More than 300 homologs were found in PanDaTox collection
for query gene Afer_1145 on replicon NC_013124
Organism: Acidimicrobium ferrooxidans DSM 10331



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013124  Afer_1145  cell envelope-related transcriptional attenuator  100 
 
 
543 aa  1098    Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0412  cell envelope-related transcriptional attenuator  34.48 
 
 
491 aa  136  9e-31  Acidothermus cellulolyticus 11B  Bacteria  normal  0.245301  normal 
 
 
-
 
NC_013510  Tcur_4114  cell envelope-related transcriptional attenuator  26.98 
 
 
549 aa  129  1.0000000000000001e-28  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4745  cell envelope-related transcriptional attenuator  30.89 
 
 
584 aa  127  6e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  31.93 
 
 
512 aa  126  1e-27  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  33.33 
 
 
453 aa  125  1e-27  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  31.93 
 
 
486 aa  126  1e-27  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  28.2 
 
 
505 aa  126  1e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  25.92 
 
 
497 aa  124  5e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0784  cell envelope-related transcriptional attenuator  28.24 
 
 
400 aa  117  6.9999999999999995e-25  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6827  cell envelope-related transcriptional attenuator  27.59 
 
 
516 aa  115  2.0000000000000002e-24  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  30.72 
 
 
319 aa  115  2.0000000000000002e-24  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_007777  Francci3_1558  cell envelope-related transcriptional attenuator  25.52 
 
 
545 aa  115  2.0000000000000002e-24  Frankia sp. CcI3  Bacteria  normal  normal  0.931439 
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  37.16 
 
 
320 aa  115  2.0000000000000002e-24  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  28.34 
 
 
414 aa  115  2.0000000000000002e-24  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_014158  Tpau_0136  cell envelope-related transcriptional attenuator  29.77 
 
 
466 aa  115  2.0000000000000002e-24  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4096  cell envelope-related transcriptional attenuator  27.83 
 
 
468 aa  114  4.0000000000000004e-24  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  34.66 
 
 
307 aa  113  7.000000000000001e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  32.4 
 
 
307 aa  113  9e-24  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_013441  Gbro_3920  cell envelope-related function transcriptional attenuator, LytR/CpsA family  25.73 
 
 
734 aa  112  1.0000000000000001e-23  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_08470  cell envelope-related function transcriptional attenuator common domain protein  32.57 
 
 
394 aa  111  3e-23  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.282031 
 
 
-
 
NC_013510  Tcur_0624  cell envelope-related transcriptional attenuator  29.36 
 
 
481 aa  110  4.0000000000000004e-23  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  30.57 
 
 
390 aa  111  4.0000000000000004e-23  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3901  cell envelope-related transcriptional attenuator  31.71 
 
 
407 aa  110  6e-23  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0120062 
 
 
-
 
NC_009380  Strop_4510  transcription attenuator LytR  28.48 
 
 
420 aa  110  7.000000000000001e-23  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2100  cell envelope-related transcriptional attenuator  34.15 
 
 
393 aa  110  9.000000000000001e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  26.86 
 
 
509 aa  110  9.000000000000001e-23  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7618  cell envelope-related transcriptional attenuator  30.09 
 
 
643 aa  109  1e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  31.94 
 
 
504 aa  109  1e-22  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_013235  Namu_4529  cell envelope-related transcriptional attenuator  30.74 
 
 
365 aa  108  2e-22  Nakamurella multipartita DSM 44233  Bacteria  normal  0.25457  normal 
 
 
-
 
NC_013204  Elen_3000  cell envelope-related transcriptional attenuator  31.23 
 
 
495 aa  107  7e-22  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_01960  cell envelope-related function transcriptional attenuator common domain protein  31.54 
 
 
490 aa  106  9e-22  Slackia heliotrinireducens DSM 20476  Bacteria  hitchhiker  0.00481524  normal 
 
 
-
 
NC_013521  Sked_08560  cell envelope-related function transcriptional attenuator common domain protein  32.71 
 
 
434 aa  106  9e-22  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.511519  normal  0.633257 
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  27.01 
 
 
478 aa  106  1e-21  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0411  cell envelope-related transcriptional attenuator  26.6 
 
 
520 aa  105  1e-21  Acidothermus cellulolyticus 11B  Bacteria  normal  0.118906  normal 
 
 
-
 
NC_013235  Namu_4212  cell envelope-related transcriptional attenuator  27.33 
 
 
496 aa  105  3e-21  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.134321 
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  31.58 
 
 
573 aa  105  3e-21  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_37600  cell envelope-related function transcriptional attenuator common domain protein  28.21 
 
 
619 aa  104  4e-21  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.760055  normal  0.249296 
 
 
-
 
NC_009921  Franean1_5205  cell envelope-related transcriptional attenuator  31.36 
 
 
560 aa  104  4e-21  Frankia sp. EAN1pec  Bacteria  normal  0.0714783  normal 
 
 
-
 
NC_014158  Tpau_1061  cell envelope-related transcriptional attenuator  27.41 
 
 
567 aa  103  7e-21  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4976  cell envelope-related transcriptional attenuator  28.88 
 
 
551 aa  103  8e-21  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  28.45 
 
 
349 aa  103  9e-21  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_20880  cell envelope-related function transcriptional attenuator common domain  31.47 
 
 
296 aa  102  1e-20  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0711  cell envelope-related transcriptional attenuator  28.46 
 
 
526 aa  102  1e-20  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  31.54 
 
 
336 aa  102  2e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_013093  Amir_6348  cell envelope-related transcriptional attenuator  26.64 
 
 
517 aa  101  3e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  0.352796  n/a   
 
 
-
 
NC_007333  Tfu_2567  cell envelope-related transcriptional attenuator  33.6 
 
 
404 aa  101  4e-20  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1037  cell envelope-related transcriptional attenuator  26.68 
 
 
732 aa  100  5e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1865  cell envelope-related transcriptional attenuator  31.42 
 
 
434 aa  100  5e-20  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.0368682 
 
 
-
 
NC_013595  Sros_1363  Transcriptional regulator-like protein  24.45 
 
 
530 aa  99.8  1e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  0.640186  normal 
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  30.84 
 
 
377 aa  99  2e-19  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5902  cell envelope-related transcriptional attenuator  29.46 
 
 
625 aa  99.4  2e-19  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_5038  cell envelope-related transcriptional attenuator  31.48 
 
 
311 aa  99  2e-19  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2095  cell envelope-related transcriptional attenuator  29.97 
 
 
411 aa  99.4  2e-19  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  25.74 
 
 
468 aa  99  2e-19  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_5126  cell envelope-related transcriptional attenuator  31.48 
 
 
311 aa  99  2e-19  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0120  Transcriptional regulator-like protein  31.51 
 
 
326 aa  98.6  2e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  0.224299  normal 
 
 
-
 
NC_009077  Mjls_5418  cell envelope-related transcriptional attenuator  31.54 
 
 
311 aa  98.6  2e-19  Mycobacterium sp. JLS  Bacteria  normal  normal  0.710746 
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  26.99 
 
 
512 aa  98.2  3e-19  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  30.7 
 
 
375 aa  97.8  4e-19  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  30.7 
 
 
375 aa  97.8  4e-19  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  30.7 
 
 
375 aa  97.8  4e-19  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  30.7 
 
 
375 aa  97.8  4e-19  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0411  cell envelope-like transcriptional attenuator  28.23 
 
 
472 aa  97.4  6e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.207765 
 
 
-
 
NC_011773  BCAH820_5288  transcription antiterminator, LytR family  30.7 
 
 
375 aa  97.4  6e-19  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000327862 
 
 
-
 
NC_012669  Bcav_1167  cell envelope-related protein transcriptional attenuator  29.97 
 
 
417 aa  97.1  7e-19  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2595  cell envelope-related transcriptional attenuator  33.62 
 
 
313 aa  97.1  7e-19  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2383  cell envelope-related transcriptional attenuator  27.98 
 
 
389 aa  97.1  7e-19  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0868762  hitchhiker  0.00772059 
 
 
-
 
NC_010816  BLD_0762  transcriptional regulator  26.58 
 
 
489 aa  97.1  8e-19  Bifidobacterium longum DJO10A  Bacteria  normal  0.245721  n/a   
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  30.26 
 
 
377 aa  96.7  9e-19  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_4120  cell envelope-related transcriptional attenuator  31.21 
 
 
445 aa  95.9  1e-18  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000955467  unclonable  0.000000000378568 
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  27.03 
 
 
521 aa  96.7  1e-18  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  28.29 
 
 
481 aa  96.3  1e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_013203  Apar_0187  cell envelope-related transcriptional attenuator  27.7 
 
 
563 aa  95.9  2e-18  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.234515 
 
 
-
 
NC_013757  Gobs_3978  cell envelope-related transcriptional attenuator  31.6 
 
 
325 aa  94  7e-18  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.336706  n/a   
 
 
-
 
NC_009565  TBFG_10837  hypothetical protein  28.52 
 
 
684 aa  94  7e-18  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.000372154 
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  27.85 
 
 
409 aa  93.6  7e-18  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_008541  Arth_3228  cell envelope-related transcriptional attenuator  25.46 
 
 
377 aa  93.6  8e-18  Arthrobacter sp. FB24  Bacteria  normal  0.0471557  n/a   
 
 
-
 
NC_008699  Noca_3302  cell envelope-related transcriptional attenuator  28.74 
 
 
406 aa  93.2  1e-17  Nocardioides sp. JS614  Bacteria  normal  0.0160587  n/a   
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  32.58 
 
 
374 aa  93.2  1e-17  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6814  cell envelope-related transcriptional attenuator  27.35 
 
 
1336 aa  92.8  1e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0728  cell envelope-related transcriptional attenuator  24.13 
 
 
618 aa  92.4  2e-17  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0188197 
 
 
-
 
NC_013174  Jden_1864  cell envelope-related transcriptional attenuator  30.84 
 
 
391 aa  92  2e-17  Jonesia denitrificans DSM 20603  Bacteria  normal  0.383316  normal  0.036217 
 
 
-
 
NC_012803  Mlut_08920  cell envelope-related function transcriptional attenuator common domain protein  28.78 
 
 
381 aa  92.8  2e-17  Micrococcus luteus NCTC 2665  Bacteria  normal  0.667016  n/a   
 
 
-
 
NC_014210  Ndas_0935  cell envelope-related transcriptional attenuator  26.23 
 
 
465 aa  92.8  2e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0761113 
 
 
-
 
NC_011772  BCG9842_B5640  transcription antiterminator, LytR family  32.58 
 
 
372 aa  92.8  2e-17  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000247251 
 
 
-
 
NC_013131  Caci_7541  cell envelope-related transcriptional attenuator  27.38 
 
 
540 aa  91.7  3e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.371514 
 
 
-
 
NC_013510  Tcur_1808  cell envelope-related transcriptional attenuator  33.33 
 
 
424 aa  92  3e-17  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0292903  n/a   
 
 
-
 
NC_014248  Aazo_3223  cell envelope-like transcriptional attenuator  28.76 
 
 
471 aa  91.3  4e-17  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_30000  cell envelope-related function transcriptional attenuator common domain  30.68 
 
 
395 aa  90.5  8e-17  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4992  cell envelope-related transcriptional attenuator  30.34 
 
 
374 aa  89.7  1e-16  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2953  cell envelope-related transcriptional attenuator  30.34 
 
 
502 aa  89.7  1e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.873931 
 
 
-
 
NC_013205  Aaci_1875  cell envelope-related transcriptional attenuator  28.07 
 
 
344 aa  89.7  1e-16  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4896  cell envelope-related transcriptional attenuator  26.17 
 
 
701 aa  89.4  2e-16  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3034  cell envelope-related transcriptional attenuator  28.7 
 
 
379 aa  88.2  3e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.63975 
 
 
-
 
NC_008346  Swol_0125  putative transcriptional regulator  32.6 
 
 
380 aa  88.2  3e-16  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00440963  n/a   
 
 
-
 
NC_008726  Mvan_5665  cell envelope-related transcriptional attenuator  28.41 
 
 
306 aa  88.2  3e-16  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.0393509 
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  30 
 
 
419 aa  88.6  3e-16  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_014212  Mesil_1572  cell envelope-related transcriptional attenuator  30.63 
 
 
384 aa  88.2  4e-16  Meiothermus silvanus DSM 9946  Bacteria  hitchhiker  0.0072424  normal  0.757675 
 
 
-
 
NC_013947  Snas_6386  cell envelope-related transcriptional attenuator  27.69 
 
 
382 aa  87.8  4e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>