64 homologs were found in PanDaTox collection
for query gene Avi_3632 on replicon NC_011989
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011989  Avi_3632  hypothetical protein  100 
 
 
167 aa  351  2.9999999999999997e-96  Agrobacterium vitis S4  Bacteria  normal  0.963892  n/a   
 
 
-
 
NC_011369  Rleg2_3213  hypothetical protein  68.86 
 
 
167 aa  264  5e-70  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3508  hypothetical protein  68.26 
 
 
167 aa  259  1e-68  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.398913 
 
 
-
 
NC_009428  Rsph17025_1889  hypothetical protein  42.77 
 
 
165 aa  153  9e-37  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.632194  normal  0.504186 
 
 
-
 
NC_007493  RSP_2384  hypothetical protein  43.11 
 
 
186 aa  152  2e-36  Rhodobacter sphaeroides 2.4.1  Bacteria  decreased coverage  0.00852398  n/a   
 
 
-
 
NC_009049  Rsph17029_1047  hypothetical protein  43.11 
 
 
186 aa  152  2e-36  Rhodobacter sphaeroides ATCC 17029  Bacteria  hitchhiker  0.00624108  normal  0.760938 
 
 
-
 
NC_008688  Pden_4608  putative general stress protein 26  33.77 
 
 
160 aa  104  6e-22  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0955  putative general stress protein 26  31.61 
 
 
159 aa  94.4  6e-19  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0534  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  32.39 
 
 
170 aa  81.6  0.000000000000005  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.536525 
 
 
-
 
NC_011138  MADE_02295  general stress protein  35.29 
 
 
146 aa  79  0.00000000000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.944357  n/a   
 
 
-
 
NC_008228  Patl_2404  general stress protein  35 
 
 
154 aa  77.8  0.00000000000006  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00366  general stress protein  32.58 
 
 
162 aa  76.3  0.0000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.222659  n/a   
 
 
-
 
NC_013521  Sked_36910  uncharacterized stress protein (general stress protein 26)  34.17 
 
 
161 aa  75.9  0.0000000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.408882 
 
 
-
 
NC_011992  Dtpsy_0017  pyridoxamine 5'-phosphate oxidase-related FMN-binding  25.93 
 
 
168 aa  75.5  0.0000000000004  Acidovorax ebreus TPSY  Bacteria  normal  0.0687493  n/a   
 
 
-
 
NC_008782  Ajs_4161  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  25.93 
 
 
168 aa  75.5  0.0000000000004  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0014  putative general stress protein 26  25.61 
 
 
165 aa  71.6  0.000000000004  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_6194  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  32.28 
 
 
167 aa  70.5  0.00000000001  Haliangium ochraceum DSM 14365  Bacteria  decreased coverage  0.000117715  normal 
 
 
-
 
NC_007794  Saro_2041  general stress protein  31.75 
 
 
163 aa  69.7  0.00000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_0468  general stress protein  23.38 
 
 
165 aa  68.9  0.00000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_4563  pyridoxamine 5'-phosphate oxidase-related FMN-binding  26.71 
 
 
167 aa  67.8  0.00000000007  Methylobacterium extorquens PA1  Bacteria  normal  0.535991  normal  0.356279 
 
 
-
 
NC_013037  Dfer_4832  pyridoxamine 5'-phosphate oxidase-related FMN- binding  27.34 
 
 
166 aa  67.8  0.00000000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3141  general stress protein  32 
 
 
161 aa  67.4  0.00000000008  Caulobacter sp. K31  Bacteria  normal  normal  0.0462992 
 
 
-
 
NC_010725  Mpop_5080  pyridoxamine 5'-phosphate oxidase-related FMN-binding  26.03 
 
 
167 aa  67.4  0.00000000009  Methylobacterium populi BJ001  Bacteria  normal  normal  0.71556 
 
 
-
 
NC_010511  M446_0415  pyridoxamine 5'-phosphate oxidase-related FMN-binding  26.53 
 
 
169 aa  66.6  0.0000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0380541 
 
 
-
 
NC_008025  Dgeo_0891  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  26.35 
 
 
169 aa  66.2  0.0000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.457578 
 
 
-
 
NC_011757  Mchl_5023  pyridoxamine 5'-phosphate oxidase-related FMN-binding  26.03 
 
 
167 aa  66.6  0.0000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.140709  normal  0.115662 
 
 
-
 
NC_010505  Mrad2831_2143  pyridoxamine 5'-phosphate oxidase-related FMN-binding  26.03 
 
 
167 aa  65.9  0.0000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.429446  normal 
 
 
-
 
NC_008541  Arth_0043  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  31.75 
 
 
160 aa  62  0.000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_2167  general stress protein  33.33 
 
 
154 aa  61.6  0.000000005  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.115401  normal  0.509563 
 
 
-
 
NC_013730  Slin_0757  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  27.91 
 
 
167 aa  61.6  0.000000005  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_1306  pyridoxamine 5'-phosphate oxidase-like FMN-binding protein  27.42 
 
 
153 aa  61.2  0.000000007  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2671  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  21.69 
 
 
180 aa  60.8  0.000000007  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.455745  normal 
 
 
-
 
NC_008254  Meso_3651  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  27.91 
 
 
159 aa  60.8  0.000000008  Chelativorans sp. BNC1  Bacteria  normal  0.187958  n/a   
 
 
-
 
NC_014151  Cfla_2950  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  34.62 
 
 
171 aa  60.1  0.00000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_012854  Rleg_6338  pyridoxamine 5'-phosphate oxidase-related FMN-binding  26.71 
 
 
159 aa  60.1  0.00000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0067  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  25.66 
 
 
163 aa  59.7  0.00000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.663335  normal  0.459209 
 
 
-
 
NC_012803  Mlut_21290  uncharacterized stress protein (general stress protein 26)  27.33 
 
 
160 aa  59.3  0.00000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.967363  n/a   
 
 
-
 
NC_011894  Mnod_1723  pyridoxamine 5'-phosphate oxidase-related FMN-binding  23.97 
 
 
169 aa  59.7  0.00000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0380368  n/a   
 
 
-
 
NC_011886  Achl_0041  pyridoxamine 5'-phosphate oxidase-related FMN-binding  29.41 
 
 
160 aa  59.7  0.00000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013169  Ksed_03010  uncharacterized stress protein (general stress protein 26)  32.52 
 
 
146 aa  58.9  0.00000003  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_1506  pyridoxamine 5'-phosphate oxidase-related FMN- binding  23.03 
 
 
167 aa  58.9  0.00000003  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00738794  normal 
 
 
-
 
NC_007204  Psyc_0186  hypothetical protein  26.5 
 
 
164 aa  58.5  0.00000004  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000256938  normal  0.169414 
 
 
-
 
NC_013757  Gobs_4934  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  29.75 
 
 
159 aa  58.5  0.00000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2296  general stress protein  24.24 
 
 
186 aa  58.5  0.00000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0248237 
 
 
-
 
NC_011071  Smal_1439  pyridoxamine 5'-phosphate oxidase-related FMN-binding  26.81 
 
 
165 aa  58.5  0.00000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.123209  normal 
 
 
-
 
NC_007614  Nmul_A2175  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  25 
 
 
169 aa  58.2  0.00000005  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0235  hypothetical protein  24.03 
 
 
161 aa  58.2  0.00000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0424787  normal  0.647212 
 
 
-
 
NC_011368  Rleg2_4578  pyridoxamine 5'-phosphate oxidase-related FMN-binding  27.56 
 
 
159 aa  57.8  0.00000007  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.208727  normal 
 
 
-
 
NC_010717  PXO_00185  general stress protein  26.36 
 
 
166 aa  57  0.0000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.78634  n/a   
 
 
-
 
NC_007413  Ava_4901  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  25.9 
 
 
152 aa  57.4  0.0000001  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00000931865  normal  0.0570738 
 
 
-
 
NC_007969  Pcryo_0207  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  25.64 
 
 
164 aa  55.1  0.0000005  Psychrobacter cryohalolentis K5  Bacteria  hitchhiker  0.0000595835  normal 
 
 
-
 
NC_009972  Haur_1688  pyridoxamine 5'-phosphate oxidase-related FMN-binding  22.37 
 
 
165 aa  54.3  0.0000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.317072  n/a   
 
 
-
 
NC_009524  PsycPRwf_0544  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  26.27 
 
 
164 aa  53.9  0.0000009  Psychrobacter sp. PRwf-1  Bacteria  decreased coverage  0.000110488  unclonable  0.00000000107777 
 
 
-
 
NC_007958  RPD_0477  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  23.72 
 
 
162 aa  52.4  0.000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.130245  normal  0.542758 
 
 
-
 
NC_011004  Rpal_0214  pyridoxamine 5'-phosphate oxidase-related FMN-binding  22.64 
 
 
162 aa  51.2  0.000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.384494  n/a   
 
 
-
 
NC_013061  Phep_2509  hypothetical protein  23.97 
 
 
178 aa  50.8  0.000009  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0323  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  23.72 
 
 
162 aa  50.4  0.00001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.17098  normal 
 
 
-
 
NC_007959  Nham_4106  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  20.26 
 
 
163 aa  50.4  0.00001  Nitrobacter hamburgensis X14  Bacteria  normal  0.318371  n/a   
 
 
-
 
NC_013235  Namu_3457  pyridoxamine 5'-phosphate oxidase-related FMN- binding  24.53 
 
 
166 aa  50.1  0.00002  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00322283  hitchhiker  0.00394331 
 
 
-
 
NC_009621  Smed_5578  pyridoxamine 5'-phosphate oxidase-related FMN-binding  27.07 
 
 
145 aa  47.4  0.0001  Sinorhizobium medicae WSM419  Bacteria  normal  0.374657  normal  0.0885216 
 
 
-
 
NC_013132  Cpin_6715  pyridoxamine 5'-phosphate oxidase-related FMN- binding  22.67 
 
 
178 aa  46.2  0.0002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3048  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  23.58 
 
 
159 aa  46.2  0.0002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2178  uncharacterized stress protein  26.23 
 
 
194 aa  42.7  0.002  Methylibium petroleiphilum PM1  Bacteria  normal  0.747799  normal  0.211573 
 
 
-
 
NC_013172  Bfae_04320  uncharacterized stress protein (general stress protein 26)  24.51 
 
 
162 aa  42.7  0.002  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
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