More than 300 homologs were found in PanDaTox collection
for query gene Ajs_1059 on replicon NC_008782
Organism: Acidovorax sp. JS42



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008782  Ajs_1059  two component transcriptional regulator  100 
 
 
242 aa  479  1e-134  Acidovorax sp. JS42  Bacteria  normal  0.346912  normal 
 
 
-
 
NC_011992  Dtpsy_0977  two component transcriptional regulator, winged helix family  99.59 
 
 
242 aa  476  1e-133  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1493  two component transcriptional regulator  68.53 
 
 
232 aa  304  8.000000000000001e-82  Acidovorax citrulli AAC00-1  Bacteria  normal  0.12584  normal  0.340507 
 
 
-
 
NC_012791  Vapar_4259  two component transcriptional regulator, winged helix family  61.47 
 
 
230 aa  274  1.0000000000000001e-72  Variovorax paradoxus S110  Bacteria  normal  0.602522  n/a   
 
 
-
 
NC_010002  Daci_3145  two component transcriptional regulator  59.57 
 
 
231 aa  257  1e-67  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00258001  hitchhiker  0.000377263 
 
 
-
 
NC_011353  ECH74115_3019  DNA-binding transcriptional regulator BaeR  52.77 
 
 
240 aa  229  3e-59  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0767733 
 
 
-
 
CP001509  ECD_01984  DNA-binding response regulator in two-component regulatory system with BaeS  52.77 
 
 
240 aa  228  5e-59  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1577  two component transcriptional regulator, winged helix family  52.77 
 
 
240 aa  228  5e-59  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_01976  hypothetical protein  52.77 
 
 
240 aa  228  5e-59  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0981  DNA-binding transcriptional regulator BaeR  52.77 
 
 
240 aa  228  5e-59  Escherichia coli SMS-3-5  Bacteria  normal  0.443633  normal  0.661259 
 
 
-
 
NC_009800  EcHS_A2221  DNA-binding transcriptional regulator BaeR  52.77 
 
 
240 aa  228  5e-59  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1562  DNA-binding transcriptional regulator BaeR  52.77 
 
 
240 aa  227  1e-58  Escherichia coli ATCC 8739  Bacteria  normal  0.279171  normal  0.454228 
 
 
-
 
NC_010658  SbBS512_E1154  DNA-binding transcriptional regulator BaeR  52.34 
 
 
240 aa  226  3e-58  Shigella boydii CDC 3083-94  Bacteria  normal  0.233901  n/a   
 
 
-
 
NC_009801  EcE24377A_2371  DNA-binding transcriptional regulator BaeR  52.34 
 
 
240 aa  226  3e-58  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A2477  DNA-binding transcriptional regulator BaeR  52.77 
 
 
240 aa  226  4e-58  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2368  DNA-binding transcriptional regulator BaeR  52.77 
 
 
240 aa  226  4e-58  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.531777  normal  0.413146 
 
 
-
 
NC_011083  SeHA_C2361  DNA-binding transcriptional regulator BaeR  52.77 
 
 
240 aa  226  4e-58  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2261  DNA-binding transcriptional regulator BaeR  52.77 
 
 
240 aa  226  4e-58  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.806239  n/a   
 
 
-
 
NC_011080  SNSL254_A2317  DNA-binding transcriptional regulator BaeR  52.77 
 
 
240 aa  225  5.0000000000000005e-58  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.539006  normal 
 
 
-
 
NC_009436  Ent638_2689  DNA-binding transcriptional regulator BaeR  51.49 
 
 
240 aa  221  8e-57  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_0360  two component signal transduction response regulator  51.54 
 
 
224 aa  219  3e-56  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4255  two component transcriptional regulator, winged helix family  53.28 
 
 
226 aa  214  8e-55  Variovorax paradoxus S110  Bacteria  normal  0.969066  n/a   
 
 
-
 
NC_009832  Spro_3557  DNA-binding transcriptional regulator BaeR  49.78 
 
 
239 aa  213  1.9999999999999998e-54  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_3292  two component transcriptional regulator  49.12 
 
 
225 aa  213  1.9999999999999998e-54  Geobacter uraniireducens Rf4  Bacteria  normal  0.580789  n/a   
 
 
-
 
NC_010623  Bphy_3929  two component transcriptional regulator  48.13 
 
 
247 aa  205  4e-52  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3118  DNA-binding response regulator  52.65 
 
 
227 aa  204  7e-52  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS05646  two-component response regulator transcription regulator protein  50.88 
 
 
219 aa  204  1e-51  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0031  two component transcriptional regulator, winged helix family  51.53 
 
 
234 aa  203  2e-51  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_14310  Response regulator  50.88 
 
 
226 aa  202  3e-51  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_4321  two component transcriptional regulator, winged helix family  50 
 
 
219 aa  201  9.999999999999999e-51  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0131168 
 
 
-
 
NC_010678  Rpic_4211  two component transcriptional regulator, winged helix family  50 
 
 
219 aa  201  9.999999999999999e-51  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2868  response regulator receiver:transcriptional regulatory protein, C-terminal  50 
 
 
227 aa  200  1.9999999999999998e-50  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0808147  normal  0.133304 
 
 
-
 
NC_013421  Pecwa_1307  DNA-binding transcriptional regulator BaeR  46.03 
 
 
242 aa  199  3e-50  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0968  two component transcriptional regulator  51.75 
 
 
227 aa  198  7e-50  Chromohalobacter salexigens DSM 3043  Bacteria  unclonable  0.00000000899876  n/a   
 
 
-
 
NC_010159  YpAngola_A3098  DNA-binding transcriptional regulator BaeR  46.52 
 
 
239 aa  197  1.0000000000000001e-49  Yersinia pestis Angola  Bacteria  hitchhiker  0.0001052  normal 
 
 
-
 
NC_010465  YPK_1327  DNA-binding transcriptional regulator BaeR  46.52 
 
 
239 aa  197  1.0000000000000001e-49  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1210  DNA-binding transcriptional regulator BaeR  46.52 
 
 
239 aa  197  1.0000000000000001e-49  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.000000000498147  n/a   
 
 
-
 
NC_010524  Lcho_2476  two component transcriptional regulator  51.95 
 
 
241 aa  197  1.0000000000000001e-49  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000027247 
 
 
-
 
NC_008609  Ppro_2228  two component transcriptional regulator  48.23 
 
 
222 aa  196  3e-49  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00319429  n/a   
 
 
-
 
NC_012917  PC1_2972  DNA-binding transcriptional regulator BaeR  46.03 
 
 
242 aa  196  4.0000000000000005e-49  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1066  two component transcriptional regulator, winged helix family  50.67 
 
 
222 aa  195  6e-49  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_3305  DNA-binding response regulator BaeR  45.45 
 
 
232 aa  194  1e-48  Colwellia psychrerythraea 34H  Bacteria  normal  0.304306  n/a   
 
 
-
 
NC_008228  Patl_1527  two component transcriptional regulator  43.29 
 
 
230 aa  194  1e-48  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.255733  n/a   
 
 
-
 
NC_010424  Daud_1897  two component transcriptional regulator  47.79 
 
 
227 aa  194  1e-48  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.151466  n/a   
 
 
-
 
NC_007912  Sde_2724  response regulator receiver domain-containing protein  45.37 
 
 
230 aa  192  3e-48  Saccharophagus degradans 2-40  Bacteria  normal  0.480114  normal 
 
 
-
 
NC_009831  Ssed_2590  two component transcriptional regulator  45.37 
 
 
230 aa  192  5e-48  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_0234  response regulator receiver  46.88 
 
 
221 aa  192  5e-48  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0988  response regulator BaeR  43.56 
 
 
227 aa  191  7e-48  Psychromonas ingrahamii 37  Bacteria  hitchhiker  0.000405458  normal  0.303622 
 
 
-
 
NC_012880  Dd703_2707  DNA-binding transcriptional regulator BaeR  45.69 
 
 
243 aa  191  1e-47  Dickeya dadantii Ech703  Bacteria  normal  0.33731  n/a   
 
 
-
 
NC_012912  Dd1591_1201  DNA-binding transcriptional regulator BaeR  46.55 
 
 
243 aa  189  2.9999999999999997e-47  Dickeya zeae Ech1591  Bacteria  normal  0.106709  n/a   
 
 
-
 
NC_008346  Swol_1681  response regulator receiver protein  45.33 
 
 
227 aa  188  7e-47  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0956507  n/a   
 
 
-
 
NC_007777  Francci3_0978  two component transcriptional regulator  45.41 
 
 
321 aa  187  1e-46  Frankia sp. CcI3  Bacteria  normal  0.323902  normal 
 
 
-
 
NC_011830  Dhaf_1756  two component transcriptional regulator, winged helix family  42.92 
 
 
230 aa  186  2e-46  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.769657  n/a   
 
 
-
 
NC_009654  Mmwyl1_2872  two component transcriptional regulator  42.98 
 
 
226 aa  186  2e-46  Marinomonas sp. MWYL1  Bacteria  normal  0.702853  hitchhiker  0.00802276 
 
 
-
 
NC_007520  Tcr_0969  two component transcriptional regulator  43.48 
 
 
226 aa  186  3e-46  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.165699  n/a   
 
 
-
 
NC_009380  Strop_1197  response regulator receiver  46.72 
 
 
230 aa  186  3e-46  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3962  two component transcriptional regulator  43.1 
 
 
221 aa  182  5.0000000000000004e-45  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0753  putative response regulator  43.93 
 
 
240 aa  181  1e-44  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03764  two-component system regulatory protein  47.86 
 
 
247 aa  181  1e-44  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1104  response regulator receiver protein  42.29 
 
 
222 aa  181  1e-44  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1573  two component transcriptional regulator, winged helix family protein  42.79 
 
 
234 aa  180  2e-44  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1522  two component transcriptional regulator  47.62 
 
 
227 aa  179  4e-44  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0243  two component transcriptional regulator, winged helix family  46.52 
 
 
235 aa  179  4.999999999999999e-44  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0646165  normal 
 
 
-
 
NC_009439  Pmen_4120  DNA-binding response regulator CreB  45.65 
 
 
226 aa  178  8e-44  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_3302  two component transcriptional regulator  42.67 
 
 
230 aa  178  9e-44  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.288231  normal  0.346827 
 
 
-
 
NC_011071  Smal_3840  two component transcriptional regulator, winged helix family  51.09 
 
 
229 aa  177  1e-43  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0596  response regulator receiver domain protein  42.44 
 
 
250 aa  177  1e-43  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_1276  two component transcriptional regulator, winged helix family  47.48 
 
 
242 aa  177  1e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.114994 
 
 
-
 
NC_009953  Sare_1090  two component transcriptional regulator  45.69 
 
 
230 aa  177  1e-43  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0839689 
 
 
-
 
NC_011898  Ccel_1892  two component transcriptional regulator, winged helix family  39.08 
 
 
228 aa  177  2e-43  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000392  n/a   
 
 
-
 
NC_013530  Xcel_2485  two component transcriptional regulator, winged helix family  48.73 
 
 
243 aa  177  2e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1028  two component transcriptional regulator, winged helix family  45.45 
 
 
237 aa  177  2e-43  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3335  two component transcriptional regulator  44.89 
 
 
230 aa  176  2e-43  Ruegeria sp. TM1040  Bacteria  normal  normal  0.428008 
 
 
-
 
NC_009767  Rcas_1504  two component transcriptional regulator  47.16 
 
 
231 aa  176  3e-43  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.263867  normal  0.57819 
 
 
-
 
NC_011146  Gbem_3296  two component transcriptional regulator, winged helix family  46.49 
 
 
223 aa  176  4e-43  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0951  two component transcriptional regulator, winged helix family  46.49 
 
 
223 aa  175  5e-43  Geobacter sp. M21  Bacteria  n/a    normal  0.207417 
 
 
-
 
NC_009664  Krad_1230  two component transcriptional regulator, winged helix family  45 
 
 
254 aa  175  6e-43  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.211629  normal  0.177188 
 
 
-
 
NC_009767  Rcas_0353  two component transcriptional regulator  46.29 
 
 
230 aa  174  8e-43  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.683455 
 
 
-
 
NC_010320  Teth514_0766  two component transcriptional regulator  39.38 
 
 
231 aa  174  9e-43  Thermoanaerobacter sp. X514  Bacteria  normal  0.585906  n/a   
 
 
-
 
NC_013235  Namu_2566  two component transcriptional regulator, winged helix family  48.46 
 
 
229 aa  174  9.999999999999999e-43  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000356007  hitchhiker  0.00345607 
 
 
-
 
NC_012791  Vapar_2988  two component transcriptional regulator, winged helix family  44.49 
 
 
242 aa  174  9.999999999999999e-43  Variovorax paradoxus S110  Bacteria  normal  0.410423  n/a   
 
 
-
 
NC_014212  Mesil_0738  two component transcriptional regulator, winged helix family  48.07 
 
 
223 aa  174  9.999999999999999e-43  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00000283527  decreased coverage  0.00121253 
 
 
-
 
NC_013521  Sked_09580  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  46.41 
 
 
244 aa  174  9.999999999999999e-43  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.132168 
 
 
-
 
NC_009523  RoseRS_3737  two component transcriptional regulator  46.81 
 
 
231 aa  174  9.999999999999999e-43  Roseiflexus sp. RS-1  Bacteria  normal  hitchhiker  0.00273603 
 
 
-
 
NC_002939  GSU2145  DNA-binding response regulator  44 
 
 
232 aa  173  1.9999999999999998e-42  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0588  two component transcriptional regulator  39.06 
 
 
227 aa  173  1.9999999999999998e-42  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000451147  n/a   
 
 
-
 
NC_009972  Haur_3061  two component transcriptional regulator  45.3 
 
 
227 aa  173  1.9999999999999998e-42  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.799336  n/a   
 
 
-
 
NC_011830  Dhaf_3739  two component transcriptional regulator, winged helix family  40.52 
 
 
230 aa  173  1.9999999999999998e-42  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000466515  n/a   
 
 
-
 
NC_011830  Dhaf_1367  two component transcriptional regulator, winged helix family  43.29 
 
 
230 aa  173  1.9999999999999998e-42  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000177207  n/a   
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  39.38 
 
 
231 aa  172  2.9999999999999996e-42  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000430064  n/a   
 
 
-
 
NC_009674  Bcer98_0264  two component transcriptional regulator  37.55 
 
 
238 aa  172  3.9999999999999995e-42  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.392693  n/a   
 
 
-
 
NC_009012  Cthe_1847  two component transcriptional regulator  40.79 
 
 
234 aa  172  3.9999999999999995e-42  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00000121968  n/a   
 
 
-
 
NC_013440  Hoch_0268  two component transcriptional regulator, winged helix family  44.26 
 
 
227 aa  172  3.9999999999999995e-42  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.509377 
 
 
-
 
NC_011899  Hore_21640  two component transcriptional regulator, winged helix family  43.67 
 
 
226 aa  172  5e-42  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000176926  n/a   
 
 
-
 
NC_011898  Ccel_1714  two component transcriptional regulator, winged helix family  38.89 
 
 
234 aa  172  5e-42  Clostridium cellulolyticum H10  Bacteria  normal  0.233786  n/a   
 
 
-
 
NC_009972  Haur_2358  two component transcriptional regulator  42.06 
 
 
231 aa  171  7.999999999999999e-42  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0136772  n/a   
 
 
-
 
NC_009656  PSPA7_0568  DNA-binding response regulator CreB  45.37 
 
 
229 aa  171  7.999999999999999e-42  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0391692  n/a   
 
 
-
 
NC_013174  Jden_1802  two component transcriptional regulator, winged helix family  46.12 
 
 
232 aa  171  7.999999999999999e-42  Jonesia denitrificans DSM 20603  Bacteria  normal  0.150286  normal 
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  41.67 
 
 
230 aa  171  7.999999999999999e-42  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_011830  Dhaf_1673  two component transcriptional regulator, winged helix family  41.45 
 
 
233 aa  171  1e-41  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
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