20 homologs were found in PanDaTox collection
for query gene Avi_6165 on replicon NC_011988
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011988  Avi_6165  hypothetical protein  100 
 
 
110 aa  227  5e-59  Agrobacterium vitis S4  Bacteria  normal  0.203804  n/a   
 
 
-
 
NC_010581  Bind_1398  putative phage repressor  44.44 
 
 
225 aa  62.4  0.000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010580  Bind_3844  XRE family transcriptional regulator  49.18 
 
 
217 aa  61.2  0.000000004  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_1854  putative phage repressor  33.94 
 
 
241 aa  57  0.00000008  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0873919 
 
 
-
 
NC_011369  Rleg2_0691  hypothetical protein  39.06 
 
 
215 aa  52  0.000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00140732  normal 
 
 
-
 
NC_012850  Rleg_0751  hypothetical protein  37.5 
 
 
215 aa  50.4  0.000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5792  putative phage repressor  40.91 
 
 
230 aa  49.7  0.00001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.396613  n/a   
 
 
-
 
NC_007958  RPD_2801  transcriptional regulators  36.23 
 
 
119 aa  43.9  0.0008  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.13672  normal  0.117082 
 
 
-
 
NC_011894  Mnod_6554  putative phage repressor  41.51 
 
 
245 aa  43.5  0.0009  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.024132  n/a   
 
 
-
 
NC_009049  Rsph17029_2421  helix-turn-helix domain-containing protein  34.21 
 
 
132 aa  43.1  0.001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.195917  normal  0.223738 
 
 
-
 
NC_007493  RSP_0762  XRE family transcriptional regulator  34.21 
 
 
132 aa  43.1  0.001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1400  hypothetical protein  32.31 
 
 
153 aa  42.4  0.002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0958  helix-turn-helix domain-containing protein  31.34 
 
 
132 aa  42.4  0.002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2791  XRE family transcriptional regulator  29.17 
 
 
139 aa  42.4  0.002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_3608  XRE family transcriptional regulator  27.1 
 
 
130 aa  42  0.003  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_5950  putative phage repressor  39.62 
 
 
227 aa  42  0.003  Methylobacterium sp. 4-46  Bacteria  normal  0.47143  normal  0.0249434 
 
 
-
 
NC_009428  Rsph17025_0413  helix-turn-helix domain-containing protein  33.78 
 
 
132 aa  41.2  0.005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_1255  transcriptional regulator, XRE family  27.52 
 
 
242 aa  40.8  0.007  Chlorobium limicola DSM 245  Bacteria  normal  0.0691404  n/a   
 
 
-
 
NC_011369  Rleg2_2457  peptidase S24 and S26 domain protein  36.51 
 
 
244 aa  40.8  0.007  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.16155  normal 
 
 
-
 
NC_012034  Athe_2436  transcriptional regulator, XRE family  26.74 
 
 
104 aa  40.8  0.007  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
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