| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_0004 |
|---|
| Symbol | |
|---|
| ID | 9243830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | + |
|---|
| Start bp | 5627 |
|---|
| End bp | 6760 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | |
|---|
| Product | DNA replication and repair protein RecF |
|---|
| Protein accession | YP_003677963 |
|---|
| Protein GI | 297558989 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.780515 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00205006 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTACGTAT CCCACCTGCA ACTGGCCGAC TTCCGGTCCT ACCGCGAGGC CCTCGTGGAG
ATGGGCCCCG GCGTGAGCGT GTTCGTCGGC GCCAACGGCC AGGGCAAGAC CAATCTGGTC
GAGGCGATCG GCTACGTGGC CACCCTCGGC AGCCACCGGG TCTCCTCCGA CACCCCGCTG
GTCCGCCAGG GCGCCCCCCG CGCGATCGTC CGGGCCAAGG TGGTGCGCGA CGAGCGGTCC
ATGGTCGTGG ACCTGGAGCT CAACCCCGGC AGGGCCAACC GGGCCCGGAT CAACCAGGCG
CCCGCGGGCC GTCCGCGCGA GGTCCTGGGG ATCCTGCGCA CCGTGCTCTT CGCCCCGGAG
GACCTGGCCC TGGTCAAGGG CGACCCCGGC GAGCGGCGCC GGTTCCTGGA CGACCTGCTG
GTGGCGCGCG CGCCCCGGAT GGCGGGCGTG CGCTCGGACT ACGACCGGGT GCTCAAGCAG
CGCAACGCCC TGCTCAAGTC GGCCTCCGGC CGGATGTTCC GCCAGCGCTC GGCGCCCGAC
CTGAGCACGC TGGAGGTGTG GGACTCCCAC CTGGCGGAGA CGGGCGCGGA GCTGCTGGCG
GCGCGGCTGG AGCTGGTGGA GGAGCTGCGC CCGAGGATCG CCGAGGCCTA CGCCGGGCTG
ACCGACTCCG GGGGCCCGGC CGTCCCCGAC TACCGCAGCG GCGCGGTCCC CGAGGGGGTC
GAACCGCCGA CCGGCCGTCC ACAGCTTGTG GAAACCCTGC GCGCGGCCAT GGCCGAGGCC
CGCGACCGCG AGCTCCAGCG CGGCGTCAGC CTGGTGGGCC CGCACCGCGA CGATCTGGTC
CTGCGACTGG GCGGGATGCC CGCCAAGGGC TACGCCAGCC AGGGCGAGTC CTGGTCGTAC
GCCCTCTCGC TCAAGCTGGC CGCCTTCGAC CTGCTGCGCT CCGACGGAGA CGACCCGGTG
CTGATCCTGG ACGACGTGTT CGCCGAGCTG GACAGCGAGC GCCGCCGCAG GCTGGCCGAG
CGCGTCGGCG ACGCCGAACA GGTCCTGGTG ACCGCGGCCG TGCCCGAGGA CATCCCCAAG
GAGCTGGACG GGGCCCGGTT CGGCGTGCGC GAGGGGGGCG TCGCGGGTGA GTGA
|
|---|
| Protein sequence | MYVSHLQLAD FRSYREALVE MGPGVSVFVG ANGQGKTNLV EAIGYVATLG SHRVSSDTPL
VRQGAPRAIV RAKVVRDERS MVVDLELNPG RANRARINQA PAGRPREVLG ILRTVLFAPE
DLALVKGDPG ERRRFLDDLL VARAPRMAGV RSDYDRVLKQ RNALLKSASG RMFRQRSAPD
LSTLEVWDSH LAETGAELLA ARLELVEELR PRIAEAYAGL TDSGGPAVPD YRSGAVPEGV
EPPTGRPQLV ETLRAAMAEA RDRELQRGVS LVGPHRDDLV LRLGGMPAKG YASQGESWSY
ALSLKLAAFD LLRSDGDDPV LILDDVFAEL DSERRRRLAE RVGDAEQVLV TAAVPEDIPK
ELDGARFGVR EGGVAGE
|
|---|
| |