More than 300 homologs were found in PanDaTox collection
for query gene BamMC406_3499 on replicon NC_010552
Organism: Burkholderia ambifaria MC40-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008391  Bamb_5330  two component LuxR family transcriptional regulator  99.01 
 
 
215 aa  394  1e-109  Burkholderia ambifaria AMMD  Bacteria  normal  0.858277  normal 
 
 
-
 
NC_010552  BamMC406_3499  two component LuxR family transcriptional regulator  100 
 
 
203 aa  396  1e-109  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.00551314 
 
 
-
 
NC_010515  Bcenmc03_3925  two component LuxR family transcriptional regulator  88.18 
 
 
215 aa  348  5e-95  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_3595  two component LuxR family transcriptional regulator  87.68 
 
 
215 aa  346  1e-94  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2520  two component LuxR family transcriptional regulator  88.56 
 
 
214 aa  343  8e-94  Burkholderia sp. 383  Bacteria  normal  0.943169  normal  0.310419 
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  68.81 
 
 
215 aa  279  2e-74  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal 
 
 
-
 
NC_010676  Bphyt_6314  two component transcriptional regulator, LuxR family  67.33 
 
 
216 aa  277  9e-74  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  68.88 
 
 
216 aa  276  2e-73  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  67.33 
 
 
215 aa  272  2.0000000000000002e-72  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  67.33 
 
 
215 aa  272  2.0000000000000002e-72  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.329832 
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  67.33 
 
 
215 aa  272  3e-72  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  67.33 
 
 
215 aa  271  6e-72  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal 
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  67.33 
 
 
215 aa  271  6e-72  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4256  two component LuxR family transcriptional regulator  66.83 
 
 
215 aa  270  8.000000000000001e-72  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.282152  normal 
 
 
-
 
NC_008061  Bcen_4002  two component LuxR family transcriptional regulator  67.33 
 
 
215 aa  270  1e-71  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1137  two component LuxR family transcriptional regulator  66.84 
 
 
214 aa  268  4e-71  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_006349  BMAA0703  LuxR family DNA-binding response regulator  65.84 
 
 
215 aa  267  7e-71  Burkholderia mallei ATCC 23344  Bacteria  normal  0.533722  n/a   
 
 
-
 
NC_008835  BMA10229_0760  LuxR family DNA-binding response regulator  65.84 
 
 
215 aa  267  7e-71  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1154  LuxR family DNA-binding response regulator  65.84 
 
 
215 aa  267  7e-71  Burkholderia pseudomallei 1106a  Bacteria  normal  0.324728  n/a   
 
 
-
 
NC_009079  BMA10247_A1725  LuxR family DNA-binding response regulator  65.84 
 
 
215 aa  267  7e-71  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1570  LuxR family DNA-binding response regulator  65.35 
 
 
215 aa  266  1e-70  Burkholderia thailandensis E264  Bacteria  normal  0.17909  n/a   
 
 
-
 
NC_009075  BURPS668_A1228  LuxR family DNA-binding response regulator  65.35 
 
 
215 aa  266  1e-70  Burkholderia pseudomallei 668  Bacteria  normal  0.0904383  n/a   
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  66.33 
 
 
215 aa  265  2e-70  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  66.33 
 
 
215 aa  265  2e-70  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_007650  BTH_II1247  LuxR family DNA-binding response regulator  66.33 
 
 
215 aa  266  2e-70  Burkholderia thailandensis E264  Bacteria  normal  0.32702  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  66.33 
 
 
215 aa  265  2e-70  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2427  LuxR family DNA-binding response regulator  65.84 
 
 
282 aa  265  2.9999999999999995e-70  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5813  two component LuxR family transcriptional regulator  67.35 
 
 
215 aa  263  2e-69  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_010087  Bmul_5903  two component LuxR family transcriptional regulator  61.73 
 
 
215 aa  258  4e-68  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.68975  normal  0.398777 
 
 
-
 
NC_010557  BamMC406_6196  two component LuxR family transcriptional regulator  60.2 
 
 
215 aa  252  2.0000000000000002e-66  Burkholderia ambifaria MC40-6  Bacteria  normal  0.280791  normal  0.522243 
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  61.22 
 
 
215 aa  245  4e-64  Burkholderia phymatum STM815  Bacteria  normal  normal  0.976007 
 
 
-
 
NC_007347  Reut_A1216  two component LuxR family transcriptional regulator  60.2 
 
 
215 aa  229  2e-59  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  60.94 
 
 
214 aa  219  3e-56  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_010678  Rpic_4426  two component transcriptional regulator, LuxR family  58.67 
 
 
215 aa  206  1e-52  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4559  two component transcriptional regulator, LuxR family  58.67 
 
 
215 aa  206  1e-52  Ralstonia pickettii 12D  Bacteria  normal  0.0669727  normal  0.0839611 
 
 
-
 
NC_003295  RSc0192  response regulator transcription regulator protein  58.16 
 
 
215 aa  203  1e-51  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.028731 
 
 
-
 
NC_010524  Lcho_0901  two component LuxR family transcriptional regulator  53.06 
 
 
235 aa  194  7e-49  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  47.42 
 
 
214 aa  188  5.999999999999999e-47  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_007298  Daro_1400  two component LuxR family transcriptional regulator  47.45 
 
 
216 aa  186  2e-46  Dechloromonas aromatica RCB  Bacteria  normal  0.973321  normal  0.0605156 
 
 
-
 
NC_006349  BMAA0615  LuxR family DNA-binding response regulator  54.64 
 
 
212 aa  185  5e-46  Burkholderia mallei ATCC 23344  Bacteria  normal  0.26011  n/a   
 
 
-
 
NC_008835  BMA10229_0853  LuxR family DNA-binding response regulator  54.12 
 
 
212 aa  183  1.0000000000000001e-45  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1818  LuxR family DNA-binding response regulator  54.12 
 
 
212 aa  183  1.0000000000000001e-45  Burkholderia mallei NCTC 10247  Bacteria  normal  0.204731  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1047  LuxR family DNA-binding response regulator  54.64 
 
 
212 aa  183  2.0000000000000003e-45  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2347  GerE family regulatory protein  54.64 
 
 
212 aa  183  2.0000000000000003e-45  Burkholderia pseudomallei 1710b  Bacteria  normal  0.925531  n/a   
 
 
-
 
NC_009075  BURPS668_A1132  LuxR family DNA-binding response regulator  54.64 
 
 
212 aa  183  2.0000000000000003e-45  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  50.51 
 
 
214 aa  178  4e-44  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal 
 
 
-
 
NC_007948  Bpro_1167  two component LuxR family transcriptional regulator  49.49 
 
 
213 aa  175  3e-43  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1572  two component LuxR family transcriptional regulator  46.7 
 
 
218 aa  166  2e-40  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.972408 
 
 
-
 
NC_008825  Mpe_A0581  two component LuxR family transcriptional regulator  44.39 
 
 
210 aa  165  5e-40  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_0243  LuxR family DNA-binding response regulator  45.41 
 
 
218 aa  164  9e-40  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0231  LuxR family DNA-binding response regulator  45.41 
 
 
218 aa  164  9e-40  Burkholderia pseudomallei 668  Bacteria  normal  0.214964  n/a   
 
 
-
 
NC_007434  BURPS1710b_0425  LuxR family DNA-binding response regulator  45.41 
 
 
218 aa  164  9e-40  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0536791  n/a   
 
 
-
 
NC_009080  BMA10247_3391  LuxR family DNA-binding response regulator  45.41 
 
 
218 aa  164  9e-40  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0209  LuxR family DNA-binding response regulator  45.92 
 
 
218 aa  164  9e-40  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2955  LuxR family DNA-binding response regulator  45.41 
 
 
218 aa  164  9e-40  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2133  LuxR family DNA-binding response regulator  45.41 
 
 
218 aa  164  9e-40  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA3290  LuxR family DNA-binding response regulator  45.41 
 
 
455 aa  162  2.0000000000000002e-39  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7764  two component LuxR family transcriptional regulator  43.65 
 
 
210 aa  163  2.0000000000000002e-39  Burkholderia phymatum STM815  Bacteria  normal  0.527093  normal 
 
 
-
 
NC_007404  Tbd_1588  two component LuxR family transcriptional regulator  43.37 
 
 
215 aa  163  2.0000000000000002e-39  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.731747  normal  0.987016 
 
 
-
 
NC_007614  Nmul_A1235  two component LuxR family transcriptional regulator  44.39 
 
 
211 aa  162  3e-39  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0292  response regulator transcription regulator protein  44.9 
 
 
210 aa  162  4.0000000000000004e-39  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2966  two component LuxR family transcriptional regulator  44.39 
 
 
218 aa  162  5.0000000000000005e-39  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.288922 
 
 
-
 
NC_008390  Bamb_3100  two component LuxR family transcriptional regulator  44.39 
 
 
218 aa  162  5.0000000000000005e-39  Burkholderia ambifaria AMMD  Bacteria  normal  0.650822  n/a   
 
 
-
 
NC_010625  Bphy_6558  two component LuxR family transcriptional regulator  43.15 
 
 
210 aa  161  6e-39  Burkholderia phymatum STM815  Bacteria  normal  normal  0.458284 
 
 
-
 
NC_007973  Rmet_0090  two component LuxR family transcriptional regulator  43.88 
 
 
210 aa  161  8.000000000000001e-39  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0153  two component transcriptional regulator, LuxR family  44.9 
 
 
210 aa  160  9e-39  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II1634  LuxR family DNA-binding response regulator  52.04 
 
 
214 aa  160  1e-38  Burkholderia thailandensis E264  Bacteria  normal  0.414245  n/a   
 
 
-
 
NC_010682  Rpic_0145  two component transcriptional regulator, LuxR family  44.39 
 
 
210 aa  159  2e-38  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0121  two component LuxR family transcriptional regulator  43.88 
 
 
210 aa  159  2e-38  Ralstonia eutropha JMP134  Bacteria  normal  0.830531  n/a   
 
 
-
 
NC_010676  Bphyt_6235  two component transcriptional regulator, LuxR family  42.21 
 
 
210 aa  158  6e-38  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.612124 
 
 
-
 
NC_007517  Gmet_2158  two component LuxR family transcriptional regulator  41.84 
 
 
210 aa  158  6e-38  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.0301144 
 
 
-
 
NC_007947  Mfla_0945  two component LuxR family transcriptional regulator  38.78 
 
 
210 aa  156  2e-37  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1089  two component LuxR family transcriptional regulator  38.78 
 
 
210 aa  156  2e-37  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0374  two component transcriptional regulator, LuxR family  44.39 
 
 
218 aa  155  3e-37  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1146  response regulator receiver  59.57 
 
 
209 aa  155  3e-37  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4382  two component LuxR family transcriptional regulator  41.84 
 
 
209 aa  155  3e-37  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  44.39 
 
 
211 aa  155  3e-37  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010622  Bphy_0097  two component LuxR family transcriptional regulator  43.37 
 
 
218 aa  155  4e-37  Burkholderia phymatum STM815  Bacteria  normal  0.605108  normal 
 
 
-
 
NC_007947  Mfla_1987  two component LuxR family transcriptional regulator  41.33 
 
 
215 aa  155  4e-37  Methylobacillus flagellatus KT  Bacteria  normal  0.0949899  normal 
 
 
-
 
NC_007510  Bcep18194_A6403  two component LuxR family transcriptional regulator  42.86 
 
 
271 aa  155  5.0000000000000005e-37  Burkholderia sp. 383  Bacteria  normal  normal  0.285313 
 
 
-
 
NC_010084  Bmul_3052  two component LuxR family transcriptional regulator  43.37 
 
 
218 aa  154  6e-37  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.317078  normal 
 
 
-
 
NC_007614  Nmul_A1336  two component LuxR family transcriptional regulator  40.82 
 
 
208 aa  154  7e-37  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2562  response regulator  39 
 
 
214 aa  154  9e-37  Shewanella baltica OS155  Bacteria  normal  0.0171044  n/a   
 
 
-
 
NC_009997  Sbal195_2677  response regulator  39 
 
 
214 aa  154  9e-37  Shewanella baltica OS195  Bacteria  normal  0.0738952  normal  0.957867 
 
 
-
 
NC_011663  Sbal223_1782  response regulator  39 
 
 
214 aa  154  9e-37  Shewanella baltica OS223  Bacteria  normal  0.0381154  hitchhiker  0.0000000750596 
 
 
-
 
NC_009665  Shew185_2600  response regulator  39 
 
 
214 aa  154  9e-37  Shewanella baltica OS185  Bacteria  hitchhiker  0.000388579  n/a   
 
 
-
 
NC_008577  Shewana3_1608  response regulator  39 
 
 
214 aa  154  1e-36  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000660452  normal  0.150334 
 
 
-
 
NC_008752  Aave_3862  two component LuxR family transcriptional regulator  39.29 
 
 
210 aa  153  1e-36  Acidovorax citrulli AAC00-1  Bacteria  normal  0.734244  normal 
 
 
-
 
NC_007948  Bpro_0881  two component LuxR family transcriptional regulator  38.27 
 
 
210 aa  154  1e-36  Polaromonas sp. JS666  Bacteria  normal  0.464883  normal  0.594453 
 
 
-
 
NC_008321  Shewmr4_1547  response regulator  39 
 
 
214 aa  154  1e-36  Shewanella sp. MR-4  Bacteria  hitchhiker  0.0000288339  normal 
 
 
-
 
NC_008322  Shewmr7_1614  response regulator  39 
 
 
214 aa  153  1e-36  Shewanella sp. MR-7  Bacteria  unclonable  0.000000746753  normal  0.505035 
 
 
-
 
NC_011992  Dtpsy_2832  two component transcriptional regulator, LuxR family  39.8 
 
 
210 aa  152  2e-36  Acidovorax ebreus TPSY  Bacteria  normal  0.988429  n/a   
 
 
-
 
NC_008700  Sama_1607  response regulator  38.27 
 
 
214 aa  153  2e-36  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00000106395  normal 
 
 
-
 
NC_010508  Bcenmc03_3074  two component LuxR family transcriptional regulator  42.35 
 
 
218 aa  153  2e-36  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2441  two component LuxR family transcriptional regulator  42.35 
 
 
218 aa  153  2e-36  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_3055  two component LuxR family transcriptional regulator  42.35 
 
 
218 aa  153  2e-36  Burkholderia cenocepacia HI2424  Bacteria  normal  0.327843  n/a   
 
 
-
 
NC_008782  Ajs_3509  two component LuxR family transcriptional regulator  39.8 
 
 
239 aa  152  2.9999999999999998e-36  Acidovorax sp. JS42  Bacteria  normal  0.325902  normal 
 
 
-
 
NC_008825  Mpe_A2902  two component LuxR family transcriptional regulator  42.13 
 
 
212 aa  152  2.9999999999999998e-36  Methylibium petroleiphilum PM1  Bacteria  normal  0.255362  normal 
 
 
-
 
NC_009438  Sputcn32_1639  response regulator  38 
 
 
226 aa  152  2.9999999999999998e-36  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00137195  n/a   
 
 
-
 
NC_007951  Bxe_A4347  two component LuxR family transcriptional regulator  42.86 
 
 
218 aa  152  2.9999999999999998e-36  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.705126 
 
 
-
 
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