Gene Tpau_3979 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpau_3979 
Symbol 
ID9158161 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTsukamurella paurometabola DSM 20162 
KingdomBacteria 
Replicon accessionNC_014158 
Strand+ 
Start bp4096993 
End bp4097661 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content66% 
IMG OID 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003648889 
Protein GI296141646 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.318215 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGCCAG AAAATGAGAC AGAGGGTCAA AGGACCTTCA TCGAAGAGGC CCGCCGCCGC 
CAGATCATCG CGGCGGCGGC CGAAGTGCTG GCCGATGAGG GGTACGGCCG TGCCACGCTC 
GCCCGCATTG CGCGGCAGGC CGGAATCTCC AAGGGCGTCA TCTCGTACCA CTTCGACGGC 
AAGGACGATC TGATGCGACA GGTGGTGATC CACCTCTTCG TCGCCGGTGC GGAGTTCATG 
GGCCCGCGCC TCGCCGAGCA GCACACGGCC ACCGACATCC TGCGTACCTA CATCGCCACC 
AACCTCGAAT ACATCAAGGC GGAGCGCCGA CTCCTGGGCG CCATGGTCGA AGTCGTCCTC 
AATTTGCGCA ACCCCGACGG CACCCCGGCA TTCAGCCCGA ACGACGGCGA GCAGCAGATG 
CTCGCGCCCC TTGCCGGAAT CCTGCGAGAA GGGCAAGAAT CCGGCGAGTT CTCCCCCGAT 
TTCGACCCGA TGATCCTGGC TCGGCTGATC CGCGATGCGA TCGACGGCGC CGCCGGCCGC 
GCCGCTCGTG ATCCGGACCT CGACCTCGAC GCCCATGCGG ACCAGATGAT CCGCGTCTAT 
CTCGCCGCGG TGCAGACTCC GCCGCACGCA TCCACACCCA CCGCACCGTC GGAGGACACC 
GATGACTGA
 
Protein sequence
MRPENETEGQ RTFIEEARRR QIIAAAAEVL ADEGYGRATL ARIARQAGIS KGVISYHFDG 
KDDLMRQVVI HLFVAGAEFM GPRLAEQHTA TDILRTYIAT NLEYIKAERR LLGAMVEVVL 
NLRNPDGTPA FSPNDGEQQM LAPLAGILRE GQESGEFSPD FDPMILARLI RDAIDGAAGR 
AARDPDLDLD AHADQMIRVY LAAVQTPPHA STPTAPSEDT DD