More than 300 homologs were found in PanDaTox collection
for query gene Bamb_5645 on replicon NC_008392
Organism: Burkholderia ambifaria AMMD



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009078  BURPS1106A_A3034  sigma-54 dependent DNA-binding response regulator  84.41 
 
 
456 aa  765    Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1982  sigma-54 dependent DNA-binding response regulator  84.41 
 
 
456 aa  765    Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1382  putative sigma-54 interacting response regulator  84.41 
 
 
456 aa  765    Burkholderia pseudomallei 1710b  Bacteria  normal  0.134405  n/a   
 
 
-
 
NC_008784  BMASAVP1_1004  sigma-54 dependent DNA-binding response regulator  84.41 
 
 
456 aa  765    Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7013  two component, sigma54 specific, Fis family transcriptional regulator  93.41 
 
 
455 aa  875    Burkholderia sp. 383  Bacteria  normal  0.624192  normal 
 
 
-
 
NC_008835  BMA10229_1293  sigma-54 dependent DNA-binding response regulator  84.41 
 
 
456 aa  765    Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_010557  BamMC406_6393  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
455 aa  923    Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.106085 
 
 
-
 
NC_010087  Bmul_5447  two component, sigma54 specific, Fis family transcriptional regulator  95.82 
 
 
455 aa  895    Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00491011 
 
 
-
 
NC_009075  BURPS668_A3163  sigma-54 dependent DNA-binding response regulator  84.41 
 
 
456 aa  765    Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1378  two component, sigma54 specific, Fis family transcriptional regulator  95.82 
 
 
455 aa  893    Burkholderia cenocepacia AU 1054  Bacteria  normal  0.713038  n/a   
 
 
-
 
NC_009079  BMA10247_A2268  sigma-54 dependent DNA-binding response regulator  84.41 
 
 
456 aa  765    Burkholderia mallei NCTC 10247  Bacteria  normal  0.071991  n/a   
 
 
-
 
NC_008392  Bamb_5645  two component, sigma54 specific, Fis family transcriptional regulator  100 
 
 
455 aa  923    Burkholderia ambifaria AMMD  Bacteria  normal  0.668018  normal  0.173621 
 
 
-
 
NC_008544  Bcen2424_6451  two component, sigma54 specific, Fis family transcriptional regulator  95.82 
 
 
455 aa  893    Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6043  two component, sigma54 specific, Fis family transcriptional regulator  96.26 
 
 
455 aa  897    Burkholderia cenocepacia MC0-3  Bacteria  normal  0.174163  normal  0.310936 
 
 
-
 
NC_003296  RS02226  sigma-54 interacting response regulator transcription regulator protein  62.25 
 
 
491 aa  572  1.0000000000000001e-162  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_3878  two component, sigma54 specific, transcriptional regulator, Fis family  60.89 
 
 
468 aa  564  1.0000000000000001e-159  Ralstonia pickettii 12D  Bacteria  normal  0.330744  normal 
 
 
-
 
NC_010678  Rpic_3767  two component, sigma54 specific, transcriptional regulator, Fis family  60.89 
 
 
468 aa  564  1.0000000000000001e-159  Ralstonia pickettii 12J  Bacteria  normal  0.114638  normal  0.0523944 
 
 
-
 
NC_010681  Bphyt_1136  two component, sigma54 specific, transcriptional regulator, Fis family  61.35 
 
 
466 aa  557  1e-157  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3376  two component, sigma-54 specific, Fis family transcriptional regulator  61.12 
 
 
466 aa  557  1e-157  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.418945 
 
 
-
 
NC_010622  Bphy_2148  two component, sigma54 specific, Fis family transcriptional regulator  60.8 
 
 
503 aa  554  1e-156  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.000181807 
 
 
-
 
NC_007348  Reut_B5076  helix-turn-helix, Fis-type  57.05 
 
 
467 aa  525  1e-148  Ralstonia eutropha JMP134  Bacteria  normal  0.196464  n/a   
 
 
-
 
NC_010623  Bphy_4752  two component, sigma54 specific, Fis family transcriptional regulator  58.2 
 
 
477 aa  518  1e-146  Burkholderia phymatum STM815  Bacteria  normal  0.102519  normal 
 
 
-
 
NC_008752  Aave_1901  two component, sigma54 specific, Fis family transcriptional regulator  51.72 
 
 
473 aa  429  1e-119  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0172472 
 
 
-
 
NC_010002  Daci_4344  two component, sigma54 specific, Fis family transcriptional regulator  44.07 
 
 
547 aa  397  1e-109  Delftia acidovorans SPH-1  Bacteria  normal  0.162521  normal  0.0144211 
 
 
-
 
NC_007760  Adeh_1555  two component, sigma54 specific, Fis family transcriptional regulator  45.05 
 
 
467 aa  376  1e-103  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.21045  n/a   
 
 
-
 
NC_011145  AnaeK_2310  two component, sigma54 specific, transcriptional regulator, Fis family  44.37 
 
 
469 aa  370  1e-101  Anaeromyxobacter sp. K  Bacteria  normal  0.294968  n/a   
 
 
-
 
NC_011891  A2cp1_2398  two component, sigma54 specific, transcriptional regulator, Fis family  44.37 
 
 
469 aa  369  1e-101  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.313034  n/a   
 
 
-
 
NC_010681  Bphyt_2893  two component, sigma54 specific, transcriptional regulator, Fis family  43.6 
 
 
460 aa  366  1e-100  Burkholderia phytofirmans PsJN  Bacteria  normal  0.321505  normal  0.0587462 
 
 
-
 
NC_009675  Anae109_2258  two component, sigma54 specific, Fis family transcriptional regulator  45.31 
 
 
468 aa  368  1e-100  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.428008  normal  0.0222917 
 
 
-
 
NC_007951  Bxe_A1091  two component, sigma-54 specific, Fis family transcriptional regulator  43.94 
 
 
460 aa  368  1e-100  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0847  two component, sigma54 specific, Fis family transcriptional regulator  43.75 
 
 
460 aa  363  2e-99  Burkholderia phymatum STM815  Bacteria  normal  0.0166749  normal 
 
 
-
 
NC_007510  Bcep18194_A4252  two component, sigma54 specific, Fis family transcriptional regulator  44.25 
 
 
461 aa  363  4e-99  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_1098  two component, sigma54 specific, Fis family transcriptional regulator  45.36 
 
 
461 aa  363  4e-99  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0660  two component, sigma54 specific, Fis family transcriptional regulator  44.59 
 
 
461 aa  362  9e-99  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2164  two component, sigma54 specific, Fis family transcriptional regulator  44.37 
 
 
461 aa  361  1e-98  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.340092 
 
 
-
 
NC_008542  Bcen2424_1140  two component, sigma54 specific, Fis family transcriptional regulator  44.59 
 
 
461 aa  362  1e-98  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1736  sigma-54 dependent DNA-binding response regulator  44.8 
 
 
465 aa  360  3e-98  Burkholderia thailandensis E264  Bacteria  normal  0.234092  n/a   
 
 
-
 
NC_009076  BURPS1106A_2834  sigma-54 dependent DNA-binding response regulator  44.16 
 
 
465 aa  355  6.999999999999999e-97  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2821  sigma-54 dependent DNA-binding response regulator  44.16 
 
 
465 aa  355  6.999999999999999e-97  Burkholderia mallei NCTC 10229  Bacteria  normal  0.428472  n/a   
 
 
-
 
NC_006348  BMA0549  sigma-54 dependent DNA-binding response regulator  44.16 
 
 
465 aa  355  6.999999999999999e-97  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2887  sigma-54 interacting response regulator protein  44.16 
 
 
465 aa  355  6.999999999999999e-97  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2460  sigma-54 dependent DNA-binding response regulator  44.16 
 
 
465 aa  355  6.999999999999999e-97  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2773  sigma-54 dependent DNA-binding response regulator  44.16 
 
 
465 aa  355  6.999999999999999e-97  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1783  sigma-54 dependent DNA-binding response regulator  44.16 
 
 
465 aa  355  6.999999999999999e-97  Burkholderia mallei NCTC 10247  Bacteria  normal  0.231821  n/a   
 
 
-
 
NC_008009  Acid345_3274  two component, sigma54 specific, Fis family transcriptional regulator  43.3 
 
 
467 aa  354  1e-96  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0156688  normal 
 
 
-
 
NC_011138  MADE_01277  putative sigma-54 interacting response regulator protein  42.35 
 
 
443 aa  352  5.9999999999999994e-96  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.420993  n/a   
 
 
-
 
NC_008390  Bamb_1016  two component, sigma54 specific, Fis family transcriptional regulator  43.72 
 
 
461 aa  350  4e-95  Burkholderia ambifaria AMMD  Bacteria  normal  0.29025  n/a   
 
 
-
 
NC_010551  BamMC406_1020  two component, sigma54 specific, Fis family transcriptional regulator  43.51 
 
 
461 aa  348  2e-94  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1129  sigma-54 dependent DNA-binding response regulator  41.74 
 
 
453 aa  339  8e-92  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  42.19 
 
 
453 aa  338  9.999999999999999e-92  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  0.00000328811 
 
 
-
 
NC_010571  Oter_2103  two component, sigma54 specific, Fis family transcriptional regulator  40.52 
 
 
467 aa  333  3e-90  Opitutus terrae PB90-1  Bacteria  normal  0.705186  normal  0.234249 
 
 
-
 
NC_009483  Gura_2914  two component, sigma-54 specific, Fis family transcriptional regulator  41.11 
 
 
459 aa  330  4e-89  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  37.64 
 
 
473 aa  328  1.0000000000000001e-88  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_007912  Sde_0260  response regulator receiver domain-containing protein  41.43 
 
 
443 aa  327  2.0000000000000001e-88  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.514748 
 
 
-
 
NC_011883  Ddes_0187  two component, sigma54 specific, transcriptional regulator, Fis family  41.72 
 
 
457 aa  327  3e-88  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  38.84 
 
 
454 aa  327  4.0000000000000003e-88  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0730  Fis family transcriptional regulator  55.63 
 
 
388 aa  326  5e-88  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  39.11 
 
 
457 aa  326  6e-88  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  39.96 
 
 
463 aa  324  2e-87  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_009675  Anae109_2442  two component, sigma54 specific, Fis family transcriptional regulator  40.31 
 
 
480 aa  323  3e-87  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002951  regulatory protein LuxO  39.91 
 
 
468 aa  322  8e-87  Vibrio sp. Ex25  Bacteria  normal  0.0508152  n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  39.65 
 
 
454 aa  321  9.999999999999999e-87  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1960  response regulator transcription factor  39.12 
 
 
471 aa  321  1.9999999999999998e-86  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4153  two component, sigma54 specific, transcriptional regulator, Fis family  40.39 
 
 
466 aa  320  3.9999999999999996e-86  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.11717 
 
 
-
 
NC_008609  Ppro_1179  two component, sigma54 specific, Fis family transcriptional regulator  40 
 
 
457 aa  320  3.9999999999999996e-86  Pelobacter propionicus DSM 2379  Bacteria  normal  0.655382  n/a   
 
 
-
 
NC_008228  Patl_4156  two component, sigma54 specific, Fis family transcriptional regulator  39.82 
 
 
443 aa  320  3.9999999999999996e-86  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  37.97 
 
 
461 aa  320  3.9999999999999996e-86  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  37.97 
 
 
461 aa  320  5e-86  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  37.97 
 
 
461 aa  319  7e-86  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  37.97 
 
 
461 aa  319  7e-86  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  37.97 
 
 
461 aa  319  7e-86  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_012918  GM21_1698  two component, sigma54 specific, transcriptional regulator, Fis family  39.02 
 
 
457 aa  319  7e-86  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000740904 
 
 
-
 
NC_010814  Glov_3407  two component, sigma54 specific, transcriptional regulator, Fis family  39.18 
 
 
458 aa  319  7e-86  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0925  two component, sigma-54 specific, Fis family transcriptional regulator  37.85 
 
 
500 aa  319  7e-86  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  37.97 
 
 
461 aa  319  7e-86  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  38.66 
 
 
473 aa  318  1e-85  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  39.91 
 
 
460 aa  318  1e-85  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1635  two component, sigma54 specific, transcriptional regulator, Fis family  37.72 
 
 
457 aa  318  1e-85  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007760  Adeh_1326  two component, sigma54 specific, Fis family transcriptional regulator  39.91 
 
 
485 aa  318  1e-85  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  38.66 
 
 
473 aa  318  1e-85  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_011145  AnaeK_2533  two component, sigma54 specific, transcriptional regulator, Fis family  39.91 
 
 
483 aa  318  1e-85  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02959  hypothetical protein  39.44 
 
 
467 aa  318  1e-85  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011891  A2cp1_2629  two component, sigma54 specific, transcriptional regulator, Fis family  39.91 
 
 
483 aa  317  2e-85  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.14604  n/a   
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  38.62 
 
 
470 aa  317  2e-85  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_009457  VC0395_A0541  LuxO repressor protein  39.29 
 
 
455 aa  317  3e-85  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1495  sigma-54 dependent DNA-binding response regulator  37.78 
 
 
458 aa  317  4e-85  Geobacter sulfurreducens PCA  Bacteria  normal  0.301103  n/a   
 
 
-
 
NC_008577  Shewana3_2016  two component, sigma54 specific, Fis family transcriptional regulator  36.2 
 
 
493 aa  317  4e-85  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.00000590429 
 
 
-
 
NC_007498  Pcar_2145  two component signal transduction response regulator  37.31 
 
 
492 aa  316  5e-85  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  39.11 
 
 
448 aa  316  5e-85  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_2438  two component, sigma54 specific, Fis family transcriptional regulator  42 
 
 
467 aa  316  5e-85  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0495  two component, sigma-54 specific, Fis family transcriptional regulator  38.84 
 
 
456 aa  316  5e-85  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4192  two component, sigma-54 specific, Fis family transcriptional regulator  38.95 
 
 
454 aa  316  6e-85  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00227342  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  38.44 
 
 
473 aa  316  6e-85  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0732  two component, sigma54 specific, Fis family transcriptional regulator  41.2 
 
 
471 aa  316  7e-85  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.121473  normal 
 
 
-
 
NC_007519  Dde_0109  two component Fis family transcriptional regulator  39.96 
 
 
466 aa  315  8e-85  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  39.57 
 
 
461 aa  315  8e-85  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_011146  Gbem_2521  two component, sigma54 specific, transcriptional regulator, Fis family  38.8 
 
 
457 aa  315  9e-85  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  38.27 
 
 
452 aa  315  9.999999999999999e-85  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  40.49 
 
 
451 aa  315  9.999999999999999e-85  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2158  two component, sigma54 specific, transcriptional regulator, Fis family  38.58 
 
 
453 aa  314  1.9999999999999998e-84  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
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