| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_4044 |
|---|
| Symbol | |
|---|
| ID | 9158228 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | - |
|---|
| Start bp | 4174143 |
|---|
| End bp | 4178291 |
|---|
| Gene Length | 4149 bp |
|---|
| Protein Length | 1382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | |
|---|
| Product | queuine tRNA-ribosyltransferase |
|---|
| Protein accession | YP_003648954 |
|---|
| Protein GI | 296141711 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTGC TTCTCTACCG GTTGGGCAAG TTCGCCTACC TGAACCGTTT CAAGGTCATC
GCCGTCTGGG TGCTGCTGCT GATCGGCATG GGCGTCGGTG CCGCGACGCT CAGCAAGCCC
ACCGTCGACA ACTTCAACCT TCCCGGGCTG CCGTCCGAGA AGGCGACGGA CATCGTCAAC
GCGCAGTTCG GCGGACAGGG CTCCGATGAT CCGTTCACGA GCGCGTCGGC GACCATCGTC
TTCCACGCCA AGGACGGCAA GCTCACCGAT CCGAAGAACA CGGCGGGCAT CGACAAGACG
ATCGAGGAGA TCAAGGGCCT CACCAAGGAC GAGAACGGCA CGCAGGTCTC GATCGTCAAG
GACCCGAACC TCCTGCACAA CCCCACCGGC AAGCTCGACG ACGGTGTCCT CACTCCCGCG
CAGCGCGACA CCCTGGCCGC GATGCAGGCG CAGCAGAAGG ACATCGCCTC CACCAAATCG
CCCGAGCAGC AGAAGGCCGA TGCCGCCGTC ACCTCCACGG TGAGCCCGGA CGGGAAGACC
GCCAAGCTCA AGGTCGACTT CATCGGCAAG GTCACCGATC TGCCGAAGGA CACCGCGGAG
AAGATCAAGG ACGCCCGGAT CGCGGGCCAG GACGCCTCGC AGGGGTCGCT GCAGGTCGAG
GCCGACGGTT CCGCCGCCAA GGGCATGGAA GACATGGGCA TGACCAGCGA GCTGATCGGC
ATGCTGGTGG CCGCGATCGT CCTGATCATC ACGTTCGCTT CGCTGGTGGC ATGGGGCCTG
CCGCTGATGA ACGCGATCAT CGCGGTCCCC GTCGCCCTCG CGGGCGTCAT GATCGCCACC
CGATTCATCG AGCTCGGCAC GTTCCCCACG GTGCTCACCT CGATGATCGG CCTCGCCGTC
ACCATCGACT ACGCCCTGTT CATCGTGTCC CGATTCCGGC ACGAACTCCG GCGCCTGGGC
GCCACCACCA AGGAGCAGCG CGCCGAGGCG GCGGGTATCG CCGTGGGCAC CGCCGGCTCC
GCGGTGATCT TCGCGGGCCT CACCGTGATC ATCGCGCTGG CCGCGCTCGC CTTCATCGGG
ATGGACTTCC TCGGCCAGAT GGGTGTGGCG GCGGCGTGGG GCGTGCTCAT CGCCGTCATC
GTCGCGCTCA CCCTGCTGCC GGCCCTGCTG GGCCTGTTCG GCAGCAAGGT CTTCGCCGGC
CGGGTCAAGG GCCTGCACCC GCCGGACACC GACGAGGGCG AGGGCCGCAC CGCGAACGGC
CTGCGCTGGG CCAATGTGAT CAAGAAGGTC CCGGTCGTGA CGCTGCTCGC CGGTGTCGCG
GTGCTCGGCA TCCTCGCGAT TCCGATGAAG GACATGCAGA CCGCGCTACC GAGCTCGGGC
ATGAGCGAGA AGTCGACGTC CGAACGCAAG GCCTACGACC TCACCTCGGA TGCGTGGGGT
AAGGGTTCCA ACGGCCAGCT CATGGTGGCG GTCGACGGTT CGAAAGCCGA TCCGGGCCAG
CGGCTGCGCG CCTACGCGCA GATCGTCGAC CGGCTCAACA ACGATCCCGA GATGAAGACC
AAGGTCGCGA ACGCCCAGAT CGCGCAGCTC GCGCCGGACA ACAAGGCCGC GACGATCGTC
GTCACCCCCA AGGGCGGCCC GACCGATCAG CTGACCAAGG ACCTCGTCGA GGACCTGCGG
GCGCTGCCGA ACGGACCGAA CGGCCTCAAG CAGGCCTTCA ACATGGACCT CGGCGTGGCG
GGTAACACCG CCATCGAGAT GGACATCTCG GAGAAGCTGT CGAAGGAGGC GCTGCCGATC
TACGTCGCCA TCGTCGTCGG CCTCGCCTTC CTGCTGCTGC TGGTGGCCTT CCGGTCGATC
CTGGTGCCGC TGACGGCCGT GCTCGGCTTC CTGCTCTCGG TGGTGGCCAC CTTCGGCGTG
ACCTCGGCGA TCTTCACCGA CGGTGCGCTC GGCCTCATCG ACAACACGCA GCCACTGGTG
TCGTTCCTCC CGATCTTCAT GATCGGCATC GTCTTCGGCC TCGCGATGGA CTACCAGGTG
TTCCTGGTGT CCCGGATGCG TGAGGAGTAC ACGCACACGG GCGATGCGAC CAAGTCCGTC
GTCACCGGTG TGCAGTACGG CGCCCGTGTG GTTACCGCCG CCGCGATCAT CATGATCTCG
GTGTTCGCCT CGTTCATCCT CAACGACGCG GTGTTCATCA AGGAGATCGG CTTCGGCCTG
GCCGCCGCCG TGCTGTTCGA CGCCTTCGTG GTGCGCATGG TGATCATCCC CTCGATCATG
ATGCTGCTCG GCGATGCCGC GTGGTGGCTG CCCAAGTGGC TCGACCGGAT CCTGCCGAAC
GTCGATATCG AGGGTGAAGC GCTCGCCTCC GTGCTGGCCA AGACCTCGAC CGATACCGCG
CCGCTCCCGG ACGCACTGGC CGAGCACGAC ACCACCGAGG TTCCGGTGGC AGCCCGTGCG
GGCGCGTCCG ACACCGAGAA GGTGAAGGTG ACCGGCGGCG TGAACGGCTA CGTCAACGGT
GCCGTCCCGA CCGCGCCGGT GGGCCTGCCC ACGCAGCAGA TCCCGGCGCA GTCGACACCG
GCTGCCGCGG CGACCGCGCC GATTCCGGCC GCAGCATCGA CGGACGCCGA CGAGACCGAG
GCCGCCGCAG CGGTTTCCGT CCCGGATACC GGCGAGTACC CGCTCGCGCG CCCGGCCAAG
CCGACGGATG CCGAGACCAC GACGGGGCCC ATCCGCCGGG CCGAGCGGAC CCGCGCGGAT
CGCACTCGCG ACGAGCTGGC GCAGCTGCGT GAGCAGAACA AGGCGATCGC GGCGGAGCTC
ACCGCGCTGC GGTCCGACTA CCGCTCGATG ACCAGCCGTA CCCGGCTGCA GAACGAGCAC
ATCAGCGATC CGACCCGGTT CGACATCGAC GCGCGGCTCG AGGGGCCCGA CGGTCCGCTG
GGCCGTGCCG GCCGCCTGCT CACGCCGCAC GGTGAGATCC TGACACCGGC GTTCATCCCG
GTGGGCACCA AGGCGACCGT GAAGACGGTG ATGCCGGATG CAGTGGCCGA TCTGGGTGCG
CAGGCGGTAC TGGCGAACGC CTACCACCTG TACCTGCAGC CCGGCCCGGA GATCGTGGAG
CAGGCCGGTG GCCTCGGTAA GTTCATGAAC TGGGACGGCC CCACCTTCAC CGATTCCGGT
GGCTTCCAGG TGATGTCGTT GGGTTCGGGC TTCAAGAAGG TCATCGATAT GAACGGTGAT
CAGGAGCTGC AGGGCGACGA TGCCATCGCC GAGGGCAAGG ACCGGCTCTC CCGCGTCGAT
GACGACGGGG TCACCTTCCT GAGCCATCTC GATGGCACGG AGCACCGGTT CACGCCGGAG
CGGTCGATGC AGATCCAGCA CCAGCTGGGC GCCGACATCA TCTTCGCCTT CGATGAGCTG
ACCACCCTGC ACAACACCCG GGCGTACCAG GTGGAGTCGC TGGAGCGGAC TCGGCTGTGG
GCCCGGCGCT CGCTGTCCGA GCACAACTGG CTCACCGCGC AGCGCCACGA CGCGATCTCG
TTGTGGGGCG TGGTGCAGGG CGCGCAGTAC GAGGACCTGC GGCGCAAGGC CGCTCGTGAT
CTGCGGGCGC TGAGCGACGA GGACCGCGAG GGCGGCGGTC TCGGTTTCGG TGGTTACGGC
ATCGGCGGTG CCCTGGAGAA GGCGAACCTG GCGACCATCG TGCGCTGGGT GAACCAGGAG
CTGGAGGAGG ATAAGCCGAA GCACCTGCTG GGTATCTCCG AGCCGGACGA CATCTTCGCC
GCGGTGGAGC AGGGCATCGA CACCTTCGAT TGCGTGTCGC CGTCGCGGGT GGCCCGCAAC
GGCGCGATCT ACTCCGTGGA CGGCCGCTAC AACGTGACCA ACTCGCGGTT CAAGACCGAC
TTCCAGCCGC TCGACCCGGA GACGCAGAAC TACACCTCGC AGTTCTCCCG GGCCTACATC
CACCACCTGT TCAAGGCCAA GGAGGGGCTG GCGGCGACGT TGGCGACCAT CCACAACGAG
CAGTTCATCG TCTCGCTCGT GGCCAAGATC CGGCAGTCGA TGGTCGACGG CACCTACTGG
GAGTTCAAGG AGGAGTTCCT GGGCCGCTAC TACAAGGGCA CCCAGCAGCA CCTCGCGAAG
TCGGACTAG
|
|---|
| Protein sequence | MALLLYRLGK FAYLNRFKVI AVWVLLLIGM GVGAATLSKP TVDNFNLPGL PSEKATDIVN
AQFGGQGSDD PFTSASATIV FHAKDGKLTD PKNTAGIDKT IEEIKGLTKD ENGTQVSIVK
DPNLLHNPTG KLDDGVLTPA QRDTLAAMQA QQKDIASTKS PEQQKADAAV TSTVSPDGKT
AKLKVDFIGK VTDLPKDTAE KIKDARIAGQ DASQGSLQVE ADGSAAKGME DMGMTSELIG
MLVAAIVLII TFASLVAWGL PLMNAIIAVP VALAGVMIAT RFIELGTFPT VLTSMIGLAV
TIDYALFIVS RFRHELRRLG ATTKEQRAEA AGIAVGTAGS AVIFAGLTVI IALAALAFIG
MDFLGQMGVA AAWGVLIAVI VALTLLPALL GLFGSKVFAG RVKGLHPPDT DEGEGRTANG
LRWANVIKKV PVVTLLAGVA VLGILAIPMK DMQTALPSSG MSEKSTSERK AYDLTSDAWG
KGSNGQLMVA VDGSKADPGQ RLRAYAQIVD RLNNDPEMKT KVANAQIAQL APDNKAATIV
VTPKGGPTDQ LTKDLVEDLR ALPNGPNGLK QAFNMDLGVA GNTAIEMDIS EKLSKEALPI
YVAIVVGLAF LLLLVAFRSI LVPLTAVLGF LLSVVATFGV TSAIFTDGAL GLIDNTQPLV
SFLPIFMIGI VFGLAMDYQV FLVSRMREEY THTGDATKSV VTGVQYGARV VTAAAIIMIS
VFASFILNDA VFIKEIGFGL AAAVLFDAFV VRMVIIPSIM MLLGDAAWWL PKWLDRILPN
VDIEGEALAS VLAKTSTDTA PLPDALAEHD TTEVPVAARA GASDTEKVKV TGGVNGYVNG
AVPTAPVGLP TQQIPAQSTP AAAATAPIPA AASTDADETE AAAAVSVPDT GEYPLARPAK
PTDAETTTGP IRRAERTRAD RTRDELAQLR EQNKAIAAEL TALRSDYRSM TSRTRLQNEH
ISDPTRFDID ARLEGPDGPL GRAGRLLTPH GEILTPAFIP VGTKATVKTV MPDAVADLGA
QAVLANAYHL YLQPGPEIVE QAGGLGKFMN WDGPTFTDSG GFQVMSLGSG FKKVIDMNGD
QELQGDDAIA EGKDRLSRVD DDGVTFLSHL DGTEHRFTPE RSMQIQHQLG ADIIFAFDEL
TTLHNTRAYQ VESLERTRLW ARRSLSEHNW LTAQRHDAIS LWGVVQGAQY EDLRRKAARD
LRALSDEDRE GGGLGFGGYG IGGALEKANL ATIVRWVNQE LEEDKPKHLL GISEPDDIFA
AVEQGIDTFD CVSPSRVARN GAIYSVDGRY NVTNSRFKTD FQPLDPETQN YTSQFSRAYI
HHLFKAKEGL AATLATIHNE QFIVSLVAKI RQSMVDGTYW EFKEEFLGRY YKGTQQHLAK
SD
|
|---|
| |