Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CA2559_02560 |
Symbol | |
ID | 9295997 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Croceibacter atlanticus HTCC2559 |
Kingdom | Bacteria |
Replicon accession | NC_014230 |
Strand | - |
Start bp | 601404 |
End bp | 604784 |
Gene Length | 3381 bp |
Protein Length | 1126 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | |
Product | transcription-repair coupling factor |
Protein accession | YP_003715278 |
Protein GI | 298207099 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAGA CATCTATTTC CCAAGCCTTT TCTCGGTCTC CTCAATTCAG GAAACTGCAG GACACTATTG CCCAATCTCA AGAAAATTAT CATAAAACAA CCCTTACAGG ACTTGTTGGA TCTGCCGTAT CTTTTGCTAT TGCAGAAGCT TTTAAGCAAG CAGACAAACC ATTCTTGGCC ATATTTAACG ATAAGGAAGA AGCAGCTTAT TATTTAAATG ATTTTGAGCA ACTTATAAAA GATGATGAGG TGCTGTTTTA TCCCGGAAGC TACAGAAGAC CTTACCAAAT AGAAGAAACA GATAATGCCA ATGTACTACT TAGGGCTGAG GTTTTAAACA GACTTAATTC CAGAAGAAAA CCAGCCTTAA TCGTTACCTA TCCAGATGCA CTTTTTGAAA AGGTGGTAAC CAAAAAGGAG TTGGAGAAAA ACACGCTAAA ACTTAGTGTT GGAGAACAGG TTTCTATTGA TTTTGTGAAT GAAGTATTGT TTGAGTACAA GTTTCATCGT GTAGATTTTG TTACTGAACC AGGCGAATTT TCTTTACGTG GTGGTATTTT AGATGTATTT AGCTTTAGTC ACGATGAGCC TTTTAGAATT GAATTTTTTG GGGATGAAGT AGATAGCATA AGAACTTTTG ATGTAGAGAC ACAGTTGTCT TTAGAGCAAA CCAAAAAAAT TTCGATAATA CCTAATGTCG AAAATAAGTT GCTTCAAGAA TCTAGAGAAA GCTTCTTGAA ATATATTCAT CATAAAACTA TCATCTTCAG TAAAAATACA GAGCTTGTAT TTGGAAGAAT AGATTCAAAC TTTGATAAGG CTGTACAAGC TTTTAAAACA TTAAATGCAG AAACTAAACA CAGTGAACCA GAAGAGTTAT TTGCTACAGG AGCACTGTTA AAAGAGCAAC TTAAAGGATT TACGCATTTT GAAATTTTAA ATAAAAGTAC TGGTGCGGCA GACACCATAC AATTTCATAC AAGACCACAA CCAAGCTTTA ATAAGCAATT TAATTTGCTT ATTGAAAATT TAAATGAAAA CCATGAAGAT GGTTATCACA ACTATATAGC TTGCGTAAGT GAACAGCAAG CCAAGCGTTT TCATGATATT TTTGATGATG CAGAGCTTAA CGTAAAGCAA TATGAAACAG TAACAGTTTC TTTATACCAA GGTTTTATAG ATGATGAAAG TAATAGCGTT TGCTATACAG ATCATCAAAT TTTTGAGCGT TATCATAAAT TTAATTTAAA GAATGGCTAT GCTAAAAAAC AAGCCATTAC TTTAAAAGAG CTAACCAACC TTACTGTGGG AGATTATGTT ACACATATAG ATCACGGTAT TGGAAAATTT GGTGGTCTAC AGAAAATTGA TGTTGAGGGT AAGAAGCAAG AAGCTATTAA GTTAATTTAT GGAGATAGAG ATATTCTTTA CCTAAGCATA CATTCACTAC ACAAAATAAC CAAGTATAAT GGCAAAGATG GGCAAGCACC TAAAGTTTAT AAATTAGGTA GCCAAGCTTG GAAAAAACTG AAACAAAAAA CCAAGTCTAA GGTTAAGGAA ATAGCTTTTA ACCTTATAAA ATTATATGCA AAACGACGCC TAGAAAAAGG GTTTGCATTT GGTCCAGATA CCACAATGCA ACTTGAGTTA GAATCTTCTT TTATATATGA AGACACACCG GATCAAAGTA GTGCTACAGA AGATGTAAAA AAAGATATGG AAAACGAGCG GCCAATGGAT CGCTTAGTTT GTGGTGATGT AGGTTTTGGT AAAACCGAAA TTGCCATAAG AGCAGCATTT AAGGCTGTAG ATAATGGTAA GCAAGTAGCA GTTTTAGTAC CAACTACAAT CTTGGCGTTT CAGCATCATA AAACATTTAG TGAACGTTTA AAAGATTTTC CTGTCACGGT GGAATATTTA AATAGGTTTA GAAGCGCTAA AGAACGACGA GAAACCATAG CAGATTTAGA GGCAGGTAAG GTAGATATCA TTATAGGAAC TCACCAATTA GTAAATAAGA CTGTAAAGTT TAAAGATTTA GGGCTGTTAA TTGTAGATGA AGAACAAAAA TTTGGTGTGG CTGTAAAAGA CAAGCTAAAA ACCATAAAAG AAAATGTAGA CACACTTACC TTAACAGCAA CACCAATACC TAGAACGCTT CAGTTTAGTT TAATGGCTGC AAGAGATTTA AGTACCATTA CAACGCCACC ACCAAACAGA TATCCTGTTG AGACTAATGT AATTAGATTT TCAGAAGAAA GTATTCGTGA TGCTGTGCAA TATGAAATAC AACGAGGCGG TCAAGTTTAT TTTGTACACA ACCGTATAGA AAACATTAAG GAAGTTGCTG GTATGATACA ACGTGTAGTG CCAGATGCAA AAATTGGAAT TGGTCACGGC CAAATGGAAG GAAAAAAACT GGAGCAACTT ATGCTAAGTT TTATGAATGG AGATTTTGAT GTTCTAGTGT CTACTACAAT TATTGAAAGT GGTTTAGATG TACCAAATGC CAATACCATA TTTATAAACA ATGCCAATAA CTTTGGTCTT TCAGATCTTC ACCAAATGCG TGGCCGTGTT GGTCGTAGTA ATAAAAAGGC ATTCTGTTAT TTTATTACAC CACCATATTC TGCAATGACA GATGATGCCA GAAAACGTAT TACAGCGTTG GAGCAATTCT CAGATTTAGG AAGCGGTTTT AATATAGCCA TGAAAGATTT AGAAATTCGT GGAGCAGGAG ATTTACTTGG AGGTGAGCAA AGCGGATTTA TAAATGAAAT TGGTTTCGAT ACCTATCAGA AAATTTTAAA TGAAGCTATT GAAGAGCTTA AGGAAACAGA ATTTAAAGAT CTTTACGACA CTAAAGAAGA AGATAGAGTT TTCTTAAAAG ACACCACTAT AGATACAGAT ATTAGCCTTT TATTTCCAGA TGATTATATA AATAATATTT CTGAACGCTT AAACCTTTAT ACAGAGCTAA ACTCTATTTC TGAAGAGAAG GAACTTGAGG CATACGAAAA ACGCCTGTTA GATCGTTTTG GAGAGTTGCC ACAACAAGCA GAAGATTTAT TAAACTCTGT AAGGGTAAAA TGGATAGCTA CGCAAGTGGG TATTGAAAAG CTAATACTTA AGCAAGGTAA AATGATTGGC TACTTTATAA ACGATCAACA AAGTCCTTTT TACCAAAGTA ATACCTTTAC TAAGGTTTTA CAATATGTGC AAACACATCC TCGTCAAGTA GTTATGAAAG AAAAGAAAAC AAGAAACGGC TTAAGGCTTT TAGTTACTTT TGATAAAGTA AAGACAATTG ATAAGGCTTT AGAAGTTTTA AAACCTTTAG ATTTTAAGTC TCAAAAAGCA CAACAAGAAC AAGTGTCTTA A
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Protein sequence | MSKTSISQAF SRSPQFRKLQ DTIAQSQENY HKTTLTGLVG SAVSFAIAEA FKQADKPFLA IFNDKEEAAY YLNDFEQLIK DDEVLFYPGS YRRPYQIEET DNANVLLRAE VLNRLNSRRK PALIVTYPDA LFEKVVTKKE LEKNTLKLSV GEQVSIDFVN EVLFEYKFHR VDFVTEPGEF SLRGGILDVF SFSHDEPFRI EFFGDEVDSI RTFDVETQLS LEQTKKISII PNVENKLLQE SRESFLKYIH HKTIIFSKNT ELVFGRIDSN FDKAVQAFKT LNAETKHSEP EELFATGALL KEQLKGFTHF EILNKSTGAA DTIQFHTRPQ PSFNKQFNLL IENLNENHED GYHNYIACVS EQQAKRFHDI FDDAELNVKQ YETVTVSLYQ GFIDDESNSV CYTDHQIFER YHKFNLKNGY AKKQAITLKE LTNLTVGDYV THIDHGIGKF GGLQKIDVEG KKQEAIKLIY GDRDILYLSI HSLHKITKYN GKDGQAPKVY KLGSQAWKKL KQKTKSKVKE IAFNLIKLYA KRRLEKGFAF GPDTTMQLEL ESSFIYEDTP DQSSATEDVK KDMENERPMD RLVCGDVGFG KTEIAIRAAF KAVDNGKQVA VLVPTTILAF QHHKTFSERL KDFPVTVEYL NRFRSAKERR ETIADLEAGK VDIIIGTHQL VNKTVKFKDL GLLIVDEEQK FGVAVKDKLK TIKENVDTLT LTATPIPRTL QFSLMAARDL STITTPPPNR YPVETNVIRF SEESIRDAVQ YEIQRGGQVY FVHNRIENIK EVAGMIQRVV PDAKIGIGHG QMEGKKLEQL MLSFMNGDFD VLVSTTIIES GLDVPNANTI FINNANNFGL SDLHQMRGRV GRSNKKAFCY FITPPYSAMT DDARKRITAL EQFSDLGSGF NIAMKDLEIR GAGDLLGGEQ SGFINEIGFD TYQKILNEAI EELKETEFKD LYDTKEEDRV FLKDTTIDTD ISLLFPDDYI NNISERLNLY TELNSISEEK ELEAYEKRLL DRFGELPQQA EDLLNSVRVK WIATQVGIEK LILKQGKMIG YFINDQQSPF YQSNTFTKVL QYVQTHPRQV VMKEKKTRNG LRLLVTFDKV KTIDKALEVL KPLDFKSQKA QQEQVS
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