10 homologs were found in PanDaTox collection
for query gene BBta_6628 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_6628  hypothetical protein  100 
 
 
82 aa  167  4e-41  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.273077 
 
 
-
 
NC_011989  Avi_2000  hypothetical protein  45.78 
 
 
83 aa  82  0.000000000000002  Agrobacterium vitis S4  Bacteria  normal  0.23181  n/a   
 
 
-
 
NC_010172  Mext_2944  hypothetical protein  56.25 
 
 
68 aa  72.4  0.000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.110723 
 
 
-
 
NC_011757  Mchl_3171  hypothetical protein  56.25 
 
 
68 aa  72.4  0.000000000002  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00924455  normal  0.507561 
 
 
-
 
NC_009049  Rsph17029_2268  XRE family transcriptional regulator  47.37 
 
 
201 aa  70.5  0.000000000008  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.924655  normal  0.398688 
 
 
-
 
NC_010725  Mpop_4743  plasmid stabilization system  48.81 
 
 
86 aa  69.7  0.00000000001  Methylobacterium populi BJ001  Bacteria  normal  0.786175  normal  0.0196612 
 
 
-
 
NC_010511  M446_4070  plasmid stabilization system protein  46.99 
 
 
80 aa  58.5  0.00000003  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1680  hypothetical protein  43.59 
 
 
103 aa  57  0.00000009  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.521078 
 
 
-
 
NC_007925  RPC_3073  plasmid stabilization system protein  38.55 
 
 
83 aa  51.2  0.000005  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.2431  normal  0.0660854 
 
 
-
 
NC_011894  Mnod_0603  plasmid stabilization system  40.96 
 
 
103 aa  50.8  0.000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.837316  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>