Gene Aazo_4404 details

Gene Information

• Locus tag: Aazo_4404
• ID: 9342206
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: 'Nostoc azollae' 0708
• Kingdom: Bacteria
• Replicon accession: NC_014248
• Strand: +
• Start bp: 4484284
• End bp: 4487784
• Gene Length: 3501 bp
• Protein Length: 1166 aa
• Translation table: 11
• GC content: 41%
• Product: transcription-repair coupling factor
• Protein accession: YP_003722842
• Protein GI: 298492665

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.353859
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCTTTT CTTCTATTGT GCGTGCCTTG GCGCGATCAC CTCTCACCGC CGAACTAATT 
ACCAAACTCA AAAAGTACCA AGAATTGCGG TTAAATGGCA TTTCCCGTTT ACCCAAGGGT 
CTGGTAGCTT CAGCTTTAGC CAACAATGAG GGTAGGGATT TGTGCGTGGT CTGTGCCACT 
CTCGAAGAAG CCGGACGGGT TTATGCCCAA ATGGAAGCGA TGGGATGGAA AACTGTGCAT 
TTTTACCCTG CCGCAGAAGC TTCTCCCTAT GAACCTTTTG ACCCGGAAAC TGAGTTAAGT 
TGGGGACAAA TGCAGGTTTT AGCCGATTTG GTCAATGGTC AATGGTCAGT CGTCAGTAGT 
CAGTTACCTA ATAGGAATAC GGCCATTATT GCTACTGTAG GCGCATTACA ACCGCATTTA 
CCACCTCTAG AGGTATTTAG ATCTTTTTGT CTGTCCTTAA AAAAGGGTCT GGAATACGAT 
TTAGATGAGT TCAGTGAAAA AATCACCAGT TTGGGCTATG AACGGGTGCC GTTGGTGGAA 
ACGGAAGGAC AATGGAGTAG ACGGGGAGAT ATTGTGGATG TGTTTCCTGT TTCCTCGGAG 
TTACCAGTGC GGTTGGAATG GTTTGGGGAT GAAATCAAAC AAATTCGGGA ATTTGATCCC 
GCCACTCAAC GTTCTGCTTT AGATAAAGTT GAACAAATAT TTCTTACCCC AACAAGTTTT 
TCAGGGATTG TTTTGGCAGC ACTCAAACAG AGTTCTGAGT TTCGTGTGTT GAGTGCTGAC 
TTAAATTCTG ATGTAGATGA TTTGGAAAAT TTAGGACTGG AGGGAAGCAG GCGTTTTCTA 
GGGTTAGCTT TTGCCAAACC CGCTTCACTT TTAGATTATT TATCAGCAAA TACCCTTATT 
GCCATTGATG AGGTAGAACA GTGTCATGCC CATAGCGCTC GCTGGGTGGA AAATGCGGAT 
AGTCAGTGGA GACTTGGGAC TGGGGAAGAA TCTCAGCAAG TTCCCAAAAT TCATCGGACT 
TTTAATGAGT GTTTAGATGA AGCTGGAAAT TTTCAAAAGT TATATTTATC AGAATTAGCG 
GAAGAAAACA GCGGTACTAA TTTAGCTAGT AGACCTTTAC CTGTAACACC TCACCAGTTT 
GCCAAGTTAG CTGAGAAAAT TAGACAGGAA CGCGATCGCA AGTTTGCAGT TTGGCTAATT 
TCTGCTCAAC CTTCCCGTTC TGTTTCTCTA CTCCAAGAAC ATGATTGTCC TGCCCAGTTT 
ATCCCTAATC CCCGTGATTA TCAAGCGATT GGTAAACTAC AAATAAATCA TACGCCTATT 
GCACTCAAAT ATTCTGGTTT AGCAGAATTA GAAGGTTTCA TTTTACCTTC TTTCCGTCTT 
GTTATTGTTA CCGATCGCGA ATTTTATGGA CAACATTCCT TAGCGGATTT TGGTTATGTC 
CGCAAACGTC GCAAAGCTAT ATCTAAACAA GTTGATACCA ATAAATTACG ACCAGGAGAT 
TTTGTTGTTC ATCGTAGTCA CGGCATTGGT AAATTTGTCG AACTAGAAAG TTTAACAATT 
AATAATGAAA CCCGTGATTA TTTAGTTATT CAATATGCCG ATGGTTTGTT GAAAGTTGCT 
GCTGATAAAG TTGGTTCTCT ATCTCGGTTT AGAACCAGTG GAGATCAAAC ACCCGCACTA 
CATAAAATGA CGGGTAAAGC TTGGGATAAT ACCAAGAATA AAGTCCGTAA GGCGATTAAG 
AAATTAGCAG TAGATTTGTT AAAGTTGTAT GCTGCGCGAT CGCAACAACA AGGGTTTGCT 
TATCCCGCAG ATATGCCTTG GCAGGAAGAA ATGGAAGATT CTTTTCCATA CCAAGCTACC 
ACCGATCAGC TAAAAGCGGT GCAAGATGTG AAACGGGATA TGGAAAGTGA AAGACCGATG 
GATCGGTTAG TGTGTGGTGA TGTGGGTTTT GGTAAAACTG AAGTTGCAAT TCGGGCTATT 
TTCAAAGCTG TTACCGCAGG TAAACAAGTC GCAGTTTTAG CACCAACAAC TATTTTAACC 
CAACAACATT ATCACACAAT CAAAGAACGT TTTTCACCTT ATCCTGTAAA TGTGGGTTTA 
CTTAATCGTT TTCGTAGTGC GGAAGAAAAG CGTAATATTC AAAAGCGTCT GGCTACTGGA 
GAATTAGATA TTGTTGTAGG GACACATCAA TTATTAGGTA AAGGTGTACA ATTTCGAGAT 
TTGGGACTGT TGGTAATTGA TGAGGAACAA AGATTTGGTG TGAATCAAAA GGAAAAAATC 
AAAAGCCTGA AAACTCAAGT TGATGTTTTA ACTCTTTCTG CGACTCCCAT TCCCAGAACT 
TTGTATATGT CTTTATCTGG CATTCGGGAA ATGAGTTTAA TTACCACACC ACCTCCCACC 
AGAAGACCAA TTCAAACCCA TCTTGCACCT TTAAACCCGG AAATTGTCAG AAGTGCAATT 
CGGCAAGAAT TAGATAGAGG AGGGCAGGTT TTTTATGTAG TTCCGCGAGT GGAGGGAATT 
GAAGAAACAA CTGCAAATTT GCGAGAAATG ATACCGGGGG GAAGATTTGC AATCGCACAC 
GGTCAAATGG AAGAAAGCGA GTTAGAATCA ACCATGCTCA CCTTCGGAAA TAATGACGCT 
GATATCCTAG TTTGCACAAC AATCATTGAA TCCGGTTTAG ATATTCCGCG AGTTAACACA 
ATTTTAATTG AAGATGCTCA CCGTTTTGGT TTAGCTCAAT TATATCAATT ACGTGGTCGT 
GTGGGACGTG CAGGAATACA AGCTCACGCA TGGTTATTTT ATCATAAACA GCGTGAATTA 
TCCGATGCAG CCAGACTAAG ATTAAGAGCA ATTCAAGAAT TTACCCAACT CGGTTCTGGA 
TATCAATTAG CAATGCGAGA TATGGAAATT CGTGGTGTGG GTAACTTGTT AGGTGCAGAA 
CAGTCAGGTC AAATGGATGC AATCGGATTT GACTTGTACA TGGAAATGTT AGAGGAAGCA 
ATTCGAGAAA TTAGAGGTCA AGAAATACCC AAAGTTGATG ATACCCAAAT TGACCTTAAT 
CTCACCGCGT TTATTCCTTC CACTTACATT ACCGATATTG ACCAAAAAAT GAGTGCTTAT 
CGTGCAGTAG CAACTGCAAA ATCCAAAGAA GAATTAAAAT CCATTGCCGC GGAATGGACT 
GATAGATATG GAACTATACC AGTTCCAGCA AATCAACTCT TGCGAGTTAT GGAATTAAAA 
CAATTAGCGA GAAATATAGG ATTTAGCCGC ATTAAACCTG AGAACAAACA GCATATTGTG 
TTAGAAACAC CAATGGAAGA ACCAGCTTGG AATTTGTTAG CAGAAAATTT GACTGAAACT 
ATGCGAAATC GCTTTGTTTA TTCCAGTGGA AAGGTGACAG CAAGAGGTTT AGGTGTGTTG 
AAAGCCGAAC AACAATTGCA AACTTTAATA GATGCTTTCG GAAAAATGCA AGGTGCTATT 
CCTGAAGCAG TTTTAGTTTG A 

 

Protein sequence

MAFSSIVRAL ARSPLTAELI TKLKKYQELR LNGISRLPKG LVASALANNE GRDLCVVCAT 
LEEAGRVYAQ MEAMGWKTVH FYPAAEASPY EPFDPETELS WGQMQVLADL VNGQWSVVSS 
QLPNRNTAII ATVGALQPHL PPLEVFRSFC LSLKKGLEYD LDEFSEKITS LGYERVPLVE 
TEGQWSRRGD IVDVFPVSSE LPVRLEWFGD EIKQIREFDP ATQRSALDKV EQIFLTPTSF 
SGIVLAALKQ SSEFRVLSAD LNSDVDDLEN LGLEGSRRFL GLAFAKPASL LDYLSANTLI 
AIDEVEQCHA HSARWVENAD SQWRLGTGEE SQQVPKIHRT FNECLDEAGN FQKLYLSELA 
EENSGTNLAS RPLPVTPHQF AKLAEKIRQE RDRKFAVWLI SAQPSRSVSL LQEHDCPAQF 
IPNPRDYQAI GKLQINHTPI ALKYSGLAEL EGFILPSFRL VIVTDREFYG QHSLADFGYV 
RKRRKAISKQ VDTNKLRPGD FVVHRSHGIG KFVELESLTI NNETRDYLVI QYADGLLKVA 
ADKVGSLSRF RTSGDQTPAL HKMTGKAWDN TKNKVRKAIK KLAVDLLKLY AARSQQQGFA 
YPADMPWQEE MEDSFPYQAT TDQLKAVQDV KRDMESERPM DRLVCGDVGF GKTEVAIRAI 
FKAVTAGKQV AVLAPTTILT QQHYHTIKER FSPYPVNVGL LNRFRSAEEK RNIQKRLATG 
ELDIVVGTHQ LLGKGVQFRD LGLLVIDEEQ RFGVNQKEKI KSLKTQVDVL TLSATPIPRT 
LYMSLSGIRE MSLITTPPPT RRPIQTHLAP LNPEIVRSAI RQELDRGGQV FYVVPRVEGI 
EETTANLREM IPGGRFAIAH GQMEESELES TMLTFGNNDA DILVCTTIIE SGLDIPRVNT 
ILIEDAHRFG LAQLYQLRGR VGRAGIQAHA WLFYHKQREL SDAARLRLRA IQEFTQLGSG 
YQLAMRDMEI RGVGNLLGAE QSGQMDAIGF DLYMEMLEEA IREIRGQEIP KVDDTQIDLN 
LTAFIPSTYI TDIDQKMSAY RAVATAKSKE ELKSIAAEWT DRYGTIPVPA NQLLRVMELK 
QLARNIGFSR IKPENKQHIV LETPMEEPAW NLLAENLTET MRNRFVYSSG KVTARGLGVL 
KAEQQLQTLI DAFGKMQGAI PEAVLV