| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_1092 |
|---|
| Symbol | |
|---|
| ID | 9244938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | - |
|---|
| Start bp | 1339828 |
|---|
| End bp | 1342098 |
|---|
| Gene Length | 2271 bp |
|---|
| Protein Length | 756 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | |
|---|
| Product | exopolysaccharide biosynthesis protein-like N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase |
|---|
| Protein accession | YP_003679040 |
|---|
| Protein GI | 297560066 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.830982 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACCTGT CCCGCCCAAG GCCCCCGGGC CCCGTCCGCT CGGCGGCGCT CCCCGTCATC
GCCGTGCTCG TCGCGCCCAT GGTCCTGGCC GCTCCGTCGT CCCGGGTGAC GGCCGACGTC
GCCGCGCCGG CGGGCGGGAT CGCCGGGGCC GTGGAGGAGC GGATCGCCGC CGGGGTGGAC
CTCGCCTCCG GTCCCGTCCC GGGCGCCGGG GGCGGCGGGG AGCAGTTCGC CAGCCTCCTC
ACCGTCGACC TCACCGAGGG TGTCGGGGTC GAGTACGTCG ACGGGGGCGG CCTCACCTCC
CCCGCGACGG TCGCGGACAT GGCCGCCGCC GTCGAGCCCC CGGAGGGGTC CACCGTGGTC
GCCGCGGTCA ACGGCGGCTA CTTCGACATC GGCGCGACCC AGGCCCCCCT GGGCGCCGGG
ATGAGCGACG GGCGCCTGCT CACCTCGCCC GACCCGGGGT TCGCCAACGC CGTGGTCATC
GACGCCGGGG GCAGGGGCAG CGTGCGCCAG GTGGCCTTCG AAGGGACCGC GTCCCTGCCG
TCGGGGGACC TCGACATCGA CGCCCTCAAC ACCTCCGCCG TCCCCGCGGA CGGCCTCGGT
CTGTACACGT CGGACTGGGG CGGCCACCCC CGCGCACACG TGGTGTACGA ACCCGGGACC
AGCCCCGGGG ACACGGCCGT CGCCGAGGCC GTGGTCTCCG AGGGCGTCGT CGAGCGGGTC
AGCGTCACCC CCGGCAGCGG CCCGATCGAG GAGGACGAAC AGGTCCTGGT GGCGCGCGGC
TCCGCGGCGG AGCGGATCGC CGACCTGTCC GAGGGCGACC CGGTCGAGGT GGAGCACACC
CTCACGGCCG AGGGCGCCGA ACCCCGCGTC GTCGTGGGCG GACGGCACGT GCTGGTGCGC
GACGGCGAAC CCGTCCCCGT CGAGGACGTC TCCCGCGCGC CGCGTACCGC GATCGGGTTC
TCCGAGGACG GCGAGGTCAT GCACGTGGTG ACCGCGGACG GGCGCAACCG CGGCCACGCC
GGATCCACGC TCGCGGAGGT CGCCGAACTG CTCGCCGCGT CCGGGGCCGA GCAGGCCCTG
GAGCTGGACG GCGGCGGATC CTCGACCCTG CTCGTGCGCG AACCCGGGGG CGTCTCCCCG
GTGCTGCGCA ACCGCGCCGG GGACCAACTC CGGGAGGTCC CCGACGGCCT TGTGATCACG
GCGACCGAGG GCTCGGCCCG GACCTCGGGC CTGTGGCTGC GGCCCGCCCT GGAACCCCGG
CCCGAACACG GCTCCCCCGT GCCGCCCCAG GCCGACCCCC GACGCGTGTT CACCGGCATG
CACCGCACCC TGGCCGCCAC CGGGCACGAC GAGGCCTTCG GGCCGTCCGG GCCCGGCGCG
CCCCGCTCCC CCGACGACCG CACCGATGAG CTGGAGCTGT CCGCGCCCAC CGGACACGGC
GACGGCCCCC GGTTCGTGGC GGGAGACCCC GGACCGGTGA CCGTCACGGG GCGGGCGGGC
CGGGTCAGCG ACACCGTCGA CCTGGAGGTG CTGCCCGCCC CGGACACGCT CCTCGCCGCA
CCCCGGCGCC TGGGCATGGC CTCCGCCGAG GACACCGCCT CCTTCGTGCT CACCGGGGCC
ACCGAGGACG GGCGGCGGGC GCCCGTCGAA CCGGTCGACG CACGGGTCGA GGCCGTCCCC
GACCTGGTCG AGGTCGTGGA CCGGGGCGAC GGAGGCTTCG AGGTGCGGCC GCGCGCCGGG
GAGGGGACGG GCGTCCTCAC GGTGACCGCG GGCGGGGTGA GCACGCGGAT ACCGTTCTCC
ATCGGTACGC GGACGACTCC CCTGGCGGAC TTCGAGGACG CGCGGGAGTG GACGGCGCGG
TCCGCGCGCG GCGGGGCAGA GGTGCGCCCC GTGGCCGGGC GCGACGGCCC CGGTCTGGCC
CTGGCCTACG ACTTCACCCG CGACATCCGC ACCCGGACCG CCTCCGCCCA CCCGCCCGAG
CCGCTCGCCC TGGACCGCCA GGCCTTCGCG TTCACGGTGG GCGTGCGCGG CGACGGCAAC
GGCGCCCGTC TCATGCTCAG CCTCACCGAC GCGCACGGTG TCGGCCACTC CCTGGAGGGC
CCCGCCGTGG ACTGGGAGGG CTGGCGCGAC GTGCGCCTGG AGGTGCCCGA GGACGTCGGG
CACCCGGTCA CGGTCTCGCG GGTGTACCTG CTGGAGGAGG ATCCGAGCCG GGCCTACGCG
GGTGAGGTGG TGCTGGACGG CCTCACCGCC CGGACCACGA CGGGGCCCTG A
|
|---|
| Protein sequence | MNLSRPRPPG PVRSAALPVI AVLVAPMVLA APSSRVTADV AAPAGGIAGA VEERIAAGVD
LASGPVPGAG GGGEQFASLL TVDLTEGVGV EYVDGGGLTS PATVADMAAA VEPPEGSTVV
AAVNGGYFDI GATQAPLGAG MSDGRLLTSP DPGFANAVVI DAGGRGSVRQ VAFEGTASLP
SGDLDIDALN TSAVPADGLG LYTSDWGGHP RAHVVYEPGT SPGDTAVAEA VVSEGVVERV
SVTPGSGPIE EDEQVLVARG SAAERIADLS EGDPVEVEHT LTAEGAEPRV VVGGRHVLVR
DGEPVPVEDV SRAPRTAIGF SEDGEVMHVV TADGRNRGHA GSTLAEVAEL LAASGAEQAL
ELDGGGSSTL LVREPGGVSP VLRNRAGDQL REVPDGLVIT ATEGSARTSG LWLRPALEPR
PEHGSPVPPQ ADPRRVFTGM HRTLAATGHD EAFGPSGPGA PRSPDDRTDE LELSAPTGHG
DGPRFVAGDP GPVTVTGRAG RVSDTVDLEV LPAPDTLLAA PRRLGMASAE DTASFVLTGA
TEDGRRAPVE PVDARVEAVP DLVEVVDRGD GGFEVRPRAG EGTGVLTVTA GGVSTRIPFS
IGTRTTPLAD FEDAREWTAR SARGGAEVRP VAGRDGPGLA LAYDFTRDIR TRTASAHPPE
PLALDRQAFA FTVGVRGDGN GARLMLSLTD AHGVGHSLEG PAVDWEGWRD VRLEVPEDVG
HPVTVSRVYL LEEDPSRAYA GEVVLDGLTA RTTTGP
|
|---|
| |