More than 300 homologs were found in PanDaTox collection
for query gene BBta_2094 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_2094  LysR family transcriptional regulator  100 
 
 
329 aa  663    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2069  LysR family transcriptional regulator  39.93 
 
 
309 aa  203  3e-51  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.156662 
 
 
-
 
NC_007494  RSP_3464  LysR family transcriptional regulator  39.22 
 
 
309 aa  201  9.999999999999999e-51  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.26806  n/a   
 
 
-
 
NC_009050  Rsph17029_3109  LysR family transcriptional regulator  39.22 
 
 
309 aa  201  9.999999999999999e-51  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.1017  normal  0.129161 
 
 
-
 
NC_007434  BURPS1710b_2182  LysR family transcriptional regulator  34.01 
 
 
296 aa  174  1.9999999999999998e-42  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2041  LysR family transcriptional regulator  34.01 
 
 
296 aa  174  1.9999999999999998e-42  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B3014  LysR family transcriptional regulator  34.38 
 
 
296 aa  169  5e-41  Burkholderia sp. 383  Bacteria  normal  normal  0.932582 
 
 
-
 
NC_007952  Bxe_B2142  LysR family transcriptional regulator  32.81 
 
 
296 aa  158  1e-37  Burkholderia xenovorans LB400  Bacteria  normal  0.90528  normal 
 
 
-
 
NC_012853  Rleg_5703  transcriptional regulator, LysR family  33 
 
 
295 aa  155  9e-37  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.351778 
 
 
-
 
NC_009485  BBta_2111  LysR family transcriptional regulator  35.03 
 
 
298 aa  152  7e-36  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0199  LysR family transcriptional regulator  33.1 
 
 
297 aa  151  2e-35  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.493239 
 
 
-
 
NC_007974  Rmet_4445  LysR family transcriptional regulator  34.04 
 
 
296 aa  150  3e-35  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.400594 
 
 
-
 
NC_010087  Bmul_5993  LysR family transcriptional regulator  30.14 
 
 
304 aa  149  5e-35  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.248146 
 
 
-
 
NC_009475  BBta_p0050  LysR family transcriptional regulator  32.42 
 
 
310 aa  146  6e-34  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_008062  Bcen_5699  LysR family transcriptional regulator  29.79 
 
 
304 aa  145  9e-34  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6063  LysR family transcriptional regulator  29.79 
 
 
304 aa  145  9e-34  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2435  LysR family transcriptional regulator  34.62 
 
 
306 aa  143  5e-33  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.736044 
 
 
-
 
NC_008688  Pden_4972  LysR family transcriptional regulator  31.91 
 
 
306 aa  142  7e-33  Paracoccus denitrificans PD1222  Bacteria  normal  0.884957  normal  0.156049 
 
 
-
 
NC_009620  Smed_4203  LysR family transcriptional regulator  30.07 
 
 
306 aa  142  9.999999999999999e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6547  LysR family transcriptional regulator  29.11 
 
 
304 aa  141  1.9999999999999998e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.94219  normal  0.418859 
 
 
-
 
NC_010002  Daci_4993  LysR family transcriptional regulator  34.22 
 
 
303 aa  139  7e-32  Delftia acidovorans SPH-1  Bacteria  normal  0.0133249  normal 
 
 
-
 
NC_010511  M446_3860  LysR family transcriptional regulator  33.45 
 
 
306 aa  139  7e-32  Methylobacterium sp. 4-46  Bacteria  normal  0.722283  normal 
 
 
-
 
NC_008044  TM1040_0848  LysR family transcriptional regulator  30.77 
 
 
302 aa  139  7.999999999999999e-32  Ruegeria sp. TM1040  Bacteria  normal  0.0228944  normal 
 
 
-
 
NC_010087  Bmul_5998  LysR family transcriptional regulator  30.39 
 
 
304 aa  138  1e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4752  LysR family transcriptional regulator  31.4 
 
 
305 aa  138  1e-31  Methylobacterium sp. 4-46  Bacteria  normal  0.222249  normal 
 
 
-
 
NC_007951  Bxe_A1384  LysR family transcriptional regulator  29.82 
 
 
309 aa  138  1e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.684256  normal  0.634474 
 
 
-
 
NC_007948  Bpro_4387  LysR family transcriptional regulator  30 
 
 
292 aa  137  2e-31  Polaromonas sp. JS666  Bacteria  normal  normal  0.814713 
 
 
-
 
NC_008048  Sala_2416  LysR family transcriptional regulator  33.92 
 
 
301 aa  137  2e-31  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.312815 
 
 
-
 
NC_013457  VEA_000034  transcriptional regulator LysR family protein  29.24 
 
 
304 aa  136  6.0000000000000005e-31  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000511263  n/a   
 
 
-
 
NC_010676  Bphyt_6343  transcriptional regulator, LysR family  32.35 
 
 
300 aa  135  7.000000000000001e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0119  transcriptional regulator, LysR family  28.04 
 
 
316 aa  135  8e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.174937  n/a   
 
 
-
 
NC_008786  Veis_1436  LysR family transcriptional regulator  28.08 
 
 
313 aa  135  9.999999999999999e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.636393 
 
 
-
 
NC_007347  Reut_A2590  LysR family transcriptional regulator  32.18 
 
 
338 aa  134  1.9999999999999998e-30  Ralstonia eutropha JMP134  Bacteria  normal  0.614241  n/a   
 
 
-
 
NC_007973  Rmet_0699  LysR family transcriptional regulator  34.01 
 
 
317 aa  134  1.9999999999999998e-30  Cupriavidus metallidurans CH34  Bacteria  normal  0.0791561  normal 
 
 
-
 
NC_009511  Swit_2619  LysR family transcriptional regulator  29.83 
 
 
297 aa  134  3e-30  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.857355 
 
 
-
 
NC_009485  BBta_6120  LysR family transcriptional regulator  26.8 
 
 
313 aa  132  7.999999999999999e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.387063 
 
 
-
 
NC_010625  Bphy_7048  LysR family transcriptional regulator  30.21 
 
 
320 aa  131  1.0000000000000001e-29  Burkholderia phymatum STM815  Bacteria  normal  normal  0.617294 
 
 
-
 
NC_010002  Daci_0067  LysR family transcriptional regulator  30.23 
 
 
301 aa  131  2.0000000000000002e-29  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1898  transcriptional regulator, LysR family  29.86 
 
 
322 aa  131  2.0000000000000002e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  0.113483  normal  0.573852 
 
 
-
 
NC_011989  Avi_2704  Transcriptional regulator  27.84 
 
 
304 aa  130  3e-29  Agrobacterium vitis S4  Bacteria  normal  0.321039  n/a   
 
 
-
 
NC_010511  M446_6146  LysR family transcriptional regulator  30.51 
 
 
302 aa  130  4.0000000000000003e-29  Methylobacterium sp. 4-46  Bacteria  normal  0.69148  normal 
 
 
-
 
NC_007952  Bxe_B2701  LysR family transcriptional regulator  29.76 
 
 
317 aa  130  4.0000000000000003e-29  Burkholderia xenovorans LB400  Bacteria  normal  0.992427  normal 
 
 
-
 
NC_009654  Mmwyl1_1142  LysR family transcriptional regulator  29.12 
 
 
302 aa  129  7.000000000000001e-29  Marinomonas sp. MWYL1  Bacteria  normal  0.315341  normal 
 
 
-
 
NC_008044  TM1040_0354  LysR family transcriptional regulator  28.97 
 
 
310 aa  129  7.000000000000001e-29  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4381  LysR family transcriptional regulator  31.97 
 
 
303 aa  128  1.0000000000000001e-28  Polaromonas sp. JS666  Bacteria  normal  normal  0.75839 
 
 
-
 
NC_008752  Aave_1935  LysR family transcriptional regulator  31.89 
 
 
307 aa  128  1.0000000000000001e-28  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0403569 
 
 
-
 
NC_008242  Meso_4369  LysR family transcriptional regulator  31.91 
 
 
304 aa  128  1.0000000000000001e-28  Chelativorans sp. BNC1  Bacteria  normal  0.536466  n/a   
 
 
-
 
NC_008242  Meso_4432  LysR family transcriptional regulator  31.52 
 
 
323 aa  128  2.0000000000000002e-28  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_4707  LysR family transcriptional regulator  31.03 
 
 
294 aa  127  2.0000000000000002e-28  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0240771 
 
 
-
 
NC_007348  Reut_B3821  regulatory protein, LysR:LysR, substrate-binding  29.41 
 
 
301 aa  126  5e-28  Ralstonia eutropha JMP134  Bacteria  normal  0.503579  n/a   
 
 
-
 
NC_009656  PSPA7_5825  LysR family transcriptional regulator  32.73 
 
 
305 aa  126  5e-28  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4343  LysR family transcriptional regulator  29.31 
 
 
301 aa  125  8.000000000000001e-28  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_67170  LysR family transcriptional regulator  31.08 
 
 
318 aa  125  9e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.161893  normal 
 
 
-
 
NC_004578  PSPTO_0212  transcriptional activator LysR  29.11 
 
 
311 aa  124  2e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2546  LysR family transcriptional regulator  31.46 
 
 
298 aa  122  6e-27  Burkholderia xenovorans LB400  Bacteria  normal  0.715041  normal  0.706169 
 
 
-
 
CP001509  ECD_02687  DNA-binding transcriptional dual regulator  29.74 
 
 
311 aa  122  9.999999999999999e-27  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0876  DNA-binding transcriptional regulator LysR  29.74 
 
 
311 aa  122  9.999999999999999e-27  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6638  transcriptional regulator, LysR family  33.71 
 
 
301 aa  122  9.999999999999999e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.863309  normal  0.341434 
 
 
-
 
NC_010658  SbBS512_E3022  DNA-binding transcriptional regulator LysR  29.74 
 
 
311 aa  121  9.999999999999999e-27  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3726  DNA-binding transcriptional regulator LysR  31.97 
 
 
315 aa  121  9.999999999999999e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.161263 
 
 
-
 
NC_009801  EcE24377A_3161  DNA-binding transcriptional regulator LysR  29.74 
 
 
311 aa  122  9.999999999999999e-27  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2986  DNA-binding transcriptional regulator LysR  29.74 
 
 
311 aa  122  9.999999999999999e-27  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1998  LysR family transcriptional regulator  28.76 
 
 
299 aa  121  9.999999999999999e-27  Polaromonas sp. JS666  Bacteria  normal  normal  0.499289 
 
 
-
 
NC_007948  Bpro_4395  LysR family transcriptional regulator  28.87 
 
 
301 aa  122  9.999999999999999e-27  Polaromonas sp. JS666  Bacteria  normal  0.322468  normal  0.503505 
 
 
-
 
NC_012892  B21_02648  hypothetical protein  29.74 
 
 
311 aa  122  9.999999999999999e-27  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4411  LysR family transcriptional regulator  28.08 
 
 
303 aa  122  9.999999999999999e-27  Polaromonas sp. JS666  Bacteria  normal  0.753366  normal  0.429795 
 
 
-
 
CP001637  EcDH1_0851  transcriptional regulator, LysR family  29.41 
 
 
311 aa  121  1.9999999999999998e-26  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6544  transcriptional regulator, LysR family  28.33 
 
 
305 aa  121  1.9999999999999998e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0395202 
 
 
-
 
NC_011353  ECH74115_4109  DNA-binding transcriptional regulator LysR  29.41 
 
 
311 aa  120  1.9999999999999998e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  0.0000450007 
 
 
-
 
NC_013457  VEA_000677  LysR-family transcriptional regulator  30.85 
 
 
293 aa  120  1.9999999999999998e-26  Vibrio sp. Ex25  Bacteria  normal  0.708378  n/a   
 
 
-
 
NC_012791  Vapar_1544  transcriptional regulator, LysR family  31.08 
 
 
300 aa  121  1.9999999999999998e-26  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2988  DNA-binding transcriptional regulator LysR  29.08 
 
 
311 aa  120  3e-26  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.0261246 
 
 
-
 
NC_010682  Rpic_2760  transcriptional regulator, LysR family  30.99 
 
 
321 aa  120  3.9999999999999996e-26  Ralstonia pickettii 12J  Bacteria  normal  normal  0.436538 
 
 
-
 
NC_007974  Rmet_4442  LysR family transcriptional regulator  30.58 
 
 
334 aa  120  3.9999999999999996e-26  Cupriavidus metallidurans CH34  Bacteria  normal  0.0413506  normal  0.600336 
 
 
-
 
NC_003295  RSc2497  transcription regulator protein  30.99 
 
 
321 aa  119  7.999999999999999e-26  Ralstonia solanacearum GMI1000  Bacteria  normal  0.82783  normal  0.625013 
 
 
-
 
NC_012856  Rpic12D_2357  transcriptional regulator, LysR family  30.99 
 
 
321 aa  119  9e-26  Ralstonia pickettii 12D  Bacteria  normal  0.0418601  normal  0.167767 
 
 
-
 
NC_012791  Vapar_4236  transcriptional regulator, LysR family  29.9 
 
 
306 aa  118  9.999999999999999e-26  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2441  LysR family transcriptional regulator  30.74 
 
 
301 aa  118  9.999999999999999e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.96584 
 
 
-
 
NC_007948  Bpro_4421  LysR family transcriptional regulator  32.68 
 
 
304 aa  119  9.999999999999999e-26  Polaromonas sp. JS666  Bacteria  normal  0.655491  normal 
 
 
-
 
NC_010676  Bphyt_6292  transcriptional regulator, LysR family  31.23 
 
 
303 aa  118  9.999999999999999e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1644  regulatory protein, LysR:LysR, substrate-binding  31.88 
 
 
302 aa  117  1.9999999999999998e-25  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1838  LysR family transcriptional regulator  30 
 
 
318 aa  117  1.9999999999999998e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.69135 
 
 
-
 
NC_007802  Jann_1407  LysR family transcriptional regulator  28.07 
 
 
344 aa  117  1.9999999999999998e-25  Jannaschia sp. CCS1  Bacteria  normal  normal  0.0833584 
 
 
-
 
NC_011982  Avi_8309  transcriptional regulator LysR family  30.99 
 
 
300 aa  117  1.9999999999999998e-25  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_7088  DNA-binding transcriptional regulator LysR  29.07 
 
 
309 aa  117  3e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0496  LysR family transcriptional regulator  27.59 
 
 
315 aa  117  3e-25  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009669  Oant_4616  LysR family transcriptional regulator  29.66 
 
 
289 aa  117  3e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3634  LysR family transcriptional regulator  27.56 
 
 
304 aa  117  3.9999999999999997e-25  Ruegeria sp. TM1040  Bacteria  normal  normal  0.246418 
 
 
-
 
NC_011981  Avi_7396  Transcriptional regulator  28.15 
 
 
297 aa  117  3.9999999999999997e-25  Agrobacterium vitis S4  Bacteria  normal  0.709918  n/a   
 
 
-
 
NC_010159  YpAngola_A3251  DNA-binding transcriptional regulator LysR  25.48 
 
 
313 aa  115  7.999999999999999e-25  Yersinia pestis Angola  Bacteria  normal  hitchhiker  0.00000182985 
 
 
-
 
NC_009708  YpsIP31758_0970  DNA-binding transcriptional regulator LysR  25.48 
 
 
313 aa  115  7.999999999999999e-25  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2190  LysR family transcriptional regulator  29.7 
 
 
297 aa  115  1.0000000000000001e-24  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.769998 
 
 
-
 
NC_012917  PC1_3487  DNA-binding transcriptional regulator LysR  26.03 
 
 
307 aa  115  1.0000000000000001e-24  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.711753  n/a   
 
 
-
 
NC_011887  Mnod_8014  transcriptional regulator, LysR family  28.28 
 
 
300 aa  114  2.0000000000000002e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.865808  n/a   
 
 
-
 
NC_007492  Pfl01_5291  LysR family transcriptional regulator  30.26 
 
 
303 aa  114  2.0000000000000002e-24  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.464968 
 
 
-
 
NC_007511  Bcep18194_B0838  DNA-binding transcriptional regulator LysR  30.03 
 
 
304 aa  114  2.0000000000000002e-24  Burkholderia sp. 383  Bacteria  normal  normal  0.101081 
 
 
-
 
NC_008228  Patl_2788  LysR family transcriptional regulator  26.86 
 
 
292 aa  114  2.0000000000000002e-24  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1023  DNA-binding transcriptional regulator LysR  25.48 
 
 
313 aa  113  4.0000000000000004e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0224  LysR family transcriptional regulator  27.87 
 
 
309 aa  113  4.0000000000000004e-24  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4770  DNA-binding transcriptional regulator LysR  30.49 
 
 
304 aa  113  5e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
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