| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CA2559_05100 |
|---|
| Symbol | |
|---|
| ID | 9296512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Croceibacter atlanticus HTCC2559 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014230 |
|---|
| Strand | + |
|---|
| Start bp | 1156765 |
|---|
| End bp | 1159053 |
|---|
| Gene Length | 2289 bp |
|---|
| Protein Length | 762 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | |
|---|
| Product | alpha-amylase |
|---|
| Protein accession | YP_003715784 |
|---|
| Protein GI | 298207605 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.443393 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTCGAG TAAAACACAT AGTGCCCTTT AGCTTAGTAT TATTAGGACT ATTAGCTGTG
TCTTGTAACA CTAAAGGAAA AGCATTAGGA CAGCCTTCTG TTATTAAAGG TATGGCAACG
CCAATACGTT TAGACGTAGA TAGTACATCT GTATTGCTAA CAGATTATTT TTTAAATGTT
TCTGAAATAG ATTCAACAAG TACCACTAAA GGATTTGAAA CTTCCATAGA TAAAGACAAG
ACAACACTCA AACTAAAAAC CTTAGCAAAC GCACCAGCAT TGGGCAATCT AAGAGTGTGG
TCAAATGGTG TAGCTAATGA TATACCGTTA TTTAAAAGCG CTAAAGAATC TAAAACAATT
TCATTTAAAG CTGAAGAAAA TCAGTTTCAA ACTGTTCAGC TAAAGGGAGA ATTTACAAAT
TGGGGCACAC AACCAATGCG CTATGCAAAT GGAGAATGGA CATATAGTGA AATTTTTAAT
CCTGGAAATC ATCAATATGT TCTTATCGCA GATGGTAAGG AAATGAATAA TCCAGATGAT
ACAGAAACTG TTGATAATGG TATGGGCGGC ACTAACTCTG TTATTTCTAT TGGCAATAAG
AATGCGTTAA AGCCAGAGCT TTCTACGGGA AAGAATAATG TGTCTGCTTT CACAGTAAAG
ATTAAAAATA ACTACAACAC TGTTTTAGCA TATTTAGACA ATCAACTTAT TGATGGTTCG
TATGAAGAAA CAGATTCAGA TGAAATCTAT ATAAAAATCC CAAAAGGCTT AAAAGGGCGT
CATCTTATAA GAGTGTATGC ATCTAATATA AACGGAAGAG GTAATGATAT TTTAGTACCT
CTTGAAAATA GTAGTGTTAT AAGTGATGCA TCTAAATTAG AACGTACAGA TTTTCACACT
CAGATTATGT ATTTCTTAAT GGTAGATCGT TTTAAAGACG GCGATTTAAC CAATACTAAA
AAAGTTGATA ACGACAGTAT TTTACCAAAA GCCAATTATT ATGGTGGCGA TTTACAAGGT
GTTTTAGACA AGATAAAAGA CGGTTATTTT AAAGAATTAG GAATTAATAC TGTGTGGTTG
TCACCAATAA CACAAAATCC CGAAGGCGCA TATGGTTTGT GGCCAGAACC TTTAACCAAA
TTTTCTGGAT ATCACGGATA TTGGCCCATT AGCAATACAA AAATAGACTA CCGCTTTGGA
GATGAGGCCT TGTTTAAAGA GCTTATTGAA GAAGCTCACA AACAAGATAT GAATGTTTTG
CTGGACTATG TGGCAAATCA CGTTCATGAA GAACATCCAT TGTATAAAGA GCATCCAGAA
TGGGCAACAG AGTTATACTT GCCAGATGGT ACGCTAAATA CAGAACGTTG GGATGATCAT
AGATTAACAA CTTGGTTTGA TACGTTTATG CCAACACTTG ATTTTAGCAA GCCAGAAGTG
GTAGAAACTA TGACAGATTC TGCAGCTTAT TGGGTTACAA ATTATGATTT AGATGGCTTT
CGTCACGATG CCACAAAGCA CATTCAATTA GACTTTTGGC GTACGCTAAC ACGTAAAGTT
AAAGAACGCA CAGACAGACC TATTTATCAA ATAGGAGAAA CCTACGGTAG TTATGAGCTA
ATTAATAGTT ACATAAACAC AGGAATGCTA GATGCGCAAT TCGATTTTAA CCTATACGAT
GCAGAAGTAT CAACCTTTGC TAAAAATGAA ACCTCTTTTG AGCGTTTAGC AAATACCTTG
CAACAAGGCT TAAATTATTA TGGAAGTCAT CATTTAATGG GGAATATTTC AGGTAACCAA
GATAAGGCGC GCTTTATAAG TTATGCTTCT GGAGACGTAA GTTTTGAAGA AGATGCAAAA
AAAGCAGGTT GGACACGTGA AATTACTATG AGTGACACTA CGGCGTACAA AAAGTTGGCA
CAGTTGCAGG CCTTCAACCT ATCTGTACCA GGTATTCCAG TAATTTATTA CGGAGATGAG
TATGGTAGTA TTGGTGGTAA TGACCCAGAT AACAGACGTA GGATGAAGTT TGAAAACTTA
AACAATCAAG AAACTCAGCT TAAAAACACT GTAACATCAT TAGTTAATAA GCGTAGAAAC
TCAATGGCAC TTCAATATGG AGAAACCAAA ATTTTAAGAG CAGATAAAGA GGTGATGATT
ATTGAGCGAA ACTATTTTAC AGAAGAAGTA TATGTTGTTT TTAATAAAAC AAATAAAGCT
CAAGATATAA ACGTAGATGG TAATACCATA ACAGTTGAAG CAAACGGATT TAATTTTTTC
GAAAAATAA
|
|---|
| Protein sequence | MIRVKHIVPF SLVLLGLLAV SCNTKGKALG QPSVIKGMAT PIRLDVDSTS VLLTDYFLNV
SEIDSTSTTK GFETSIDKDK TTLKLKTLAN APALGNLRVW SNGVANDIPL FKSAKESKTI
SFKAEENQFQ TVQLKGEFTN WGTQPMRYAN GEWTYSEIFN PGNHQYVLIA DGKEMNNPDD
TETVDNGMGG TNSVISIGNK NALKPELSTG KNNVSAFTVK IKNNYNTVLA YLDNQLIDGS
YEETDSDEIY IKIPKGLKGR HLIRVYASNI NGRGNDILVP LENSSVISDA SKLERTDFHT
QIMYFLMVDR FKDGDLTNTK KVDNDSILPK ANYYGGDLQG VLDKIKDGYF KELGINTVWL
SPITQNPEGA YGLWPEPLTK FSGYHGYWPI SNTKIDYRFG DEALFKELIE EAHKQDMNVL
LDYVANHVHE EHPLYKEHPE WATELYLPDG TLNTERWDDH RLTTWFDTFM PTLDFSKPEV
VETMTDSAAY WVTNYDLDGF RHDATKHIQL DFWRTLTRKV KERTDRPIYQ IGETYGSYEL
INSYINTGML DAQFDFNLYD AEVSTFAKNE TSFERLANTL QQGLNYYGSH HLMGNISGNQ
DKARFISYAS GDVSFEEDAK KAGWTREITM SDTTAYKKLA QLQAFNLSVP GIPVIYYGDE
YGSIGGNDPD NRRRMKFENL NNQETQLKNT VTSLVNKRRN SMALQYGETK ILRADKEVMI
IERNYFTEEV YVVFNKTNKA QDINVDGNTI TVEANGFNFF EK
|
|---|
| |