| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_1895 |
|---|
| Symbol | |
|---|
| ID | 9245745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | + |
|---|
| Start bp | 2312487 |
|---|
| End bp | 2314211 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_003679829 |
|---|
| Protein GI | 297560855 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.757129 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACGAGG ATTCCGGTAC GTACAGCGAT TCGACCGGTG TGTCAGGTCA ACACCGGCTC
CTCGCGGAGG CGCTGGACAG CCTGAGCGCG GGTGTGTACG CCGTCGACGA GAGGGAGCGG
ATCGTCGCGG TCAACGCCAC CGCCCTGCGA CTGCTGGCCC GTTCGGCGGA CGAGACGCTC
GGGCAGGACC TCCGGTCGTT GCACCGGGAC GCCCGGGGGC AGGCGGTCGT CAGGGAGGCA
CGCGACGCCT CCCAGGGGGC GCCGTCCGGT TCCCTCTCCC GCGCGGGGGA GTCCTGGTTC
CAGCGCGGCG ACGGCACGCT CCTCCCCGTG TCGTGGTCCG CCGTGCCCTG TAAGCCCGAC
GGTTCCCAGG TCACGGAGCT GGTCTTCTTC CAGGCCGTCG AGCAGGACGA GGGGACCCCC
GGGCGCTCCA CCCCTTCCCG ACGGACACTG TCGGAGACGG AGCGGCTGGC CCTGCTGGCC
GACACCACCG CACACCTGAT CAACAACGTC GACGTGGAGA AGTCCCTGCT CCGGGTGGTG
GAGCTGATGC TTCCACGACT CGCGGACTGG GCGATCATCG ACCTGATCAC CGAAGGCGAC
GAGGTGTCCC GCTCCCTGGT GGTCCAGGCG GACCAGGGCA GGACCACGGT GCGCGAGGAC
CTCCAGGGAC CGATGCCCCC GGTGCCCCCG ACCTCCAGCA TGCCCCTGTC CAAAGCCCTG
CGAGGCGCCG CCTCCACCCT CGTCAAGCGT GAGATCTACT CCGGTCCGCC CGACACGGGT
ATCGCGGTGG AGCAGCGCAG GCTGTTCGAG GCGACGGGCA TCAACACCGC GGCCATCGCC
CCCATCCGCG GGCCCCGGGA GGTGCTGGGC GCCGTGACCC TGGGGCGCAC GGGCTCCCAG
CACCCCTTCG CCCGCGACGA TCTCGCCCTT CTGGAGGACA TCGCCCGACG CATCGGCCTG
GCCCTGGAGA ACGCGCGCCA CTACCAGCGC CAGCGCCAGG TCGCCGAGAC CATGCAGCGC
TACCTGCTGC CCCAGCTCCC CCGGCTGGCG GGAGCGGAGA TGACCGCCCG GTACCTGCCC
GCACCAGACG TCTCGCACGT GGGCGGTGAC TGGTACGACG CCTTCCCCCT GCCCCGCGGC
GACACGGCCC TGGTCATCGG CGACGTCGTC GGCCACGACC TGGACGCGGC GGCCGGGATG
GCCCAGCTCC GCAACATGCT CCGGGCCTAC ACCTGGGCAC AGGAGCAGTC CCCCCACCGC
ACGCTGGAGC GCATGGACCA GGCCCTGGAG CACATCAGCG ACGTCTACAT GGCGACCCTC
GTCCTGGCCC ACCTGACGGT CGACGAGGCC GGACGGTGGG AACTGCTGTG GTCGAGCGCC
GGCCACCCCC CGCCCCTGCT CGTCCACCAC GACGGCATCG CCCACTACCT GGAGGAGGGG
AGCGGGGTCC TGCTCGGCAC GGGGATGGCG CGGCCGCGCG CCGACGCGCG CATCGCCCTG
CCGCCCGGGT CCACGCTCGT GTTCTACACG GACGGCCTGG TCGAAGCCCG GGGGCAGTCA
CTGGACACGG GCCTCAGACG TATGCGCCAG CACGCGGCCT CCCTCGCGCA CCGCCCCCTG
AACTCCTTCG CCGACCAGCT GCTGGAGCGC GCACGGCCGA GAAGCAACGA CGACGACGCC
GCCCTGCTCG TCATCCGTAT TCCGGCGGAC GCGACCGACG GCTGA
|
|---|
| Protein sequence | MDEDSGTYSD STGVSGQHRL LAEALDSLSA GVYAVDERER IVAVNATALR LLARSADETL
GQDLRSLHRD ARGQAVVREA RDASQGAPSG SLSRAGESWF QRGDGTLLPV SWSAVPCKPD
GSQVTELVFF QAVEQDEGTP GRSTPSRRTL SETERLALLA DTTAHLINNV DVEKSLLRVV
ELMLPRLADW AIIDLITEGD EVSRSLVVQA DQGRTTVRED LQGPMPPVPP TSSMPLSKAL
RGAASTLVKR EIYSGPPDTG IAVEQRRLFE ATGINTAAIA PIRGPREVLG AVTLGRTGSQ
HPFARDDLAL LEDIARRIGL ALENARHYQR QRQVAETMQR YLLPQLPRLA GAEMTARYLP
APDVSHVGGD WYDAFPLPRG DTALVIGDVV GHDLDAAAGM AQLRNMLRAY TWAQEQSPHR
TLERMDQALE HISDVYMATL VLAHLTVDEA GRWELLWSSA GHPPPLLVHH DGIAHYLEEG
SGVLLGTGMA RPRADARIAL PPGSTLVFYT DGLVEARGQS LDTGLRRMRQ HAASLAHRPL
NSFADQLLER ARPRSNDDDA ALLVIRIPAD ATDG
|
|---|
| |