| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_3405 |
|---|
| Symbol | |
|---|
| ID | 9157580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | - |
|---|
| Start bp | 3494068 |
|---|
| End bp | 3495780 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | permease for cytosine/purines uracil thiamine allantoin |
|---|
| Protein accession | YP_003648328 |
|---|
| Protein GI | 296141085 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.286515 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATC AGCTGACACC GAAGGACACC GCCACGGCGA TGCCTTCGGC GGAGCAAAGC
GCGCTGCGGG AGACGCTCGA GGACTACACC CTGCGATTCG CCCCGCGCAG CTACCGCAAG
TGGGGACCCG CGGTGGTCGC GACCTCGGCT CTCGGCGGCA TCGCGTATCT CGCCGACTTC
GCCATCGGCG CCAACATCGG CATCGCGGGC GGCACCGGCA ACGCGCTCAT CGGCATCGGC
TTCTTCGCCC TGGTCATCGT GCTCACCGGC TACCCGCTCT CCTACTACGC GGCCCGGTAC
AACATCGACC TCGACCTGAT CACCCGCGGT AGCGGCTTCG GCTACTACGG CTCGGTGCTC
ACCAACGTGA TCTTCGCGAG CTTCACGTTC ATCTTCTTCG CACTCGAGGG CTCGATCATG
GCGCAGGGCC TCAAGCTGGG CCTCGGCATG CCGCTGTGGC TGGGCTATCT GGTGAGCTCG
GTGATCGTGA TCCCGCTGGT GATCTACGGC ATGAAGAGCC TGGCGAAGCT GCAGGTGTGG
ACCACTCCGC TGTGGCTGGT GATGATGGTG CTGCCCTTCG GTTACCTGCT CTTCCAGCAC
CCCGACGCCA TAGAATCGTT CTTCGCCTAC AGCGGCACCG ACATCGTGCG CGACGCCTCG
GGCACCGTGA TCTCCGCGAC CCCTGCCGGC CACGGCGTCT CTTTCGCCGG CGCCATGCTC
GCCGCCGGTG TGTGCCTGTC GCTCATCGCG CAGATCGCCG AGCAGATCGA CTACCTGCGG
TTCATGCCGC CCAAGACCGC CGAGAACAGC CGCAAGTGGT GGATCGCCGT GATCACCGCC
GGCCCCGGCT GGGTGTTCTT CGGCGCCATC AAGCAGATCG TGGGCCTCTT CCTCGCGGTC
TACCTGATCG CCCAGACCGC CGAGAACGCC GGTATCGCCA ACGAGCCCGT GCACCAGTTC
CTGGAGATCT ACAAGGACTT CATGCCCGGC TGGCTCGCCA TGACCCTGGC CGTGATCCTC
GTGGTGATCA GCCAGATCAA GATCAACGTG ACCAACGCCT ACTCCGGCTC GCTGGCGTGG
ACCAACAGCT TCACCCGCGT CACCAAGACC TACCCGGGCC GGCTCGTGTT CGTCATCTTC
AACGTGGCGA TCGCGCTGGG CCTGATGCTC GCCGACATGT TCAGCTTCCT CAACAGCCTG
CTGGCCTTCT ACGCCAACTG CGGTATCGCA TGGATCGTGG TGGTCGCGAG CGATATCGCG
ATCAACAAGT ACCTGCTGAA GATCTCGCCG AAGGTGCCCG AGTTCCGTCG CGGCATGCTC
TACAACGTCA ACCCCGTGGG TTTCGTCTCG GTGATCGTTG CCGCGGGCCT GTCGATCATG
GTGTTCTTCG GCCTGCTCGG GTCCACGCTG CAGCCCTACT CGCCGCTGGT CGCGCTGGTG
CTGGCGCTGG TGCTGCCGCC GGTCCTGGCG CTGGCCACGC AGGGCAAGTA CTACCTGCGG
CGCACCGACG ACGGCATCGA TCTGCCGATG TTCGACGCCG ACGGCAACCC GTCGGACGCG
AAGCTGCTGT GCTGTGTGAC CGGTATCGAA TTCGAGCGGC CCGACATGAT CGCCTCGAAC
GTGCCCGGCC CGAACGGGGA GAAGCAGTAC ATCAGCTCGC TCGCGCTCTC CTGCGACAAG
TCCGGCGAGC ACGTGCTTCC CGCGCAGAAG TAG
|
|---|
| Protein sequence | MTDQLTPKDT ATAMPSAEQS ALRETLEDYT LRFAPRSYRK WGPAVVATSA LGGIAYLADF
AIGANIGIAG GTGNALIGIG FFALVIVLTG YPLSYYAARY NIDLDLITRG SGFGYYGSVL
TNVIFASFTF IFFALEGSIM AQGLKLGLGM PLWLGYLVSS VIVIPLVIYG MKSLAKLQVW
TTPLWLVMMV LPFGYLLFQH PDAIESFFAY SGTDIVRDAS GTVISATPAG HGVSFAGAML
AAGVCLSLIA QIAEQIDYLR FMPPKTAENS RKWWIAVITA GPGWVFFGAI KQIVGLFLAV
YLIAQTAENA GIANEPVHQF LEIYKDFMPG WLAMTLAVIL VVISQIKINV TNAYSGSLAW
TNSFTRVTKT YPGRLVFVIF NVAIALGLML ADMFSFLNSL LAFYANCGIA WIVVVASDIA
INKYLLKISP KVPEFRRGML YNVNPVGFVS VIVAAGLSIM VFFGLLGSTL QPYSPLVALV
LALVLPPVLA LATQGKYYLR RTDDGIDLPM FDADGNPSDA KLLCCVTGIE FERPDMIASN
VPGPNGEKQY ISSLALSCDK SGEHVLPAQK
|
|---|
| |