Gene Tpau_3943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpau_3943 
Symbol 
ID9158124 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTsukamurella paurometabola DSM 20162 
KingdomBacteria 
Replicon accessionNC_014158 
Strand- 
Start bp4063437 
End bp4064093 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content69% 
IMG OID 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003648854 
Protein GI296141611 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.938406 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCAGGAA GCCGTGAAAC CCGATCTGAA CTGCGGCGCA AACCCTCCCA AGGGCGAGCC 
AAGGACACCG TCGAGCGAGC GAAGTCGGCC GCGCGTCAGA TTCTGGCCGA GTCCGGGTAC 
GGGGCCTTGT CGATGGGGGC CATCGCCGAC CGCGCCGAGG TGTCCAAGGG CACCGTGTAC 
CAATACTTCC CGAACAAGGA ATCGGTGGTC GCGGCCCTGG TGGCCGAGAT CATGGACGAT 
CTCGTCGAAT CCTTCGGCGG ACGGCTGCGC GAGACCCTCG CGGTGGGATC GCTCTCACTG 
GGGCCGGAAT TGCTCACCTC CGTCTTCGCC GAGCTCGACC GGCACCGGCC CACTCTCACC 
GCAGTACTCG ACGGTGCGCC GCACCTGTTA CCGCCCAGCG CCTTCGACCC CATCTCCGAG 
CGCTGGGGAG ACGCCACCCG GACCTTGCTG GCGATCGGTG CCCGCGGGCC CGCGGAGCCC 
GGCCGGGCCC GCGTTGACGG CGACGCCCTG GTGACCATCC TCAGTGTGTG CGGTCCCGCA 
CTGTGTCTGC ACTACCTGTC GGCCGACTTG CGGGAGCAGC GAGAGGCGCT CGCCCGGACC 
TACTTCTCGA TGGCCTACGG GGGGCTCACC GCCGCCGGTC TGGGCCCCCT CGTGTAG
 
Protein sequence
MAGSRETRSE LRRKPSQGRA KDTVERAKSA ARQILAESGY GALSMGAIAD RAEVSKGTVY 
QYFPNKESVV AALVAEIMDD LVESFGGRLR ETLAVGSLSL GPELLTSVFA ELDRHRPTLT 
AVLDGAPHLL PPSAFDPISE RWGDATRTLL AIGARGPAEP GRARVDGDAL VTILSVCGPA 
LCLHYLSADL REQREALART YFSMAYGGLT AAGLGPLV