| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_3566 |
|---|
| Symbol | |
|---|
| ID | 9157745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | - |
|---|
| Start bp | 3673297 |
|---|
| End bp | 3674862 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | |
|---|
| Product | Sigma 54 interacting domain protein |
|---|
| Protein accession | YP_003648484 |
|---|
| Protein GI | 296141241 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.182361 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGTGAGC TGCTGATCTG CCTGCGCGCC TTCCGGATCC GGCCGCTCGC CGTGGCCGGT
GCCGTCGGTG CGGGTGTGCT CACCGCGGGC AGTGCGCTGG CCCTGGCGGG CCTCTCCGCG
TGGCTGATCA CCAAGGCATG GACCATGCCC CCGGTGCTCA CCCTGTCGCT GGCGGTCACG
GCGGTCCGAG CGCTGGGTAT CACCCGTGGT CTCATGCGCT ACGTGGAGCG CCTCGCGACC
CACCGCATGG CACTGTCCGG GCTCACCGAG CTGCGCGTGG CGCTGTACTC CCGGTTGGCC
GCGGCGGCCC CCGCGGAAAC CGTTCGCCGC ACCGACGGCG AACTCCTGGC CCGCACCGGA
TCCGATGTCG ATGCCGTCGG AGACGCCCTG GTGCGCACGA TCATTCCCGC CGCCGTTGCC
GCGACCGTGT CCCTGGCCGC GGTCGGCTGG ATGTGGTTCG TCGACCCCGC CGCCGGCGCC
GTGCTCGCGG GCTGCCTCGT GCTGGCGGGC CTGCTCGCCC CCTGGCTCGT GGTGCGTGCA
ACGCGGGCCC GCGCCGCCGC CGAGTCCGCC GGCAGCGAGG CCTTCGGCGC CGCGGCTTCC
GCGGTGCTCG ACCACGCGGG CGAGCTCGCC GTGGTCGGCC GCCTCGACGA GATCCGGGCC
CGCGCCGAGC GTGCCGAGAC AGCCCGACGG TCCGCCGTCG ACCGCGCCGC CCGGATCGGC
GCCCTCGCCG ATGCCGCGCT GCCGCTCGCC ATCGGGATCG CCGCGGTCGC CGCGCTGCTG
CTGGCCTCCG GCCGCGCCGG TCACGCGGAT GCGACCACGC TGGGCATCCT GGTGCTGTTG
CCGCTCAGTG CCTTCGAGGC ACTCACGCCG CTGCCCGACG CCGCGCGACA GTATGTACGC
TCCGCGGACG CCGCATCACG TCTCGCGCCA CTGCTGACGC TGCCGCCGGT GCCCGGCGGG
ACGCTCCCAG CGCCCTCGCA CCCCGCGCTC CGGCTGGGTG GTCTCACGGT GGCGCCGGGC
GAGCGGCTCG TGGTCCGCGG TGATTCGGGC GCGGGGAAGA CCACACTGCT GCTAGCGCTG
GCCGGCCTGG ACGATCGCGG CGGTGAGGTG CTCGTCGACG GCCGGCCCGC TGCCGACTTC
GCGGATCTAC CTGCTGCCGT GGCCTTCTTC GGCGAAGACG CACACGTCTT CGCCACCTCG
ATCCTGGAGA ACTGCCGGGT GGCCCGCGGC GATGCGACCG AGGAACAGGC GCGGCGCGCG
CTGGGTGCTG TCGGGCTGGG CGAGTGGATC GACGCGCTGC CCGACGGAGT GCGCACCCCG
CTGGAGCACG GTACGGAGTC ACTCTCCGGC GGCCAGCGCC GCCGACTGTT GCTGGCACGT
GCCGTGGTCA GTAGTGCGCC CGTCGTGGTG CTCGACGAAC CGACCGAACA CCTCGATCGC
GCCGACGCCG CCCGGCTGCT CGCCGAGATC CTCGAACCCG CCGGGCTCTT CCCCGGCCGC
ACCGTGGTCG TCGCGGGACA CGCCGAACCG CCGGCTGGGG TGCCGGTCCA CGAGGTCAGG
CGGTGA
|
|---|
| Protein sequence | MRELLICLRA FRIRPLAVAG AVGAGVLTAG SALALAGLSA WLITKAWTMP PVLTLSLAVT
AVRALGITRG LMRYVERLAT HRMALSGLTE LRVALYSRLA AAAPAETVRR TDGELLARTG
SDVDAVGDAL VRTIIPAAVA ATVSLAAVGW MWFVDPAAGA VLAGCLVLAG LLAPWLVVRA
TRARAAAESA GSEAFGAAAS AVLDHAGELA VVGRLDEIRA RAERAETARR SAVDRAARIG
ALADAALPLA IGIAAVAALL LASGRAGHAD ATTLGILVLL PLSAFEALTP LPDAARQYVR
SADAASRLAP LLTLPPVPGG TLPAPSHPAL RLGGLTVAPG ERLVVRGDSG AGKTTLLLAL
AGLDDRGGEV LVDGRPAADF ADLPAAVAFF GEDAHVFATS ILENCRVARG DATEEQARRA
LGAVGLGEWI DALPDGVRTP LEHGTESLSG GQRRRLLLAR AVVSSAPVVV LDEPTEHLDR
ADAARLLAEI LEPAGLFPGR TVVVAGHAEP PAGVPVHEVR R
|
|---|
| |