| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_0497 |
|---|
| Symbol | |
|---|
| ID | 9244338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | + |
|---|
| Start bp | 613369 |
|---|
| End bp | 617319 |
|---|
| Gene Length | 3951 bp |
|---|
| Protein Length | 1316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | ATP-dependent helicase HrpA |
|---|
| Protein accession | YP_003678450 |
|---|
| Protein GI | 297559476 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.663387 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCA CCACGCCCGC GCCCGCCGCG GACACGCTGC GTTCCCGGCT GCGCGACCTC
ATGCCCTCGG ACCGCCACCG GCTCCGTCGG CGTATCGACG GCCTGGCCAA GATCGGCGAC
GAGCGCCGCC GCGCCTCCGT CGCCGCCCAG ATCTCCGGGG ACGTCGACGA GGCGCTCCTG
CGCGTGAACC TGCGCCGCGA GTCCGTGCCC GAGCTGAGCT ACCCCGAGTC CCTGCCGGTC
AGCTCCCGGC GCGACGACAT CGCCGAGGCC ATCCGCGACC ACCAGGTCGT CATCGTCGCC
GGTGAGACCG GCTCGGGCAA GACCACCCAG CTGCCCAAGA TCTGCCTGGA GCTCGGGCGC
GGCGTCATGG GCACCATCGG CCACACCCAG CCCCGGCGGC TGGCCGCCCG CACCGTCGCC
GAGCGCATCG CCGAGGAGAT CGGCACCCCG CTGGGCGAGA CGGTCGGTTA CAAGGTCCGC
TTCACCGACT CCTCCAGCGA CAGCACCCTG GTCAAGCTGA TGACCGACGG CATCCTGCTC
GCCGAGATCC AGCACGACCG CATGCTGCGC CAGTACGACA CGCTCATCAT CGACGAGGCC
CACGAGCGCA GCCTCAACGT CGACTTCCTT CTGGGCTACC TCAAACAGCT GCTGCCCCGG
CGCCCCGACC TCAAGGTCGT CATCACCTCG GCCACCATCG ACCCCGAGCG CTTCTCCCGC
CACTTCGACG ACGCCCCCAT CGTCGAGGTC TCCGGGCGCA CCTACCCGGT CGAGGTCCGC
TACCGGCCCA TCTCCGAGGA GATCCTCGAC CCCGAGGAGA AGAACCCGGG CGGCGGCACC
GACCGCGACC AGACCCAGGC CATCCTGGAC GCCGTGGACG AGCTCGGCCG CGAGGCCCCC
GGCGACGTGC TGGTCTTCCT CAGCGGCGAG CGCGAGATCC GCGACACCGC CGAGGCCCTG
GAGAAGAGGA AGCTCCCGGG AACCGAGGTC CTGCCGCTCT ACGCGCGCCT GTCCACGAGC
GAGCAGAGAC GCGTGTGGTC CTCGCACAGC GGACGGCGCA TCGTCCTGGC CACCAACGTC
GCCGAGACCT CCCTGACCGT CCCCGGCATC AAGTACGTCA TCGACCCCGG CACCGCGCGC
ATCTCCCGCT ACTCCCACCG CACCAAGGTG CAGCGCCTGC CCATCGAGGC GGTCTCCCAG
GCCTCCGCCA ACCAGCGCAA GGGCCGCTGC GGCCGCGTCT CGGAGGGCAT CTGCATCCGG
CTGTACTCGG AGGAGGACTT CCTCTCCCGC CCCGAGTACA CCGACCCCGA GATCCTGCGC
ACCAACCTGG CCTCGGTCAT CCTCCAGATG GCCGCCCTGG GGCTGGGCGA CGTCGCGGCC
TTCCCGTTCG TGGACGGCCC CGACCACCGC CAGATCAAGG ACGGCGTCAA CCTCCTCAAC
GAGCTGGGCG CCCTGCACCC CGACGAGTCC GGGGGCAAAC GCAGGCTCAC CCCGATGGGC
CGCCGCCTGG CCCAGCTGCC CATCGACCCC CGCCTGGGCC GGATGGTCCT GGAGGCCGAG
GAGCGCGACT GCCTGGGCGA GGTCCTGGTC ATCACCGCGG CCCTGTCCAT CCAGGACCCG
CGCGAGCGGC CCACGGACAA GCAGCAGCAG GCCCAGCAGG CGCACGCCAG GTTCACCGAC
AAGGAGTCGG ACTTCCTGGC CTACCTCAAC CTGTGGAACC ACCTGCGCGA GAAGCAGCGG
GAGCTGTCGG GCAACCAGTT CCGCAGGTTG TGCCGCGATG AGTACCTCAA CTACCTGCGC
GTACGCGAGT GGCAGGACAT CCACGGCCAG CTCAGGCAGG TCCTGCGCTC CATGGGAGTG
GAGGTGCCGC ACCCCCGCGA GGAGGCCGCC GACCCCCGCG GCGTGCACAT GTCCCTGCTG
GCCGGACTCC TGTCGCACGT GGGCCTCAAG GACCCCGAGA AGCACGAGTA CCTGGGCGGA
CGGGGCGCCC GCTTCGCCGT CTTCCCCGGT TCGGCGCTGT TCAAGAAGCA GCCCCGCTAC
GTGATGGCCG CCGAACTGGT GGAGACCTCC AAGCTCTGGG GCCGCATGGT GGCCCGGATC
GAACCCGAGT GGGCCGAGGA GCTGGCCGGG GACATCGTCA AGCGCAGCTA CAGCGAGCCG
CACTGGGAGC GCAAGCGCGG CGCCGTCATG GCCTTCGAGC GCGTCACCCT CTACGGCGTG
CCCATCGTCG TGCAGCGCAA GGTCTCCTAC GGAAGGATCG ACCCCGAACT GTCCCGGGAG
CTGTTCATCC GCCGCGCCCT GGTCGAGGGC GACTGGGAGA CCCGCCACCA CTTCTTCCAC
GACAACCGCA AGCTCCTGGA CGAGGTGGAG GACCTCGAAC ACCGCGCCCG GCGCCGCGAC
ATCGTCGTGG ACGACGAGAC GCTGTTCCAG TTCTACGACG CCCGCCTGCC GGACTCGGTG
GTCTCGGCCG CGCACTTCGA CTCCTGGTGG AAGAAGGCCC GCCGCACCGA GCCCGAGCTG
CTGGACTTCA CCCGCGAGGA ACTCATCAAC GAGGGCGCGG GGGCGATCAG CGAGGACGAC
TACCCGGACG TGTGGCGCCA GGGCGAGTTC ACCTTCCCGC TCAGCTACCA GTTCGAGCCG
GGCAGCGACT CCGACGGCGT CACCGCGCGC GTCCCGGTGA AGTTCCTCAA CCAGGTGGAG
GACACCGGGT TCGACTGGCA GATCCCGGGT CTGCGCGACG AGCTGGTGAC CGCGCTCATC
CGCTCGCTGC CCAAGCCGCT GCGCCGCAAC TTCGTCCCCG TCCCGGACAA CGCCGCCCGC
GCCCTGGCCG GGCTGGTCCC CTACGAGGGG CCGCTCACGG CGGCGCTGGC CGCCGAGCTG
ACCCGGATGG CGGGGGAGCG GATCGCCCCC GGCGACTTCC AGCTGGACCG GGTGCCCGAC
CACCTGCGCA TCACCTTCCG GGCCGTGGAC GACCGGGGCC GGACCCTGGC CGAGTCCAAG
GACCTGGAGA AGCTGCGCGC CAAGCTCAAA CCGCGCCTGC GCGAGGCCAT CTCGGCCGAG
GCCAAGGGCG TGGAGAAGAA GGGCCTGACC TCCTGGGACT TCGGCCCGCT GGAGCAGACC
CTGGAGCGCA AGGCGCTGGG GCCCAAGGTC AAGGGCTACC CGGCGCTCGT GGACGAGGGC
GACAGCGTCG CGATCCGCAT CTTCGACACC CGTCCCGAAC AGCGCGCCGC GATGTGGGCG
GGCACCCGCC GACTGCTGCT GCTCACCGTG CCGTCCGTGG CGAACGTGGT GAGCAAGGGG
CTCAACAACC CCGACAAGCT GGCCCTGGCC GACAACCCGC ACGGTTCGAT CCGCAGGATG
CTCGACGACG CCGAGGCGGC CGCGGTCGAC CACCTGCTCG CCCGCGAGGG CGGGCCGGTG
TGGAACGGCG AGGACTTCGC CAAGCTCGCC GACCGGGTGC GCGCCGACCT CGGCGACACC
CTGGCCGAGA TCCTGGACAG GTCCGCGCGC GTCCTGGTGC TGTGGCGCAA GGTGTCCAAG
AAGGTCAAGG GGACCACGTC CCTGGCGGTG CTGCCCTCGC TCAACGACGT GCAGGGCCAG
CTCGGCGACC TGGTGGGCGA GGGGTTCGTG ACCCGCACCG GCCTGGCCCG CCTGGACGAC
CTGCACCGCT ACCTGCGCGG GGTGGAGTAC CGGCTGAACA AGCTGCCGGA GAACCCGCGC
CGCGACCAGG TGAACATGTC CAAGGTGGAG CAGATGCGCC AGGCCGTGGC CAAGCTGCGC
GGGAGCCTGC CGCCCGGCCG CGCGGCCGAC CCGGACGTGG CGGAGCTGCG CTGGATGCTG
GAGGAGTACC GGGTGAGCCT GTTCGCGCAG GAGCTGCGCA CGGCCTACCC GGTCTCGGAC
AAGCGCATCC TGAAGGCGGT CGAGGCCGTC AAGGCCGCCG AACGCAAGTA G
|
|---|
| Protein sequence | MSTTTPAPAA DTLRSRLRDL MPSDRHRLRR RIDGLAKIGD ERRRASVAAQ ISGDVDEALL
RVNLRRESVP ELSYPESLPV SSRRDDIAEA IRDHQVVIVA GETGSGKTTQ LPKICLELGR
GVMGTIGHTQ PRRLAARTVA ERIAEEIGTP LGETVGYKVR FTDSSSDSTL VKLMTDGILL
AEIQHDRMLR QYDTLIIDEA HERSLNVDFL LGYLKQLLPR RPDLKVVITS ATIDPERFSR
HFDDAPIVEV SGRTYPVEVR YRPISEEILD PEEKNPGGGT DRDQTQAILD AVDELGREAP
GDVLVFLSGE REIRDTAEAL EKRKLPGTEV LPLYARLSTS EQRRVWSSHS GRRIVLATNV
AETSLTVPGI KYVIDPGTAR ISRYSHRTKV QRLPIEAVSQ ASANQRKGRC GRVSEGICIR
LYSEEDFLSR PEYTDPEILR TNLASVILQM AALGLGDVAA FPFVDGPDHR QIKDGVNLLN
ELGALHPDES GGKRRLTPMG RRLAQLPIDP RLGRMVLEAE ERDCLGEVLV ITAALSIQDP
RERPTDKQQQ AQQAHARFTD KESDFLAYLN LWNHLREKQR ELSGNQFRRL CRDEYLNYLR
VREWQDIHGQ LRQVLRSMGV EVPHPREEAA DPRGVHMSLL AGLLSHVGLK DPEKHEYLGG
RGARFAVFPG SALFKKQPRY VMAAELVETS KLWGRMVARI EPEWAEELAG DIVKRSYSEP
HWERKRGAVM AFERVTLYGV PIVVQRKVSY GRIDPELSRE LFIRRALVEG DWETRHHFFH
DNRKLLDEVE DLEHRARRRD IVVDDETLFQ FYDARLPDSV VSAAHFDSWW KKARRTEPEL
LDFTREELIN EGAGAISEDD YPDVWRQGEF TFPLSYQFEP GSDSDGVTAR VPVKFLNQVE
DTGFDWQIPG LRDELVTALI RSLPKPLRRN FVPVPDNAAR ALAGLVPYEG PLTAALAAEL
TRMAGERIAP GDFQLDRVPD HLRITFRAVD DRGRTLAESK DLEKLRAKLK PRLREAISAE
AKGVEKKGLT SWDFGPLEQT LERKALGPKV KGYPALVDEG DSVAIRIFDT RPEQRAAMWA
GTRRLLLLTV PSVANVVSKG LNNPDKLALA DNPHGSIRRM LDDAEAAAVD HLLAREGGPV
WNGEDFAKLA DRVRADLGDT LAEILDRSAR VLVLWRKVSK KVKGTTSLAV LPSLNDVQGQ
LGDLVGEGFV TRTGLARLDD LHRYLRGVEY RLNKLPENPR RDQVNMSKVE QMRQAVAKLR
GSLPPGRAAD PDVAELRWML EEYRVSLFAQ ELRTAYPVSD KRILKAVEAV KAAERK
|
|---|
| |