopropylmalate isomerase large subunit  60.6 
 
 
472 aa  574  1.0000000000000001e-162  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.269438  normal  0.14031 
 
 
-
 
NC_011149  SeAg_B0127  isopropylmalate isomerase large subunit  62.04 
 
 
466 aa  571  1.0000000000000001e-162  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A0120  isopropylmalate isomerase large subunit  62.04 
 
 
466 aa  571  1.0000000000000001e-162  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_00074  isopropylmalate isomerase large subunit  61.39 
 
 
466 aa  571  1e-161  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3526  3-isopropylmalate dehydratase, large subunit  61.39 
 
 
466 aa  571  1e-161  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3585  isopropylmalate isomerase large subunit  61.17 
 
 
466 aa  570  1e-161  Escherichia coli ATCC 8739  Bacteria  normal  hitchhiker  0.000478946 
 
 
-
 
NC_009783  VIBHAR_00815  isopropylmalate isomerase large subunit  60.94 
 
 
466 aa  568  1e-161  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012892  B21_00073  hypothetical protein  61.39 
 
 
466 aa  571  1e-161  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0077  isopropylmalate isomerase large subunit  61.39 
 
 
466 aa  571  1e-161  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.387894 
 
 
-
 
NC_009800  EcHS_A0077  isopropylmalate isomerase large subunit  61.17 
 
 
466 aa  570  1e-161  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0066  isopropylmalate isomerase large subunit  61.39 
 
 
466 aa  571  1e-161  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA2065  isopropylmalate isomerase large subunit  62.39 
 
 
470 aa  567  1e-160  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0240  isopropylmalate isomerase large subunit  62.25 
 
 
469 aa  565  1e-160  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2785  isopropylmalate isomerase large subunit  62.7 
 
 
468 aa  567  1e-160  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.378068  normal 
 
 
-
 
NC_009801  EcE24377A_0075  isopropylmalate isomerase large subunit  61.17 
 
 
466 aa  568  1e-160  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1961  isopropylmalate isomerase large subunit  60.34 
 
 
474 aa  565  1e-160  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0348  isopropylmalate isomerase large subunit  62.7 
 
 
470 aa  566  1e-160  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0227  isopropylmalate isomerase large subunit  62.7 
 
 
473 aa  565  1e-160  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.00400027 
 
 
-
 
NC_009719  Plav_1423  3-isopropylmalate dehydratase, large subunit  58.64 
 
 
473 aa  566  1e-160  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0504  isopropylmalate isomerase large subunit  62.7 
 
 
470 aa  566  1e-160  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_0079  isopropylmalate isomerase large subunit  61.17 
 
 
466 aa  568  1e-160  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A2067  isopropylmalate isomerase large subunit  61.07 
 
 
467 aa  561  1.0000000000000001e-159  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0764  isopropylmalate isomerase large subunit  61.39 
 
 
469 aa  562  1.0000000000000001e-159  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_013412  GYMC61_3567  isopropylmalate isomerase large subunit  61.74 
 
 
477 aa  563  1.0000000000000001e-159  Geobacillus sp. Y412MC61  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_3584  isopropylmalate isomerase large subunit  62.02 
 
 
468 aa  564  1.0000000000000001e-159  Nitrobacter hamburgensis X14  Bacteria  normal  0.931395  n/a   
 
 
-
 
NC_009436  Ent638_0620  isopropylmalate isomerase large subunit  60.52 
 
 
466 aa  563  1.0000000000000001e-159  Enterobacter sp. 638  Bacteria  normal  normal  0.135441 
 
 
-
 
NC_009485  BBta_0363  isopropylmalate isomerase large subunit  61.8 
 
 
468 aa  561  1e-158  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.271446  normal  0.532793 
 
 
-
 
NC_004310  BR1906  isopropylmalate isomerase large subunit  62.78 
 
 
469 aa  559  1e-158  Brucella suis 1330  Bacteria  normal  0.276241  n/a   
 
 
-
 
NC_009952  Dshi_0085  isopropylmalate isomerase large subunit  62.55 
 
 
467 aa  558  1e-158  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.362256  normal  0.223362 
 
 
-
 
NC_009505  BOV_1834  isopropylmalate isomerase large subunit  62.78 
 
 
469 aa  559  1e-158  Brucella ovis ATCC 25840  Bacteria  normal  0.538456  n/a   
 
 
-
 
NC_013889  TK90_1343  3-isopropylmalate dehydratase, large subunit  60.72 
 
 
470 aa  556  1e-157  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.444862 
 
 
-
 
NC_013421  Pecwa_3797  isopropylmalate isomerase large subunit  58.37 
 
 
466 aa  556  1e-157  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0375  isopropylmalate isomerase large subunit  59.96 
 
 
471 aa  555  1e-157  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2591  isopropylmalate isomerase large subunit  60.44 
 
 
471 aa  558  1e-157  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00933091  n/a   
 
 
-
 
NC_008044  TM1040_2508  isopropylmalate isomerase large subunit  63.6 
 
 
467 aa  555  1e-157  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_1057  isopropylmalate isomerase large subunit  60.52 
 
 
469 aa  556  1e-157  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.960077  normal  0.219462 
 
 
-
 
NC_011365  Gdia_3280  isopropylmalate isomerase large subunit  60.43 
 
 
467 aa  558  1e-157  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.215534  normal 
 
 
-
 
NC_012917  PC1_3609  isopropylmalate isomerase large subunit  58.58 
 
 
466 aa  557  1e-157  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2520  isopropylmalate isomerase large subunit  62.5 
 
 
478 aa  555  1e-157  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1245  isopropylmalate isomerase large subunit  60.17 
 
 
470 aa  553  1e-156  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.923179  n/a   
 
 
-
 
NC_012880  Dd703_0630  3-isopropylmalate dehydratase, large subunit  58.37 
 
 
466 aa  554  1e-156  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3537  isopropylmalate isomerase large subunit  58.06 
 
 
476 aa  551  1e-156  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009355  OSTLU_28677  predicted protein  59.79 
 
 
722 aa  553  1e-156  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  n/a   
 
 
-
 
NC_008009  Acid345_2916  isopropylmalate isomerase large subunit  60.04 
 
 
470 aa  551  1e-156  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A2938  isopropylmalate isomerase large subunit  58.06 
 
 
476 aa  551  1e-156  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3550  3-isopropylmalate dehydratase, large subunit  60.87 
 
 
456 aa  554  1e-156  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1228  isopropylmalate isomerase large subunit  61.33 
 
 
469 aa  553  1e-156  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0896395 
 
 
-
 
NC_009708  YpsIP31758_3407  isopropylmalate isomerase large subunit  58.06 
 
 
476 aa  551  1e-156  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0743  isopropylmalate isomerase large subunit  59.38 
 
 
466 aa  553  1e-156  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1812  isopropylmalate isomerase large subunit  62.5 
 
 
466 aa  552  1e-156  Halorhodospira halophila SL1  Bacteria  normal  0.364535  n/a   
 
 
-
 
NC_008740  Maqu_1565  isopropylmalate isomerase large subunit  59.87 
 
 
472 aa  554  1e-156  Marinobacter aquaeolei VT8  Bacteria  normal  0.046679  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>