More than 300 homologs were found in PanDaTox collection
for query gene BBta_1272 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_1272  LysR family transcriptional regulator  100 
 
 
295 aa  592  1e-168  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2041  transcriptional regulator, LysR family  44.19 
 
 
301 aa  231  1e-59  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.416222 
 
 
-
 
NC_010172  Mext_1722  LysR substrate-binding  43.82 
 
 
301 aa  229  3e-59  Methylobacterium extorquens PA1  Bacteria  normal  0.0793479  normal 
 
 
-
 
NC_010725  Mpop_1092  transcriptional regulator, LysR family  43.45 
 
 
301 aa  227  2e-58  Methylobacterium populi BJ001  Bacteria  normal  0.0509948  normal  0.0429857 
 
 
-
 
NC_007347  Reut_A1293  LysR family transcriptional regulator  42.47 
 
 
320 aa  222  6e-57  Ralstonia eutropha JMP134  Bacteria  decreased coverage  0.00171024  n/a   
 
 
-
 
NC_010002  Daci_1590  LysR family transcriptional regulator  40.7 
 
 
302 aa  220  3e-56  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1472  LysR family transcriptional regulator  40.96 
 
 
300 aa  219  3.9999999999999997e-56  Burkholderia sp. 383  Bacteria  normal  0.166956  normal  0.322339 
 
 
-
 
NC_011988  Avi_5409  LysR family protein  43.14 
 
 
300 aa  207  1e-52  Agrobacterium vitis S4  Bacteria  normal  0.152867  n/a   
 
 
-
 
NC_007973  Rmet_1185  LysR family transcriptional regulator  40.35 
 
 
310 aa  207  2e-52  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00000000537468  normal 
 
 
-
 
NC_012848  Rleg_4662  transcriptional regulator, LysR family  38.28 
 
 
329 aa  195  6e-49  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1679  transcriptional regulator, LysR family  37.5 
 
 
316 aa  193  4e-48  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.409194  normal  0.896834 
 
 
-
 
NC_011989  Avi_3548  transcriptional regulator LysR family  36.03 
 
 
318 aa  189  5e-47  Agrobacterium vitis S4  Bacteria  normal  0.280114  n/a   
 
 
-
 
NC_008463  PA14_02870  putative transcriptional regulator  34.63 
 
 
313 aa  167  2e-40  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00238694 
 
 
-
 
NC_009656  PSPA7_0319  putative transcriptional regulator  35.8 
 
 
313 aa  165  6.9999999999999995e-40  Pseudomonas aeruginosa PA7  Bacteria  normal  0.404994  n/a   
 
 
-
 
NC_011757  Mchl_2072  transcriptional regulator, LysR family  35.66 
 
 
305 aa  163  3e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0751025 
 
 
-
 
NC_010505  Mrad2831_4570  LysR family transcriptional regulator  35.95 
 
 
298 aa  160  3e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1817  LysR family transcriptional regulator  36.19 
 
 
310 aa  157  2e-37  Polaromonas sp. JS666  Bacteria  normal  0.330978  hitchhiker  0.00360584 
 
 
-
 
NC_010002  Daci_0548  LysR family transcriptional regulator  35.2 
 
 
316 aa  157  2e-37  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A1340  LysR family transcriptional regulator  35.32 
 
 
317 aa  156  4e-37  Burkholderia pseudomallei 668  Bacteria  normal  0.875316  n/a   
 
 
-
 
NC_008709  Ping_2416  transcriptional regulator, substrate-binding of LysR family protein  33.47 
 
 
297 aa  155  6e-37  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.0000387203  decreased coverage  0.000000509864 
 
 
-
 
NC_009078  BURPS1106A_A1264  LysR family transcriptional regulator  35.32 
 
 
317 aa  155  6e-37  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3652  transcriptional regulator, LysR family  35.16 
 
 
301 aa  154  2e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0887356  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2518  LysR family regulatory protein  35.32 
 
 
311 aa  154  2e-36  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4382  LysR family transcriptional regulator  32.41 
 
 
300 aa  154  2.9999999999999998e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0778  LysR family transcriptional regulator  39.91 
 
 
306 aa  153  2.9999999999999998e-36  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0178  LysR family transcriptional regulator  38.07 
 
 
303 aa  153  4e-36  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.758946 
 
 
-
 
NC_011761  AFE_0761  transcriptional regulator, LysR family  33.45 
 
 
316 aa  152  5e-36  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.211674  n/a   
 
 
-
 
NC_011206  Lferr_0907  transcriptional regulator, LysR family  33.45 
 
 
302 aa  152  5.9999999999999996e-36  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4144  LysR family transcriptional regulator  32.96 
 
 
307 aa  152  8e-36  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1259  transcriptional regulator, LysR family  33.99 
 
 
300 aa  150  2e-35  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_5851  LysR family transcriptional regulator  34.8 
 
 
321 aa  150  2e-35  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.121988  n/a   
 
 
-
 
NC_008544  Bcen2424_6218  LysR family transcriptional regulator  34.8 
 
 
321 aa  150  2e-35  Burkholderia cenocepacia HI2424  Bacteria  normal  decreased coverage  0.00215178 
 
 
-
 
NC_010676  Bphyt_4629  transcriptional regulator, LysR family  38.3 
 
 
332 aa  150  3e-35  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.31234 
 
 
-
 
NC_010511  M446_0395  LysR family transcriptional regulator  34.67 
 
 
315 aa  149  4e-35  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.662274 
 
 
-
 
NC_007509  Bcep18194_C6622  LysR family transcriptional regulator  33.56 
 
 
318 aa  149  5e-35  Burkholderia sp. 383  Bacteria  normal  0.536281  normal  0.255489 
 
 
-
 
NC_011988  Avi_5640  transcriptional regulator LysR family  32.55 
 
 
300 aa  149  8e-35  Agrobacterium vitis S4  Bacteria  normal  0.203557  n/a   
 
 
-
 
NC_010512  Bcenmc03_6694  LysR family transcriptional regulator  34.46 
 
 
321 aa  147  2.0000000000000003e-34  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.32621 
 
 
-
 
NC_008786  Veis_3501  LysR family transcriptional regulator  31.21 
 
 
304 aa  147  3e-34  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.829127  normal  0.0458146 
 
 
-
 
NC_009654  Mmwyl1_3825  LysR family transcriptional regulator  32.18 
 
 
306 aa  146  3e-34  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.363475 
 
 
-
 
NC_007348  Reut_B5280  LysR family transcriptional regulator  33.56 
 
 
318 aa  146  5e-34  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_4492  transcriptional regulator, LysR family  31.67 
 
 
306 aa  145  6e-34  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.957194 
 
 
-
 
NC_012880  Dd703_2928  transcriptional regulator, LysR family  33.18 
 
 
309 aa  144  2e-33  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1239  transcriptional regulator, LysR family  35.29 
 
 
307 aa  144  2e-33  Methylobacterium populi BJ001  Bacteria  normal  0.138802  normal  0.188644 
 
 
-
 
NC_008786  Veis_4735  LysR family transcriptional regulator  33.07 
 
 
305 aa  144  2e-33  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.52327  normal 
 
 
-
 
NC_007336  Reut_C6370  LysR family transcriptional regulator  33.78 
 
 
309 aa  143  3e-33  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3118  transcriptional regulator, LysR family  34 
 
 
313 aa  143  3e-33  Dickeya zeae Ech1591  Bacteria  normal  0.752623  n/a   
 
 
-
 
NC_011988  Avi_5425  Transcriptional regulator  32.88 
 
 
316 aa  142  4e-33  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3236  transcriptional regulator, LysR family  35.44 
 
 
307 aa  143  4e-33  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3756  LysR family transcriptional regulator  32.42 
 
 
301 aa  142  7e-33  Jannaschia sp. CCS1  Bacteria  normal  0.231956  normal 
 
 
-
 
NC_007347  Reut_A1656  regulatory protein, LysR:LysR, substrate-binding  31.78 
 
 
321 aa  141  9.999999999999999e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.227102  n/a   
 
 
-
 
NC_011369  Rleg2_4202  transcriptional regulator, LysR family  34.22 
 
 
302 aa  141  9.999999999999999e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3501  transcriptional regulator, LysR family  35.91 
 
 
310 aa  139  4.999999999999999e-32  Dickeya dadantii Ech703  Bacteria  normal  0.7374  n/a   
 
 
-
 
NC_010002  Daci_2826  LysR family transcriptional regulator  33.71 
 
 
302 aa  139  6e-32  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.123766 
 
 
-
 
NC_010511  M446_2975  LysR family transcriptional regulator  32.81 
 
 
297 aa  138  1e-31  Methylobacterium sp. 4-46  Bacteria  normal  0.819316  normal  0.0269268 
 
 
-
 
NC_008390  Bamb_1487  LysR family transcriptional regulator  34.04 
 
 
317 aa  137  2e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.235813  n/a   
 
 
-
 
NC_010623  Bphy_3187  LysR family transcriptional regulator  29.62 
 
 
307 aa  135  6.0000000000000005e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1674  transcriptional regulator, LysR family  34.08 
 
 
312 aa  134  9.999999999999999e-31  Variovorax paradoxus S110  Bacteria  normal  0.247325  n/a   
 
 
-
 
NC_012912  Dd1591_3624  transcriptional regulator, LysR family  34.55 
 
 
310 aa  134  1.9999999999999998e-30  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1507  LysR family transcriptional regulator  33.62 
 
 
317 aa  134  1.9999999999999998e-30  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5122  transcriptional regulator, LysR family  31.95 
 
 
298 aa  132  9e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0711  transcriptional regulator, LysR family  31.4 
 
 
304 aa  131  1.0000000000000001e-29  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1765  transcriptional regulator, LysR family  33.62 
 
 
320 aa  130  2.0000000000000002e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  0.348978  normal 
 
 
-
 
NC_007778  RPB_0140  LysR family transcriptional regulator  32.31 
 
 
300 aa  130  2.0000000000000002e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.273009  normal 
 
 
-
 
NC_010084  Bmul_1646  LysR family transcriptional regulator  32.77 
 
 
317 aa  129  4.0000000000000003e-29  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0223  transcriptional regulator, LysR family  30.04 
 
 
308 aa  129  4.0000000000000003e-29  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.0239924 
 
 
-
 
NC_007948  Bpro_1720  LysR family transcriptional regulator  32.85 
 
 
304 aa  129  6e-29  Polaromonas sp. JS666  Bacteria  normal  normal  0.501523 
 
 
-
 
NC_010678  Rpic_3921  transcriptional regulator, LysR family  30.74 
 
 
305 aa  129  7.000000000000001e-29  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4035  transcriptional regulator, LysR family  30.74 
 
 
305 aa  129  7.000000000000001e-29  Ralstonia pickettii 12D  Bacteria  normal  0.176512  normal 
 
 
-
 
NC_007510  Bcep18194_A4729  LysR family transcriptional regulator  32.77 
 
 
317 aa  128  9.000000000000001e-29  Burkholderia sp. 383  Bacteria  normal  0.417319  normal  0.651457 
 
 
-
 
NC_010508  Bcenmc03_1568  LysR family transcriptional regulator  32.35 
 
 
317 aa  124  2e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.841213  normal  0.890695 
 
 
-
 
NC_010622  Bphy_1158  LysR family transcriptional regulator  31.91 
 
 
301 aa  122  7e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0963  LysR family transcriptional regulator  29.07 
 
 
334 aa  122  8e-27  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5126  LysR family transcriptional regulator  28.77 
 
 
319 aa  120  1.9999999999999998e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.255501  normal  0.155944 
 
 
-
 
NC_010184  BcerKBAB4_2244  LysR family transcriptional regulator  28.4 
 
 
305 aa  120  1.9999999999999998e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2216  transcriptional regulator, LysR family  30.27 
 
 
311 aa  120  3e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1591  LysR family transcriptional regulator  31.93 
 
 
324 aa  120  3e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0175342  n/a   
 
 
-
 
NC_008060  Bcen_1111  LysR family transcriptional regulator  31.93 
 
 
317 aa  120  3e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2937  transcriptional regulator, LysR family  28.81 
 
 
300 aa  119  4.9999999999999996e-26  Bacillus cereus G9842  Bacteria  normal  0.0387356  hitchhiker  0.00000808392 
 
 
-
 
NC_010086  Bmul_4986  LysR family transcriptional regulator  28.57 
 
 
304 aa  118  9.999999999999999e-26  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.910518 
 
 
-
 
NC_011725  BCB4264_A2396  transcriptional regulator, LysR family  28.81 
 
 
300 aa  118  9.999999999999999e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2268  regulatory protein, LysR:LysR, substrate-binding  29.75 
 
 
302 aa  117  1.9999999999999998e-25  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.170931  normal  0.112201 
 
 
-
 
NC_008752  Aave_3122  LysR family transcriptional regulator  29.8 
 
 
315 aa  117  1.9999999999999998e-25  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2577  transcriptional regulator, LysR family  29.75 
 
 
297 aa  117  3e-25  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.216536  n/a   
 
 
-
 
NC_010623  Bphy_3176  LysR family transcriptional regulator  32.07 
 
 
304 aa  117  3e-25  Burkholderia phymatum STM815  Bacteria  normal  0.594001  normal 
 
 
-
 
NC_011146  Gbem_1036  transcriptional regulator, LysR family  30.34 
 
 
300 aa  116  3.9999999999999997e-25  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_2231  LysR family transcriptional regulator  28.4 
 
 
300 aa  115  1.0000000000000001e-24  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000245311  n/a   
 
 
-
 
NC_010557  BamMC406_5630  LysR family transcriptional regulator  27.49 
 
 
302 aa  115  1.0000000000000001e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0341867 
 
 
-
 
NC_008392  Bamb_5847  LysR family transcriptional regulator  27.49 
 
 
302 aa  114  1.0000000000000001e-24  Burkholderia ambifaria AMMD  Bacteria  normal  0.632072  normal 
 
 
-
 
NC_012918  GM21_3225  transcriptional regulator, LysR family  30.34 
 
 
300 aa  114  2.0000000000000002e-24  Geobacter sp. M21  Bacteria  n/a    normal  0.456811 
 
 
-
 
NC_008543  Bcen2424_4657  LysR family transcriptional regulator  27.15 
 
 
302 aa  114  2.0000000000000002e-24  Burkholderia cenocepacia HI2424  Bacteria  normal  0.501857  normal 
 
 
-
 
NC_008061  Bcen_3711  LysR family transcriptional regulator  27.15 
 
 
302 aa  114  2.0000000000000002e-24  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.282395  n/a   
 
 
-
 
NC_003909  BCE_2469  LysR family transcriptional regulator  28.4 
 
 
300 aa  114  3e-24  Bacillus cereus ATCC 10987  Bacteria  normal  0.36421  n/a   
 
 
-
 
NC_005945  BAS2271  LysR family transcriptional regulator  28.4 
 
 
300 aa  114  3e-24  Bacillus anthracis str. Sterne  Bacteria  normal  0.865675  n/a   
 
 
-
 
NC_007530  GBAA_2439  LysR family transcriptional regulator  28.4 
 
 
300 aa  114  3e-24  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.763594  n/a   
 
 
-
 
NC_010515  Bcenmc03_5647  LysR family transcriptional regulator  26.8 
 
 
302 aa  113  4.0000000000000004e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.287338 
 
 
-
 
NC_010505  Mrad2831_4825  LysR family transcriptional regulator  29.07 
 
 
303 aa  113  5e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.861271  normal  0.185461 
 
 
-
 
NC_011773  BCAH820_2455  transcriptional regulator, LysR family  27.98 
 
 
300 aa  112  5e-24  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_008044  TM1040_0513  LysR family transcriptional regulator  31.94 
 
 
302 aa  112  7.000000000000001e-24  Ruegeria sp. TM1040  Bacteria  normal  0.810346  normal  0.24806 
 
 
-
 
NC_013421  Pecwa_2528  transcriptional regulator, LysR family  30.17 
 
 
310 aa  112  1.0000000000000001e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A2533  transcriptional regulator, LysR family  27.98 
 
 
300 aa  111  1.0000000000000001e-23  Bacillus cereus AH187  Bacteria  hitchhiker  0.00448001  n/a   
 
 
-
 
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