| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_1444 |
|---|
| Symbol | |
|---|
| ID | 9245294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | + |
|---|
| Start bp | 1769213 |
|---|
| End bp | 1770196 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_003679382 |
|---|
| Protein GI | 297560408 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.133087 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGTCGG CGCCTGAACA CACCGCTCCG CCGCTCGCCG GGATCGGCGA CGAGGCGGCG
CCCGACCTCG ACGGACAGCT CGCCGCCCTC GCCGAACTCG GCTGGAACCG CCTGGAACTG
CGCACCGTGG ACGGGACCGC CCTGGCCGCC CTGGACGAGC GGGCCTTCGA CCGCGCCGCC
GGACGGATCC GCGAGGCCGG GACCGACGTG GTCGCCGTCG CCTCCCGCAT CGCCGACTGG
TCCAGGCCCG CCACCGGGGA CTTCGCCCCC GACCTGGCCG AACTGGACGT CCTGGCCCGG
CGCTGCGCGG TGCTGGGCAC CCGGCTGGTC CGGGTCATGT CCTACCCCCG CGACGGGCTC
CCCGAGGCCG AGTGGGGGCG GCGCGTCCGC GTCCGCCTGC GCGAACTGGC CCGCCGTGCC
GAGGACGCGG GCCTGGTGCT CGTGCACGAG AACTGCGCGG GCTGGGCGGG GGACCGCGCC
GACCGCGCCC TGGAACTGCT GGCCGAGGTG GACAGCCCGG CCCTGCGGCT GCTGTTCGAC
ACCGGCAACG GCGTCGCCCA CGGCTACCGC GCCCCGGAGA TGCTGCGCGA GCTCCTCGAC
CACGTGGCGC ACGTGCACGT CAAGGACGCC GTCACCGCGC CCGACGGCGG GGTCGACTAC
GTCCCGCCCG GCCGGGGGGA GGCCGGAACC GTCGAGTGCC TGCGGCTGCT GGCCGCGCAC
GGCTACACCG GAACGCTGTC CATCGAGCCC CACCTGCACC TGCGCCCGCA CCTGCGGGTC
TCGGGCGCCG ACCCCGGCCG CGGCGACCGG CCCGCCTTCG TCGCCTACGG GCGCGCCCTG
GAGGACCTCG TGGCCCGCAC CTGGCACACC GGAGGCGGCC CCGCCAGGGG CACGGGCCAC
CATGGCGGGG ACGCGGACCC TCACGCCGCG ACCGGGGCCG CCCGTACCGC CGACGGCCTC
CACCGCACCG AGGGGGTCCG GTGA
|
|---|
| Protein sequence | MPSAPEHTAP PLAGIGDEAA PDLDGQLAAL AELGWNRLEL RTVDGTALAA LDERAFDRAA
GRIREAGTDV VAVASRIADW SRPATGDFAP DLAELDVLAR RCAVLGTRLV RVMSYPRDGL
PEAEWGRRVR VRLRELARRA EDAGLVLVHE NCAGWAGDRA DRALELLAEV DSPALRLLFD
TGNGVAHGYR APEMLRELLD HVAHVHVKDA VTAPDGGVDY VPPGRGEAGT VECLRLLAAH
GYTGTLSIEP HLHLRPHLRV SGADPGRGDR PAFVAYGRAL EDLVARTWHT GGGPARGTGH
HGGDADPHAA TGAARTADGL HRTEGVR
|
|---|
| |