Gene Ndas_5258 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNdas_5258 
Symbol 
ID9249156 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardiopsis dassonvillei subsp. dassonvillei DSM 43111 
KingdomBacteria 
Replicon accessionNC_014211 
Strand
Start bp421530 
End bp422708 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content72% 
IMG OID 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003683144 
Protein GI297564171 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.669447 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGCCC TGCCCGACCG CCCCCCGCCC CCCGAGGAGC CCCGGGGCGC CACCGCCGCC 
GGACCCGGGG GCCCCGAGGC CCCGGCAGCC GCGGACCCGC GGGGCGAGGC GCCCCAGCGG
GTGCTCGTCT GGCGGCGCTT CCGCCGCAAC AAGCTGGCCG TCACCGGTGC GCTCGTGCTG
TGCGCGCTGG TCCTGGTGTC GGTGTTCTCC GAGTTCGTCG CGCCCAGCAC ACCGGGCGCC
TACAACGCCG ATCGCACCTA CGCCCCGCCG CAGACGCTGC GCGTCGTGGA CACCTCCGAC
GGGTTCGACC TGGGCATGTA CGTGTACGGC TACCAGGTGG AACGCGACCC CGAGACGCTC
GCCAACACCT ACACCGTCGA CGAGTCCGTG AAGATCCCGG TCGGCCTGTT CGTGCGCGGC
GAGCCCTACG AGATGTGGGG CCTGATCCCC TCGGACGTCC ACCTGATCGG CGCCAGCGAC
CCGGACCAGG AGGTCTACTT CCTGGGCGCC GACCGCAACG GCCGCGACAT GGCATCCCGG
ATCGTCTACG GCACCCGGGT GTCGATGTCC ATCGGCCTGG CCGGGGTCGC GCTGTCCTTC
GTCCTGGGAC TCGTGCTCGG CGGTCTGTCC GGCTACCTGG GCGGGCGCGT GGACAACGCC
ATCCAGCGCG TCATCGAGTT CCTGATGTCC ATCCCGACGA TCCCGCTGTG GATGGGCCTG
TCCGCCGCCG TCCCCCGCGA GTGGGGGTCG GTGCAGACCT ACGTCGCCAT CACCGTGCTC
CTGTCGCTCA TCGGCTGGAC CGACCTGGCA CGCGTGGTGC GCGGCCGGTT CCTGTCGCTG
CGCCAGGAGG ACTTCGTGAC GGCCGCCCGG CTGGACGGCT GCGGCACCGG GCGGGTCATC
GCCCGCCACA TGCTGCCGTC CTTCGCCAGC CACATCATCG CCTCGCTGAC CCTGGCCGTG
CCGTTCATGA TCCTGGCCGA GACCTCACTG TCCTTCCTGG GCCTGGGTCT GCAGGCGCCG
GTCGTGAGCT GGGGCGTCCT GCTCCAGGAG GCGCAGAACA TCCACTCGAT CGCGGGCGCC
CCCTGGCTGC TGCTGCCCGG GGCCGCGGTG ACGGTGGCGG TGCTGGTGCT CAACTTCGTC
GGCGACGGCG TCCGCGACGC CGCCGACCCG TACAGGTGA
 
Protein sequence
MAALPDRPPP PEEPRGATAA GPGGPEAPAA ADPRGEAPQR VLVWRRFRRN KLAVTGALVL 
CALVLVSVFS EFVAPSTPGA YNADRTYAPP QTLRVVDTSD GFDLGMYVYG YQVERDPETL
ANTYTVDESV KIPVGLFVRG EPYEMWGLIP SDVHLIGASD PDQEVYFLGA DRNGRDMASR
IVYGTRVSMS IGLAGVALSF VLGLVLGGLS GYLGGRVDNA IQRVIEFLMS IPTIPLWMGL
SAAVPREWGS VQTYVAITVL LSLIGWTDLA RVVRGRFLSL RQEDFVTAAR LDGCGTGRVI
ARHMLPSFAS HIIASLTLAV PFMILAETSL SFLGLGLQAP VVSWGVLLQE AQNIHSIAGA
PWLLLPGAAV TVAVLVLNFV GDGVRDAADP YR