Gene Tpau_3078 details

Gene Information

• Locus tag: Tpau_3078
• ID: 9157249
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Tsukamurella paurometabola DSM 20162
• Kingdom: Bacteria
• Replicon accession: NC_014158
• Strand: +
• Start bp: 3193231
• End bp: 3193800
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 70%
• Product: RNA polymerase, sigma-24 subunit, ECF subfamily
• Protein accession: YP_003648009
• Protein GI: 296140766

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCATCG ACGAGACCGG CGACCGCGCC CTGCTCGCGC GTGCCGGTAC GGGTGACGCC 
GACGCGTTCG CCGCGATCTA CGACCGGCAC ATCAGACCCG TGTACTGGCA GGCCTACGCG 
GTCCTGCGTG ACGCCGACGC CGCGCAGGAG GTGGGCCAGG ACACCTTCCT CACGCTGTGG 
CGGCGGATCG AGGAGGTACG CGTGGTCGAC GAATCGGTAC TTCCGTGGCT CCTTGCCACC 
GCCCGGTACA CGGCGCTCAA CGCGGGCCGG CGGCTGTCCG TCGTGCGGGA CCGGTCAGCG 
CCGCTCGACG GAGATGGTTC CGTCGCAGAC CCGGCTCCGT CACCCGAGGA TGCGCTGCTG 
GCGAGCGAGG TCAGGCATCG GATCGACAGC GCCGTCGCGG CACTCTCGCC CATCGACCAA 
CGCCTCTATC ACCTCTGCGT GGAGGGCGAA CGAACCTACG ACAGCGCTGC GAACGAGTTG 
GGCGTGACGC ACGCCGCCGT CCGTAATCGC GTCTCCCGGC TACGCACCCG CCTGCGCGCC 
GACCTGAGCA CCCTGAGGGA GCAGTCATGA 

 

Protein sequence

MSIDETGDRA LLARAGTGDA DAFAAIYDRH IRPVYWQAYA VLRDADAAQE VGQDTFLTLW 
RRIEEVRVVD ESVLPWLLAT ARYTALNAGR RLSVVRDRSA PLDGDGSVAD PAPSPEDALL 
ASEVRHRIDS AVAALSPIDQ RLYHLCVEGE RTYDSAANEL GVTHAAVRNR VSRLRTRLRA 
DLSTLREQS