| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_4142 |
|---|
| Symbol | |
|---|
| ID | 9158330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | - |
|---|
| Start bp | 4272034 |
|---|
| End bp | 4273842 |
|---|
| Gene Length | 1809 bp |
|---|
| Protein Length | 602 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | |
|---|
| Product | choline/carnitine/betaine transporter |
|---|
| Protein accession | YP_003649050 |
|---|
| Protein GI | 296141807 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACTG TTACTAACGA GACAGGAAAC CATCAGCGGA CCGACTGGGT CGTGTTCGGT
GTAGCGGCCG TCAGCGTTCT GGCGTTCGTC ATATGGGGTT TCCTTGATTC GGACGGGTTG
AAGCAGACGA CCTCCGATGT CCTTGACTGG ATCATTACCG ATTTGGGCTG GCTGTTCCTG
ATCTCAGCCA CGCTCTTCGT TCTTTTCGCG ATCTTCCTGG CCGTTTCCCG CTTCGGTCGC
ATCCCGCTCG GCCGGGACGG CGAGAAGCCC GAGTACAAGA CGGTCTCCTG GATCGCCATG
ATGTTCAGCG CCGGAATGGG CATCGGCCTG ATGTTCTTCG GCGCCGCGGA GCCGATCTAC
CACTTCGTCG GTGCGCCTCC GGGCACCTCC AGCCACGATG TGGCGGTGGC GATGGCCACC
ACGATGTTCC ACTGGGGCTT CCACCCGTGG GCCATCTACG CCGTTGTCGG CCTGGCGATC
GCCTACAGCA CCTTCCGGTG CGGCCGCAGC CAGCTGATCA GCTCGGTTTT CGCGCCCATC
TTCAACCGCA CCGGTGGTCA GGGCGCGGGT GGGCGGATCA TCGACATCCT GGCCATCTTC
GCCACCCTGT TCGGTACCAC CGCCTCGCTG GGCCTCGGCG CCGCGCAGGT GGGCGCCGGT
CTGGAGCGGC TGGGCTGGGT GGGTGACGGT TCGAGCAAGC TCCTGCTGGT GGCGATCATC
GCCCTCCTGA CGCTCGCCTT CGTGGCCTCC GCGGTCTCCG GTATCGCCAA GGGCATCCAG
TGGCTCTCCA ACACCAACAT GGTGCTGGCA CTGGTACTCG CGGTCTTCGT CTTCGTGGTG
GGGCCCACGG TGTTCATCCT CAACCTGCTG CCCACCACCA TGGGCGCCTA TGCGGCGGAC
TTCATGGACA TGTCGGCCCG GTCGGCGGCC AACGAACCCG AGGCCGGTGC CTGGCTCGCG
AAGTGGACCA TCTTCTATTG GGCCTGGTGG GTCAGTTGGA CCCCGTTCGT GGGCCTGTTC
CTGGCGAAGA TCTCGAAGGG CCGCACCATC CGCGAGTTCG TGATCGGCGT CATGGCAGTG
CCCACCCTGG TGTCGTTGGT GTGGTTCGTC ATCTTCGGCG GGACCGCGAT CAACCAGGAG
CAGAGCGGGC TCGGGGTGAG TTCGGCCGAG AACGAGGAGA AGATGCTCTT CGACGTGCTC
GGGAACCTGC CGTGGCCCAC GATCACGGCC TTCCTGGTGG TGTTGCTGGT GGGGATCTTC
TTCGTCTCCG GTGCTGATTC GGCATCGATC GTGATGGGAA CGCTGTCGCA GAAGGGCGAA
GAGGAACCGA ATCGCCTGAT CACCATCTTC TGGGGTGTGC TCACCGGCGG CGTGGCGGCG
CTGTTGCTCT GGGTGAGCGG TAACAACGCG CTGGAGGGCA TCAAACAGAT GGCCATCATC
GCCGCGGCAC CGTTCCTGGT GGTGATGCTC GGCATGTGCG TGGCGCTGAT GATGGACCTC
TGGCACGATC CGCTGATCGT CGCCGAGCGG CAGCGCCGTG ACGATCTCGG TCTTCGTGTC
CGGGTGCACG CGAACACCCT TGCCGTGACG GATGATTCCA CCGACGTGCT CCCCTCCGAG
GACGTCCCGG TGTACGTGGA CGGCGAGGTC CCGGAGGACC TCTACCATCC CGCGCACACC
GGCGAGATGG TCGCCGTCGA GGTCTTCGAG GCCGATGCCG AGAACAACGA GGCGTCGACC
GCGCGCAAGA CGGTCGAGGC GAGCGGCGAT GTCCGTGTGG TTATCACCAA GAACGACCAG
AAGCCGTAG
|
|---|
| Protein sequence | MATVTNETGN HQRTDWVVFG VAAVSVLAFV IWGFLDSDGL KQTTSDVLDW IITDLGWLFL
ISATLFVLFA IFLAVSRFGR IPLGRDGEKP EYKTVSWIAM MFSAGMGIGL MFFGAAEPIY
HFVGAPPGTS SHDVAVAMAT TMFHWGFHPW AIYAVVGLAI AYSTFRCGRS QLISSVFAPI
FNRTGGQGAG GRIIDILAIF ATLFGTTASL GLGAAQVGAG LERLGWVGDG SSKLLLVAII
ALLTLAFVAS AVSGIAKGIQ WLSNTNMVLA LVLAVFVFVV GPTVFILNLL PTTMGAYAAD
FMDMSARSAA NEPEAGAWLA KWTIFYWAWW VSWTPFVGLF LAKISKGRTI REFVIGVMAV
PTLVSLVWFV IFGGTAINQE QSGLGVSSAE NEEKMLFDVL GNLPWPTITA FLVVLLVGIF
FVSGADSASI VMGTLSQKGE EEPNRLITIF WGVLTGGVAA LLLWVSGNNA LEGIKQMAII
AAAPFLVVML GMCVALMMDL WHDPLIVAER QRRDDLGLRV RVHANTLAVT DDSTDVLPSE
DVPVYVDGEV PEDLYHPAHT GEMVAVEVFE ADAENNEAST ARKTVEASGD VRVVITKNDQ
KP
|
|---|
| |