Gene Tpau_4197 details

Gene Information

• Locus tag: Tpau_4197
• ID: 9158385
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Tsukamurella paurometabola DSM 20162
• Kingdom: Bacteria
• Replicon accession: NC_014158
• Strand: -
• Start bp: 4324112
• End bp: 4326115
• Gene Length: 2004 bp
• Protein Length: 667 aa
• Translation table: 11
• GC content: 68%
• Product: oligopeptide transporter, OPT family
• Protein accession: YP_003649105
• Protein GI: 296141862

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCAGTC CGGCTTCCGC CGCGCCGCGA TCCGGCGTAC ACGAGCTGAC AGTCCGCGGC 
ATCGCTCTCG GTGCCGTCAT CACGCTCGTC TTCACCGCCG CCAACGCCTA CCTGGGGCTG 
AAGGTGGGCC TGACCTTCGC CACATCGATT CCGGCGGCGG TCATCTCGAT GGCATTGCTG 
CGCTACTTCG CGAACCACTC GATCATCGAG AACAACATCG TGCAGACGAT CGCGTCGGCC 
GCGGGAACGC TTTCGGCCAT CGTGTTCATC CTGCCGGGCC TGGTGATGAT CGGCTGGTGG 
CAGGGCTTCC CGTACTGGAC CACCACCCTG GTCTGCCTCG TCGGCGGCGT GCTCGGCGTC 
ATGTACTCGA TCCCGCTGCG GCGAGCCCTG GTGACCGGGT CCGACCTCCC GTTCCCCGAA 
GGCGTGGCCG CCGCCGAGGT GCTCAAGGTG GGCGATACCG CCGAGGGAGC CCAGGAGAAC 
AAGACCGGCC TGCGCCTGAT CCTGCTCGGC TCGCTCGCCT CCGCGGGCTA CGCCCTGCTC 
GGCAAGATGA AGGTGGTCGC CGAGTCCATC TCGATCCCGG TGAAGATCGG TAGTGGTGGC 
ACCATCGTGG TCCCCGGCCT GTCCTTCGCG CTGATCGGCG TGGGCCACCT CGTGGGCGTC 
ACCGTGGGCA TCGCGATGAT CGTGGGCCTG GTCATCTCCT ACTTCGTGCT CCTGCCCATC 
TGGACCTCCG GCGAGCTCGG CGGCGGCGAG GCCTTCTCGG ACGTCGTCAA CGGCATCTTC 
AAGAACGACA TCCGGCTGAT CGGCGCCGGC GCCATCGCGG TGGCCGCCGT GTGGACCCTG 
GTGAAGATCC TCGGGCCGGT GCTGCGCGGC GTCGCCGAGT CGATCGCCTC GGCGCGCAAA 
CGGCGCGACG GCGAACTCGT CGACATCACC GAGCGCGATA TCCCGTTCCC CTACGTGGCC 
GGGATCGTCC TGGTCTCCAT GGTCCCGATC GGCGTGCTGC TGTGGCTGTT CACCACCGAC 
ACCCCACTCG ACGGCAAAGC CGGCGGCATC ATCACACTCA GCGTGCTGTT CGTGCTCGTC 
CTGGGCTTGC TGGTCGCCTC GGTGTGCGGC TACATGGCCG GTCTGATCGG CGCCTCCAAC 
AGCCCCATCT CGGGCGTCGG CATCCTTGTG GTGCTCGCCG CGGCGCTGCT CATCCGCGCG 
GTCTACGGCC CGTCGAGCGG TGACGAGACC ATCGCGCTCG TCGCGTACAC GCTGTTCACT 
GGCGCCATCG TGTTCGGCAT CGCCACCATC TCCAACGACA ACCTGCAGGA CCTCAAGACC 
GGCCAGTTGG TGGGCGCCAC CCCGTGGAAG CAGCAGGTGG CCCTCGTGAT CGGTGTGGCC 
TTCGGTTCGG CGATCATCCC GCCGGTGCTC GGAGTGCTGC AGAAGGGCTT CGGCTTCGCG 
GGCGCCCCGG GCGCGGGTGA CAATGCGCTC GCCGCCCCGC AGGCCTCGCT GCTCGCGAAG 
CTCTCCGAGG GTGTTTTCGG CGGCGACCTC GACTGGGGAC TCATCGGCCT CGGCGCCCTG 
ATCGGCGTTG TGGTCATCGT GATCGACGAG ACGCTCGCCC GCTCCGGCAA GTTCCGGCTG 
CCCCCGCTCG CGGTGGGCAT GGGGATGTAC CTGCCGATGA GCGTGACCTT GATGATCCCG 
ATCGGCGCCG CGATCGGGTA CTACTACAAC CGCTGGGCCG ACCGCTCCGA CAACGCCGAG 
GGCCGCAAGC GGCTCGGCAC GCTCATGGCG ACCGGTCTCA TCGTGGGTGA GTCGCTGTTC 
GGCGTGCTCT ACGCTGGCAT CGTCGTGCTG GCGGACCGCG TTCCCGATCT GCCGATCATC 
GGTGGCAAGG AAGAGCCGCT GGCGCTGCCC TTCATCGGCG AGGGCTACCT GCACTGGGGC 
GAGGCGCTCG GCGCGATCCT GTTCGCCGCC ATCGTCTACG CGCTGTACAC CCGGACGAAG 
AAGGTCGCCG CCGCCGAGGC CTGA 

 

Protein sequence

MSSPASAAPR SGVHELTVRG IALGAVITLV FTAANAYLGL KVGLTFATSI PAAVISMALL 
RYFANHSIIE NNIVQTIASA AGTLSAIVFI LPGLVMIGWW QGFPYWTTTL VCLVGGVLGV 
MYSIPLRRAL VTGSDLPFPE GVAAAEVLKV GDTAEGAQEN KTGLRLILLG SLASAGYALL 
GKMKVVAESI SIPVKIGSGG TIVVPGLSFA LIGVGHLVGV TVGIAMIVGL VISYFVLLPI 
WTSGELGGGE AFSDVVNGIF KNDIRLIGAG AIAVAAVWTL VKILGPVLRG VAESIASARK 
RRDGELVDIT ERDIPFPYVA GIVLVSMVPI GVLLWLFTTD TPLDGKAGGI ITLSVLFVLV 
LGLLVASVCG YMAGLIGASN SPISGVGILV VLAAALLIRA VYGPSSGDET IALVAYTLFT 
GAIVFGIATI SNDNLQDLKT GQLVGATPWK QQVALVIGVA FGSAIIPPVL GVLQKGFGFA 
GAPGAGDNAL AAPQASLLAK LSEGVFGGDL DWGLIGLGAL IGVVVIVIDE TLARSGKFRL 
PPLAVGMGMY LPMSVTLMIP IGAAIGYYYN RWADRSDNAE GRKRLGTLMA TGLIVGESLF 
GVLYAGIVVL ADRVPDLPII GGKEEPLALP FIGEGYLHWG EALGAILFAA IVYALYTRTK 
KVAAAEA