101 homologs were found in PanDaTox collection
for query gene Afer_2012 on replicon NC_013124
Organism: Acidimicrobium ferrooxidans DSM 10331



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013124  Afer_2012  deoxyribodipyrimidine photolyase-related protein  100 
 
 
502 aa  1010    Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5626  deoxyribodipyrimidine photolyase-related protein  44.12 
 
 
534 aa  370  1e-101  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.147008  normal  0.0556848 
 
 
-
 
NC_011831  Cagg_3318  deoxyribodipyrimidine photolyase-related protein  43.36 
 
 
497 aa  370  1e-101  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.420687  hitchhiker  0.00000494763 
 
 
-
 
NC_007604  Synpcc7942_1171  hypothetical protein  40.4 
 
 
503 aa  368  1e-100  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4251  deoxyribodipyrimidine photolyase-related protein  41.88 
 
 
508 aa  367  1e-100  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_1000  deoxyribodipyrimidine photolyase-related protein  41.41 
 
 
511 aa  365  1e-99  Maricaulis maris MCS10  Bacteria  normal  0.760695  normal 
 
 
-
 
NC_009485  BBta_2956  hypothetical protein  43.11 
 
 
508 aa  364  2e-99  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.888276  normal  0.195961 
 
 
-
 
NC_008044  TM1040_2281  deoxyribodipyrimidine photolyase-related protein  40.86 
 
 
507 aa  363  4e-99  Ruegeria sp. TM1040  Bacteria  normal  normal  0.558867 
 
 
-
 
NC_009523  RoseRS_0009  deoxyribodipyrimidine photolyase-related protein  41.99 
 
 
508 aa  363  4e-99  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0417103 
 
 
-
 
NC_011884  Cyan7425_3982  deoxyribodipyrimidine photolyase-related protein  39.48 
 
 
507 aa  356  5e-97  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00134489 
 
 
-
 
NC_010511  M446_5454  deoxyribodipyrimidine photolyase-related protein  44.9 
 
 
533 aa  353  5e-96  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.120235 
 
 
-
 
NC_011729  PCC7424_4487  deoxyribodipyrimidine photolyase-related protein  38.35 
 
 
506 aa  352  7e-96  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009338  Mflv_3490  deoxyribodipyrimidine photolyase-related protein  40.2 
 
 
505 aa  352  8.999999999999999e-96  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.189609 
 
 
-
 
NC_007802  Jann_3641  deoxyribodipyrimidine photolyase-related protein  39.8 
 
 
508 aa  351  2e-95  Jannaschia sp. CCS1  Bacteria  normal  normal  0.175337 
 
 
-
 
NC_008752  Aave_4518  deoxyribodipyrimidine photolyase-related protein  42.8 
 
 
533 aa  350  2e-95  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0896  deoxyribodipyrimidine photolyase-related protein  40.75 
 
 
524 aa  350  4e-95  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_3270  deoxyribodipyrimidine photolyase-related protein  40.44 
 
 
494 aa  349  7e-95  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.737297  normal 
 
 
-
 
NC_009050  Rsph17029_3804  deoxyribodipyrimidine photolyase-related protein  41.99 
 
 
508 aa  348  1e-94  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.206805 
 
 
-
 
NC_007494  RSP_3077  hypothetical protein  41.54 
 
 
508 aa  347  3e-94  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0599  deoxyribodipyrimidine photolyase-related protein  40.5 
 
 
508 aa  347  4e-94  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.315159  normal 
 
 
-
 
NC_011138  MADE_02017  deoxyribodipyrimidine photolyase-related protein  35.58 
 
 
512 aa  346  5e-94  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.571234  n/a   
 
 
-
 
NC_013757  Gobs_0647  deoxyribodipyrimidine photolyase-related protein  43.25 
 
 
528 aa  345  1e-93  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3101  deoxyribodipyrimidine photolyase-related protein  39.22 
 
 
510 aa  344  2e-93  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1396  DNA photolyase  41.22 
 
 
524 aa  341  2e-92  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.64137  n/a   
 
 
-
 
NC_013422  Hneap_1235  deoxyribodipyrimidine photolyase-related protein  39.88 
 
 
511 aa  341  2e-92  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.00923753  n/a   
 
 
-
 
NC_009664  Krad_3082  deoxyribodipyrimidine photolyase-related protein  43.29 
 
 
510 aa  339  8e-92  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.47785  normal  0.0294382 
 
 
-
 
NC_007005  Psyr_1785  deoxyribodipyrimidine photolyase-like protein protein  38.87 
 
 
519 aa  338  9.999999999999999e-92  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00721619 
 
 
-
 
NC_004578  PSPTO_3689  hypothetical protein  38.34 
 
 
512 aa  337  1.9999999999999998e-91  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.116484  n/a   
 
 
-
 
NC_002947  PP_2732  hypothetical protein  39.57 
 
 
508 aa  335  1e-90  Pseudomonas putida KT2440  Bacteria  normal  0.380402  normal 
 
 
-
 
NC_007492  Pfl01_2809  deoxyribodipyrimidine photolyase-like protein  38.49 
 
 
512 aa  334  2e-90  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3022  deoxyribodipyrimidine photolyase-related protein  40.2 
 
 
508 aa  335  2e-90  Pseudomonas putida F1  Bacteria  normal  0.619117  normal 
 
 
-
 
NC_013202  Hmuk_2689  deoxyribodipyrimidine photolyase-related protein  39.88 
 
 
508 aa  334  2e-90  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.14747 
 
 
-
 
NC_013889  TK90_0821  deoxyribodipyrimidine photolyase-related protein  42.24 
 
 
525 aa  333  5e-90  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.627102  normal  0.414989 
 
 
-
 
NC_009439  Pmen_1204  deoxyribodipyrimidine photolyase-related protein  38.76 
 
 
520 aa  330  4e-89  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000923921  normal 
 
 
-
 
NC_009484  Acry_1728  deoxyribodipyrimidine photolyase-related protein  38.75 
 
 
513 aa  328  1.0000000000000001e-88  Acidiphilium cryptum JF-5  Bacteria  normal  0.483675  n/a   
 
 
-
 
NC_013235  Namu_2791  deoxyribodipyrimidine photolyase-related protein  43.14 
 
 
500 aa  328  1.0000000000000001e-88  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000121396  hitchhiker  0.0000216403 
 
 
-
 
NC_009077  Mjls_2939  deoxyribodipyrimidine photolyase-related protein  39 
 
 
496 aa  327  3e-88  Mycobacterium sp. JLS  Bacteria  normal  normal  0.119687 
 
 
-
 
NC_008146  Mmcs_2924  deoxyribodipyrimidine photolyase-related protein  39 
 
 
525 aa  327  4.0000000000000003e-88  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2968  deoxyribodipyrimidine photolyase-related protein  39 
 
 
525 aa  327  4.0000000000000003e-88  Mycobacterium sp. KMS  Bacteria  normal  0.278599  normal 
 
 
-
 
NC_007794  Saro_2394  deoxyribodipyrimidine photolyase-related protein  39.88 
 
 
522 aa  326  5e-88  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_3755  deoxyribodipyrimidine photolyase-related protein  38.16 
 
 
532 aa  325  1e-87  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1250  deoxyribodipyrimidine photolyase-related protein  42.01 
 
 
513 aa  318  1e-85  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000733779 
 
 
-
 
NC_009429  Rsph17025_3928  BCCT transporter  41.25 
 
 
508 aa  317  3e-85  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.240048  normal  0.840759 
 
 
-
 
NC_010087  Bmul_5845  deoxyribodipyrimidine photolyase-related protein  40.08 
 
 
509 aa  317  3e-85  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2999  deoxyribodipyrimidine photolyase-related protein  36.76 
 
 
513 aa  315  8e-85  Pseudomonas putida W619  Bacteria  normal  normal  0.248063 
 
 
-
 
NC_014230  CA2559_07801  deoxyribodipyrimidine photolyase related protein  33.2 
 
 
511 aa  315  9e-85  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.179708  n/a   
 
 
-
 
NC_006369  lpl0260  hypothetical protein  34.04 
 
 
512 aa  315  1.9999999999999998e-84  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010717  PXO_01727  deoxyribodipyrimidine photolyase-related protein  40.2 
 
 
525 aa  314  2.9999999999999996e-84  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000795  DNA photolyase  35.61 
 
 
514 aa  312  9e-84  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06692  hypothetical protein  35.25 
 
 
514 aa  312  1e-83  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013946  Mrub_2169  deoxyribodipyrimidine photolyase-related protein  40.28 
 
 
498 aa  310  4e-83  Meiothermus ruber DSM 1279  Bacteria  normal  0.752806  normal 
 
 
-
 
NC_008322  Shewmr7_0429  deoxyribodipyrimidine photolyase-related protein  36.78 
 
 
525 aa  309  8e-83  Shewanella sp. MR-7  Bacteria  normal  0.50429  normal 
 
 
-
 
NC_008577  Shewana3_3704  deoxyribodipyrimidine photolyase-related protein  36.57 
 
 
525 aa  309  9e-83  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_1551  deoxyribodipyrimidine photolyase-related protein  36.06 
 
 
516 aa  308  1.0000000000000001e-82  Psychromonas ingrahamii 37  Bacteria  normal  0.585368  normal  0.610204 
 
 
-
 
NC_009665  Shew185_0441  deoxyribodipyrimidine photolyase-related protein  36.42 
 
 
525 aa  306  7e-82  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3526  deoxyribodipyrimidine photolyase-related protein  36.4 
 
 
525 aa  305  8.000000000000001e-82  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1608  deoxyribodipyrimidine photolyase-related protein  37.94 
 
 
511 aa  306  8.000000000000001e-82  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0777  deoxyribodipyrimidine photolyase-related protein  35.17 
 
 
528 aa  305  1.0000000000000001e-81  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013158  Huta_0265  deoxyribodipyrimidine photolyase-related protein  39.55 
 
 
510 aa  305  1.0000000000000001e-81  Halorhabdus utahensis DSM 12940  Archaea  normal  0.319874  n/a   
 
 
-
 
NC_004347  SO_4169  hypothetical protein  37.32 
 
 
521 aa  304  2.0000000000000002e-81  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_0524  deoxyribodipyrimidine photolyase-related protein  35 
 
 
521 aa  305  2.0000000000000002e-81  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2055  putative alpha-deoxyribodipyrimidine photolyase-related protein  43 
 
 
510 aa  301  2e-80  Methylibium petroleiphilum PM1  Bacteria  normal  0.527245  normal 
 
 
-
 
NC_008255  CHU_1054  hypothetical protein  33.93 
 
 
521 aa  295  1e-78  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.624164 
 
 
-
 
NC_009456  VC0395_0425  hypothetical protein  42.39 
 
 
516 aa  295  2e-78  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000280647  n/a   
 
 
-
 
NC_009654  Mmwyl1_0335  deoxyribodipyrimidine photolyase-related protein  34.37 
 
 
522 aa  294  2e-78  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3872  deoxyribodipyrimidine photolyase-related protein  36.79 
 
 
521 aa  294  3e-78  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0458  deoxyribodipyrimidine photolyase-related protein  36.2 
 
 
521 aa  293  6e-78  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0467  deoxyribodipyrimidine photolyase-related protein  36.59 
 
 
521 aa  292  1e-77  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_0531  deoxyribodipyrimidine photolyase-related protein  41.25 
 
 
511 aa  291  2e-77  Thauera sp. MZ1T  Bacteria  normal  0.548466  n/a   
 
 
-
 
NC_008700  Sama_2497  hypothetical protein  35.21 
 
 
569 aa  285  2.0000000000000002e-75  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2030  deoxyribodipyrimidine photolyase-related protein  39.61 
 
 
519 aa  282  9e-75  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0662893  normal  0.30492 
 
 
-
 
NC_011312  VSAL_I1806  hypothetical protein  33.6 
 
 
523 aa  275  1.0000000000000001e-72  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.501424  n/a   
 
 
-
 
NC_010506  Swoo_3929  deoxyribodipyrimidine photolyase-related protein  32.17 
 
 
531 aa  257  4e-67  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007516  Syncc9605_1361  photolyase family protein  35.67 
 
 
498 aa  248  2e-64  Synechococcus sp. CC9605  Bacteria  normal  0.174089  normal  0.307121 
 
 
-
 
NC_008312  Tery_3925  deoxyribodipyrimidine photolyase-related protein  31.22 
 
 
476 aa  242  1e-62  Trichodesmium erythraeum IMS101  Bacteria  normal  hitchhiker  0.0027073 
 
 
-
 
NC_013521  Sked_26230  deoxyribodipyrimidine photolyase-related protein  36.98 
 
 
532 aa  242  1e-62  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.355559  normal  0.113738 
 
 
-
 
NC_013132  Cpin_7174  deoxyribodipyrimidine photolyase-related protein  30.86 
 
 
492 aa  239  8e-62  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007513  Syncc9902_1117  photolyase family protein  34.11 
 
 
505 aa  238  1e-61  Synechococcus sp. CC9902  Bacteria  normal  0.322412  n/a   
 
 
-
 
NC_008819  NATL1_15641  hypothetical protein  29.87 
 
 
496 aa  236  8e-61  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.681049 
 
 
-
 
NC_007335  PMN2A_0726  hypothetical protein  30.07 
 
 
496 aa  234  2.0000000000000002e-60  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1823  deoxyribodipyrimidine photolyase-related protein  33.4 
 
 
502 aa  231  3e-59  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0760009  normal 
 
 
-
 
NC_008817  P9515_04871  hypothetical protein  29.84 
 
 
496 aa  228  1e-58  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_007577  PMT9312_0423  hypothetical protein  29.02 
 
 
496 aa  226  1e-57  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.27403  n/a   
 
 
-
 
NC_009091  P9301_04471  hypothetical protein  29.4 
 
 
496 aa  225  2e-57  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.77539  n/a   
 
 
-
 
NC_011886  Achl_2542  deoxyribodipyrimidine photolyase-related protein  34.62 
 
 
537 aa  225  2e-57  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000228868 
 
 
-
 
NC_008816  A9601_04781  hypothetical protein  29.02 
 
 
496 aa  224  3e-57  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.289419  n/a   
 
 
-
 
NC_008228  Patl_2797  deoxyribodipyrimidine photolyase-related protein  31.25 
 
 
503 aa  212  1e-53  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1265  deoxyribodipyrimidine photolyase-like protein  49.5 
 
 
186 aa  118  3e-25  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.224709 
 
 
-
 
NC_013501  Rmar_1604  Deoxyribodipyrimidine photo-lyase  27.24 
 
 
486 aa  57.4  0.0000005  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0811  deoxyribodipyrimidine photo-lyase  26.75 
 
 
475 aa  52.4  0.00002  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0820  Deoxyribodipyrimidine photo-lyase  24.7 
 
 
469 aa  52.8  0.00002  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.627339 
 
 
-
 
NC_010717  PXO_04795  photolyase  26.43 
 
 
472 aa  51.2  0.00004  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.722935  n/a   
 
 
-
 
NC_011901  Tgr7_1394  Deoxyribodipyrimidine photo-lyase  25.97 
 
 
483 aa  50.8  0.00006  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1589  DNA photolyase FAD-binding  25.21 
 
 
271 aa  49.3  0.0002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4249  deoxyribodipyrimidine photolyase-like protein  24.45 
 
 
270 aa  48.1  0.0004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007516  Syncc9605_0218  deoxyribodipyrimidine photo-lyase family protein  25 
 
 
303 aa  47  0.0007  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1989  deoxyribodipyrimidine photo-lyase type I  25.73 
 
 
468 aa  45.8  0.002  Jannaschia sp. CCS1  Bacteria  normal  0.382914  normal  0.885594 
 
 
-
 
NC_008709  Ping_0998  deoxyribodipyrimidine photo-lyase  23.03 
 
 
453 aa  45.8  0.002  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0011  deoxyribodipyrimidine photolyase-like protein  24.24 
 
 
270 aa  44.7  0.004  Roseiflexus sp. RS-1  Bacteria  normal  0.161683  normal  0.149093 
 
 
-
 
NC_007954  Sden_2838  deoxyribodipyrimidine photolyase  23.83 
 
 
497 aa  43.9  0.007  Shewanella denitrificans OS217  Bacteria  normal  0.182548  n/a   
 
 
-
 
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