15 homologs were found in PanDaTox collection
for query gene Acid345_4780 on replicon NC_008009
Organism: Candidatus Koribacter versatilis Ellin345



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008009  Acid345_4780  CopG family transcriptional regulator  100 
 
 
80 aa  150  5.9999999999999996e-36  Candidatus Koribacter versatilis Ellin345  Bacteria  hitchhiker  0.00236164  hitchhiker  0.00756111 
 
 
-
 
NC_013421  Pecwa_0944  transcriptional regulator, CopG family  41.1 
 
 
81 aa  57.4  0.00000006  Pectobacterium wasabiae WPP163  Bacteria  normal  0.129226  n/a   
 
 
-
 
NC_012912  Dd1591_2452  transcriptional regulator, CopG family  41.1 
 
 
81 aa  57  0.00000008  Dickeya zeae Ech1591  Bacteria  normal  0.0142627  n/a   
 
 
-
 
NC_008009  Acid345_3557  CopG family transcriptional regulator  34.62 
 
 
82 aa  56.6  0.0000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03468  transcriptional regulator, CopG family  32.86 
 
 
82 aa  53.5  0.000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3519  transcriptional regulator, CopG family  39.73 
 
 
82 aa  52.8  0.000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2538  hypothetical protein  35.14 
 
 
81 aa  49.3  0.00002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_0580  CopG family transcriptional regulator  37.68 
 
 
90 aa  47.4  0.00007  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.499923  normal  0.646408 
 
 
-
 
NC_008463  PA14_01520  hypothetical protein  40.91 
 
 
75 aa  47  0.00008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.460812  normal  0.541168 
 
 
-
 
NC_009656  PSPA7_0201  hypothetical protein  39.39 
 
 
75 aa  45.8  0.0002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.564458  n/a   
 
 
-
 
NC_007484  Noc_0445  helix-turn-helix protein, CopG  27.78 
 
 
80 aa  42.7  0.002  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.00000022622  n/a   
 
 
-
 
NC_009436  Ent638_0479  CopG family transcriptional regulator  33.33 
 
 
82 aa  42.4  0.002  Enterobacter sp. 638  Bacteria  normal  normal  0.416299 
 
 
-
 
NC_008009  Acid345_1125  CopG family transcriptional regulator  37.78 
 
 
118 aa  41.2  0.005  Candidatus Koribacter versatilis Ellin345  Bacteria  decreased coverage  0.00000121555  unclonable  0.00000692901 
 
 
-
 
NC_009832  Spro_0055  CopG family transcriptional regulator  33.33 
 
 
82 aa  40.4  0.007  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_0720  transcriptional regulator, CopG family  25.76 
 
 
89 aa  40  0.01  Chlorobium phaeobacteroides BS1  Bacteria  normal  unclonable  0.0000059078 
 
 
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