| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_3185 |
|---|
| Symbol | |
|---|
| ID | 9247042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | - |
|---|
| Start bp | 3811178 |
|---|
| End bp | 3811759 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | |
|---|
| Product | Peptidoglycan-binding domain 1 protein |
|---|
| Protein accession | YP_003681099 |
|---|
| Protein GI | 297562125 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00515387 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACCA CCACCGGGCG GGCCGCATCC CTCCTCGCGG CCGCCGCCCT CGCCGCGACC
ACCGCCCTCG CCACCGCGCC CGCCGCCCTG GCGGACGACA TCGACCAGAC CTCCCCCGAG
GTCCTCGCCG CCATCGAGTC CCAGGTCTGG CCCGAGTACA CCCTCGGCGA CTCCAGCATC
GACGTCTACG CCGCCAAGAT GCTGCTCTCC TCGGGTGAGA TCAACCCCGG CGAGCTCAAC
CTGGAGTTCG ACCAGGACCT GCACGACACC CTCGTCACCT ACCAGGAGGC CTTCGGCCTG
CACAACGACG GCGACCTCAA CCCCGACACC TGGGAGCACT TCCAGGAGCT GGTCTTCGGC
CAGCACCAGT TCCGCCGCGG GGACACCGGC CCGGTCGTCA CCATGATCCA GCGCGAGCTC
AACGCCAAGT TCAACGCCCA CCTGGCCACC GACGGCGTCT ACGGACCCGC CACCGAGCGG
GCCGTCCGCG CCGCCCAGGA GCACTTCGGC ATCGGCGTCG ACGGCGTCTT CGGGCCCGTC
TCCTTCCACG CCGTGATCAG CTACCAGGAC TACGCCCGCT GA
|
|---|
| Protein sequence | MSTTTGRAAS LLAAAALAAT TALATAPAAL ADDIDQTSPE VLAAIESQVW PEYTLGDSSI
DVYAAKMLLS SGEINPGELN LEFDQDLHDT LVTYQEAFGL HNDGDLNPDT WEHFQELVFG
QHQFRRGDTG PVVTMIQREL NAKFNAHLAT DGVYGPATER AVRAAQEHFG IGVDGVFGPV
SFHAVISYQD YAR
|
|---|
| |