Gene Tpau_3587 details

Gene Information

• Locus tag: Tpau_3587
• ID: 9157766
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Tsukamurella paurometabola DSM 20162
• Kingdom: Bacteria
• Replicon accession: NC_014158
• Strand: +
• Start bp: 3696456
• End bp: 3697025
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 71%
• Product: RNA polymerase, sigma-24 subunit, ECF subfamily
• Protein accession: YP_003648504
• Protein GI: 296141261

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.866365
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCCGAG CTCGATCGGA TGCGGATGCG CTGCTGCCCA GGGTGGCCGG CGGCGACGTC 
GGCGCCTTCC GCGATCTCTA CGACCGGACT GCACACCTGG TGTACGGAAC CGCCGTGCGG 
GTGATCGGAG ACCGTGGTTA CGGCGAGGAG ATCACCCAGG AGGTCTACCT GGAGGCGTGG 
CACAAGGCAT CGGACTTCGA TCCGGCGCGC GGCTCCGCCC AGTCCTGGCT GGTGACCATC 
GCGCACCGTC GGGCAGTGGA CCGGGTGCGG GCCGAACGCG CCCGCGGCGA CCGGGAGAAC 
ACCTTCGCCA CCGACGCCTA CCAGCGCCCG CACGACACGG TCTCGGAGGC GGCGGAACGC 
AACGAGGATG CGACCGCGGT GGTCGATTGC CTCGACACCC TCAGCTCCTC ACAGCGCGAT 
GCGCTGACGC TGGCGTACTA CGGCGGGCAC ACCTACCGGG AGGTGGCGGA GCAGCTGGAT 
ACCCCGCTGC CCACGATCAA GACGCGGATC CGCGACGGCA TCGCACGGCT GCGCCGATGC 
CTCGGCCCGC TGGCGGGTGA TCCGGCGTGA 

 

Protein sequence

MARARSDADA LLPRVAGGDV GAFRDLYDRT AHLVYGTAVR VIGDRGYGEE ITQEVYLEAW 
HKASDFDPAR GSAQSWLVTI AHRRAVDRVR AERARGDREN TFATDAYQRP HDTVSEAAER 
NEDATAVVDC LDTLSSSQRD ALTLAYYGGH TYREVAEQLD TPLPTIKTRI RDGIARLRRC 
LGPLAGDPA